Wall clock time and date at job start Tue Mar 31 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46896 * 2 1 4 4 C 1.53001 * 109.47376 * 119.99801 * 2 1 3 5 5 H 1.09001 * 109.47098 * 295.92361 * 4 2 1 6 6 C 1.50694 * 109.46949 * 175.92028 * 4 2 1 7 7 O 1.21287 * 120.00139 * 275.07532 * 6 4 2 8 8 N 1.34777 * 119.99988 * 95.08215 * 6 4 2 9 9 C 1.46931 * 120.62978 * 356.42510 * 8 6 4 10 10 C 1.53622 * 108.54451 * 126.37238 * 9 8 6 11 11 C 1.53036 * 109.24338 * 54.85312 * 10 9 8 12 12 C 1.50708 * 109.44640 * 178.49907 * 11 10 9 13 13 H 1.08001 * 119.99542 * 120.06189 * 12 11 10 14 14 C 1.37871 * 120.00184 * 300.06036 * 12 11 10 15 15 N 1.31515 * 119.99845 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00316 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46713 * 60.00124 * 16 14 12 18 18 H 1.48500 * 109.47199 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47177 * 300.00507 * 16 14 12 20 20 C 1.53046 * 109.54110 * 298.51078 * 11 10 9 21 21 C 1.46932 * 120.63215 * 176.70208 * 8 6 4 22 22 N 1.46899 * 109.46806 * 55.92167 * 4 2 1 23 23 C 1.46901 * 111.00309 * 54.49527 * 22 4 2 24 24 C 1.46902 * 110.99804 * 178.44838 * 22 4 2 25 25 H 1.09001 * 109.47442 * 299.99382 * 1 2 3 26 26 H 1.08999 * 109.47597 * 59.99986 * 1 2 3 27 27 H 1.09010 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46960 * 240.00037 * 2 1 3 29 29 H 1.09001 * 109.46962 * 304.28061 * 3 2 1 30 30 H 1.08994 * 109.46803 * 64.28186 * 3 2 1 31 31 H 1.08999 * 109.46978 * 184.28436 * 3 2 1 32 32 H 1.09002 * 109.58374 * 246.20017 * 9 8 6 33 33 H 1.08993 * 109.58339 * 6.62258 * 9 8 6 34 34 H 1.09003 * 109.63213 * 294.86203 * 10 9 8 35 35 H 1.08992 * 109.42979 * 174.72843 * 10 9 8 36 36 H 1.08997 * 109.45965 * 58.53658 * 11 10 9 37 37 H 0.96999 * 120.00058 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.49726 * 301.42026 * 20 11 10 39 39 H 1.08991 * 109.52433 * 181.33489 * 20 11 10 40 40 H 1.08997 * 109.58773 * 353.37512 * 21 8 6 41 41 H 1.08995 * 109.58265 * 113.65568 * 21 8 6 42 42 H 1.09001 * 109.47074 * 67.63278 * 23 22 4 43 43 H 1.08998 * 109.47436 * 187.63527 * 23 22 4 44 44 H 1.09002 * 109.47159 * 307.63428 * 23 22 4 45 45 H 1.08995 * 109.47197 * 56.04491 * 24 22 4 46 46 H 1.09000 * 109.47082 * 176.04836 * 24 22 4 47 47 H 1.09003 * 109.47222 * 296.04567 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7376 -0.1669 2.1377 6 6 3.5436 -0.8093 1.1997 7 8 4.0784 -1.7164 0.5979 8 7 4.2940 0.1199 1.8241 9 6 3.6631 1.2671 2.4909 10 6 4.1651 1.3258 3.9416 11 6 5.6951 1.3608 3.9449 12 6 6.1918 1.4556 5.3646 13 1 6.8303 0.6825 5.7660 14 6 5.8310 2.5290 6.1510 15 7 5.0530 3.4701 5.6623 16 14 6.4461 2.6462 7.9109 17 1 7.9307 2.6813 7.9150 18 1 5.9204 3.8856 8.5375 19 1 5.9768 1.4651 8.6789 20 6 6.2377 0.0837 3.2991 21 6 5.7589 0.0081 1.8459 22 7 1.4716 -2.0748 1.2995 23 6 1.7491 -2.8088 0.0577 24 6 1.9692 -2.8116 2.4689 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6153 1.9780 -0.8492 30 1 1.7406 1.9337 0.9258 31 1 3.1272 1.4436 -0.0768 32 1 3.9332 2.1861 1.9705 33 1 2.5801 1.1446 2.4821 34 1 3.8202 0.4457 4.4844 35 1 3.7796 2.2246 4.4227 36 1 6.0397 2.2276 3.3810 37 1 4.7989 4.2251 6.2156 38 1 5.8732 -0.7847 3.8479 39 1 7.3273 0.0981 3.3229 40 1 6.0591 -0.9454 1.4115 41 1 6.1962 0.8249 1.2719 42 1 2.8185 -3.0058 -0.0167 43 1 1.2052 -3.7534 0.0646 44 1 1.4293 -2.2119 -0.7965 45 1 1.7507 -2.2460 3.3747 46 1 1.4797 -3.7841 2.5209 47 1 3.0464 -2.9515 2.3789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541985369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:42 Heat of formation + Delta-G solvation = -34.659440 kcal Electronic energy + Delta-G solvation = -24536.099614 eV Core-core repulsion = 21332.762553 eV Total energy + Delta-G solvation = -3203.337061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59516 -37.69990 -36.34551 -34.47043 -33.40886 -31.34374 -30.14864 -27.92120 -27.46609 -26.89784 -25.97359 -23.27226 -22.52274 -22.15368 -20.68775 -19.30989 -18.18498 -17.38252 -16.28325 -15.90063 -15.50862 -15.24549 -14.63703 -14.48358 -14.10827 -13.81174 -13.17576 -13.03136 -12.91048 -12.77558 -12.63474 -12.58863 -12.29581 -12.11060 -11.87216 -11.73464 -11.55428 -11.43215 -11.25386 -11.00819 -10.91654 -10.86994 -10.69746 -10.43213 -10.34444 -10.15948 -9.87111 -9.60082 -9.21591 -8.96628 -8.41513 -8.08290 -7.92327 -6.06352 -4.12660 2.89278 3.27508 3.32439 3.35434 3.45077 4.00306 4.38125 4.71892 4.81059 4.93809 5.15121 5.23274 5.37192 5.40872 5.55352 5.58244 5.66279 5.68969 5.71717 5.75854 5.88660 5.91797 5.94046 6.00349 6.03043 6.05360 6.09258 6.10787 6.21853 6.24315 6.37044 6.38983 6.43910 6.62112 6.84131 6.95434 7.00534 7.05638 7.11396 7.23883 7.62602 7.87539 7.90048 8.00027 8.36407 8.52436 8.90332 9.52642 10.99091 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023921 B = 0.004737 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.228280 B = 5909.468968 C = 6140.922047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.157 4.157 4 C 0.065 3.935 5 H 0.106 0.894 6 C 0.489 3.511 7 O -0.560 6.560 8 N -0.594 5.594 9 C 0.098 3.902 10 C -0.125 4.125 11 C 0.050 3.950 12 C -0.513 4.513 13 H 0.054 0.946 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.122 4.122 21 C 0.110 3.890 22 N -0.515 5.515 23 C -0.002 4.002 24 C 0.015 3.985 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.038 0.962 35 H 0.105 0.895 36 H 0.027 0.973 37 H 0.261 0.739 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.372 -5.625 -9.856 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 C -0.215 4.215 4 C -0.047 4.047 5 H 0.124 0.876 6 C 0.276 3.724 7 O -0.440 6.440 8 N -0.326 5.326 9 C -0.024 4.024 10 C -0.163 4.163 11 C 0.031 3.969 12 C -0.551 4.551 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.160 4.160 21 C -0.013 4.013 22 N -0.237 5.237 23 C -0.150 4.150 24 C -0.133 4.133 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.123 0.877 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.689 -5.882 -10.051 14.530 hybrid contribution 1.268 0.120 1.101 1.684 sum -7.421 -5.762 -8.949 12.976 Atomic orbital electron populations 1.21724 0.93713 1.02664 1.01229 1.21105 0.97041 0.95768 0.96251 1.22086 1.01514 0.95362 1.02489 1.22109 0.89038 0.92329 1.01203 0.87641 1.21763 0.90573 0.81659 0.78420 1.90535 1.74392 1.34727 1.44384 1.48434 1.07300 1.24383 1.52473 1.22363 0.96565 0.87253 0.96182 1.22117 0.99918 1.03018 0.91246 1.18620 0.91254 0.91547 0.95458 1.21159 1.30033 1.06789 0.97147 0.92810 1.24944 0.95044 0.95592 0.98274 1.69818 1.35759 1.10918 1.36569 0.86679 0.79210 0.77331 0.84919 1.20317 1.21268 1.20336 1.21995 0.99863 1.01088 0.93073 1.21685 0.79274 1.01514 0.98795 1.62549 1.55848 1.01467 1.03877 1.22798 1.02827 0.97736 0.91593 1.22463 0.98995 0.98729 0.93128 0.92574 0.93163 0.91398 0.90665 0.92237 0.91674 0.92322 0.91691 0.91018 0.94319 0.87740 0.95488 0.92889 0.93115 0.92227 0.90625 0.92308 0.91148 0.92455 0.91601 0.91428 0.91308 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.85 37.16 0.33 -1.08 16 2 C -0.08 -1.00 1.90 -90.62 -0.17 -1.17 16 3 C -0.16 -1.84 7.65 37.16 0.28 -1.56 16 4 C 0.07 0.92 1.49 -68.87 -0.10 0.82 16 5 H 0.11 1.51 5.84 -51.93 -0.30 1.20 16 6 C 0.49 8.29 4.87 -10.99 -0.05 8.23 16 7 O -0.56 -10.75 12.33 5.55 0.07 -10.68 16 8 N -0.59 -10.39 2.68 -172.50 -0.46 -10.85 16 9 C 0.10 1.70 4.35 -3.48 -0.02 1.68 16 10 C -0.12 -2.67 5.17 -26.39 -0.14 -2.81 16 11 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 12 C -0.51 -13.50 8.56 -34.44 -0.29 -13.80 16 13 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.06 11.30 55.43 0.63 -23.43 16 16 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.12 -2.48 5.30 -26.61 -0.14 -2.62 16 21 C 0.11 2.00 6.42 -3.71 -0.02 1.97 16 22 N -0.52 -7.05 4.20 -244.59 -1.03 -8.07 16 23 C 0.00 -0.03 8.43 60.06 0.51 0.48 16 24 C 0.02 0.21 9.17 60.07 0.55 0.76 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.73 6.97 -51.92 -0.36 0.37 16 28 H 0.08 0.97 6.41 -51.93 -0.33 0.64 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.75 6.60 -51.93 -0.34 0.41 16 31 H 0.06 0.78 6.61 -51.93 -0.34 0.44 16 32 H 0.06 1.11 7.98 -51.93 -0.41 0.70 16 33 H 0.07 1.08 3.94 -51.93 -0.20 0.88 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.11 5.41 -51.93 -0.28 0.83 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.81 5.54 -51.93 -0.29 0.52 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.04 0.59 6.65 -51.93 -0.35 0.24 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -27.68 341.52 -8.31 -35.99 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.09 Total: 2.84 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 0.45 Total: -6.56 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -0.86 Total: -42.36 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.68 -8.31 -35.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541985369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.330 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds