Wall clock time and date at job start Tue Mar 31 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47237 * 2 1 4 4 C 1.52995 * 109.47150 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47261 * 55.00605 * 4 3 2 6 6 C 1.53008 * 109.46979 * 175.00005 * 4 3 2 7 7 C 1.52994 * 109.47041 * 185.00218 * 6 4 3 8 8 N 1.46496 * 109.47433 * 294.99966 * 4 3 2 9 9 C 1.34783 * 119.99638 * 154.72233 * 8 4 3 10 10 O 1.21586 * 119.99945 * 354.97943 * 9 8 4 11 11 N 1.34777 * 119.99590 * 174.98170 * 9 8 4 12 12 C 1.46925 * 120.62680 * 184.95849 * 11 9 8 13 13 C 1.52760 * 109.00799 * 233.57880 * 12 11 9 14 14 C 1.53038 * 109.38443 * 305.59235 * 13 12 11 15 15 C 1.50698 * 109.44994 * 181.25017 * 14 13 12 16 16 H 1.08005 * 120.00576 * 239.93581 * 15 14 13 17 17 C 1.37885 * 119.99819 * 59.93840 * 15 14 13 18 18 N 1.31506 * 120.00012 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99827 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47366 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47538 * 120.00031 * 19 17 15 22 22 H 1.48503 * 109.47101 * 239.99739 * 19 17 15 23 23 C 1.53043 * 109.54213 * 61.23679 * 14 13 12 24 24 C 1.46921 * 120.63229 * 5.23171 * 11 9 8 25 25 H 1.09002 * 109.47496 * 299.99910 * 1 2 3 26 26 H 1.08998 * 109.47551 * 60.00024 * 1 2 3 27 27 H 1.09001 * 109.47306 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47081 * 240.00300 * 2 1 3 29 29 H 1.09002 * 109.46675 * 120.00117 * 2 1 3 30 30 H 1.09002 * 109.46804 * 59.99666 * 3 2 1 31 31 H 1.08999 * 109.47354 * 300.00448 * 3 2 1 32 32 H 1.09000 * 109.47260 * 305.00184 * 6 4 3 33 33 H 1.09005 * 109.46865 * 65.00626 * 6 4 3 34 34 H 1.09005 * 109.47466 * 300.00268 * 7 6 4 35 35 H 1.09009 * 109.47380 * 60.00242 * 7 6 4 36 36 H 1.09000 * 109.47149 * 179.97438 * 7 6 4 37 37 H 0.96998 * 120.00333 * 335.00594 * 8 4 3 38 38 H 1.08995 * 109.58851 * 353.41480 * 12 11 9 39 39 H 1.09004 * 109.58727 * 113.84419 * 12 11 9 40 40 H 1.09002 * 109.56797 * 185.55355 * 13 12 11 41 41 H 1.09008 * 109.38423 * 65.51897 * 13 12 11 42 42 H 1.08997 * 109.45904 * 301.21277 * 14 13 12 43 43 H 0.96999 * 120.00170 * 180.02562 * 18 17 15 44 44 H 1.08991 * 109.49683 * 178.68518 * 23 14 13 45 45 H 1.08996 * 109.52089 * 58.60216 * 23 14 13 46 46 H 1.08997 * 109.59418 * 246.15851 * 24 11 9 47 47 H 1.08997 * 109.58917 * 6.44434 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 1 3.9336 0.8530 -0.8410 6 6 4.0800 2.8795 -0.1251 7 6 5.6048 2.8703 -0.2499 8 7 4.0578 0.8589 1.2527 9 6 5.2775 0.2874 1.2995 10 8 5.9353 0.1742 0.2832 11 7 5.7681 -0.1586 2.4729 12 6 7.1372 -0.6846 2.5604 13 6 7.0961 -2.0772 3.1868 14 6 6.3615 -2.0096 4.5276 15 6 6.3469 -3.3768 5.1614 16 1 5.4064 -3.8607 5.3801 17 6 7.5343 -4.0099 5.4621 18 7 8.6794 -3.4209 5.1954 19 14 7.5162 -5.7049 6.2470 20 1 6.1115 -6.1449 6.4426 21 1 8.2183 -6.6681 5.3613 22 1 8.2045 -5.6490 7.5617 23 6 4.9235 -1.5377 4.3003 24 6 4.9419 -0.1337 3.6876 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.6457 3.3430 -1.0109 33 1 3.7913 3.4462 0.7602 34 1 6.0392 2.4068 0.6359 35 1 5.8936 2.3036 -1.1352 36 1 5.9681 3.8940 -0.3399 37 1 3.5014 0.8802 2.0469 38 1 7.5690 -0.7473 1.5616 39 1 7.7430 -0.0252 3.1819 40 1 8.1130 -2.4357 3.3468 41 1 6.5709 -2.7594 2.5182 42 1 6.8735 -1.3091 5.1873 43 1 9.5147 -3.8665 5.4066 44 1 4.3941 -1.5122 5.2526 45 1 4.4179 -2.2243 3.6213 46 1 5.3650 0.5715 4.4029 47 1 3.9264 0.1693 3.4327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542845179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:46 Heat of formation + Delta-G solvation = -56.696816 kcal Electronic energy + Delta-G solvation = -23584.614492 eV Core-core repulsion = 20380.321819 eV Total energy + Delta-G solvation = -3204.292674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14711 -37.64916 -36.23773 -33.71182 -33.56986 -32.13657 -30.88410 -29.97088 -28.50483 -26.06838 -24.20850 -23.05798 -22.30939 -21.20789 -20.93451 -20.10482 -18.84854 -17.52661 -16.51608 -16.19683 -15.43276 -14.97793 -14.59355 -14.31870 -14.26511 -13.88159 -13.54885 -13.27140 -13.07306 -12.74413 -12.54294 -12.47721 -12.42755 -12.23169 -11.88390 -11.72322 -11.40119 -11.20126 -11.05222 -10.93979 -10.81330 -10.74478 -10.63303 -10.60932 -10.39548 -10.03552 -9.63807 -9.53743 -9.15193 -8.88244 -8.77532 -8.35274 -7.83695 -6.00419 -4.07050 3.09588 3.28578 3.37141 3.40329 3.64667 4.26359 4.42419 4.51612 4.83845 4.85185 5.17016 5.21308 5.29288 5.29721 5.36959 5.38784 5.58189 5.61520 5.66414 5.77828 5.79103 5.87695 5.95071 5.96814 6.04046 6.06343 6.10451 6.18731 6.24496 6.32887 6.45749 6.52559 6.56568 6.64669 6.81690 6.86542 7.01439 7.20154 7.28646 7.54950 7.73581 7.95565 8.08770 8.39768 8.42334 8.96456 9.05051 9.58006 11.04946 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022241 B = 0.004088 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.628631 B = 6847.166631 C = 7681.869653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.126 4.126 4 C 0.161 3.839 5 H 0.087 0.913 6 C -0.133 4.133 7 C -0.143 4.143 8 N -0.746 5.746 9 C 0.706 3.294 10 O -0.597 6.597 11 N -0.620 5.620 12 C 0.127 3.873 13 C -0.123 4.123 14 C 0.050 3.950 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.123 4.123 24 C 0.114 3.886 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.392 0.608 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.103 0.897 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 11.542 -8.081 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.164 4.164 4 C 0.055 3.945 5 H 0.106 0.894 6 C -0.172 4.172 7 C -0.200 4.200 8 N -0.404 5.404 9 C 0.408 3.592 10 O -0.476 6.476 11 N -0.356 5.356 12 C 0.005 3.995 13 C -0.162 4.162 14 C 0.031 3.969 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.162 4.162 24 C -0.009 4.009 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.228 0.772 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.885 11.438 -8.801 18.695 hybrid contribution -0.256 -0.961 0.943 1.370 sum -12.140 10.477 -7.858 17.858 Atomic orbital electron populations 1.21773 0.95958 1.01637 1.01513 1.21524 0.95507 0.96521 1.02753 1.21911 0.94247 0.97516 1.02694 1.20859 0.92557 0.93661 0.87425 0.89447 1.21965 0.97280 0.96490 1.01428 1.21744 0.94953 1.00090 1.03251 1.45372 1.17774 1.63731 1.13525 1.15829 0.81379 0.78127 0.83863 1.90861 1.60020 1.63792 1.32949 1.47453 1.15902 1.65244 1.07019 1.21646 0.79808 0.96795 1.01214 1.21936 1.04897 0.92245 0.97122 1.18621 0.88991 0.96285 0.92999 1.21228 0.92314 1.02058 1.39506 0.92745 1.24960 0.95647 0.97684 0.95662 1.69852 0.97192 1.37913 1.47902 0.86575 0.78018 0.84587 0.79035 1.19884 1.21055 1.21075 1.22004 1.01562 0.93505 0.99086 1.21679 0.92986 0.99560 0.86701 0.92841 0.92939 0.92780 0.91892 0.91651 0.91612 0.90626 0.91648 0.92251 0.92248 0.92267 0.94044 0.77158 0.90578 0.92764 0.87918 0.94443 0.95526 0.93023 0.92270 0.92962 0.92101 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.18 5.82 -26.73 -0.16 -1.34 16 3 C -0.13 -1.08 4.75 -26.74 -0.13 -1.21 16 4 C 0.16 1.84 2.26 -67.93 -0.15 1.69 16 5 H 0.09 1.20 7.50 -51.93 -0.39 0.81 16 6 C -0.13 -1.42 5.61 -26.73 -0.15 -1.57 16 7 C -0.14 -1.90 8.59 37.15 0.32 -1.58 16 8 N -0.75 -9.91 4.39 -58.68 -0.26 -10.17 16 9 C 0.71 12.41 6.68 -86.91 -0.58 11.83 16 10 O -0.60 -12.28 13.34 5.29 0.07 -12.21 16 11 N -0.62 -11.23 2.98 -178.77 -0.53 -11.76 16 12 C 0.13 2.59 6.41 -3.93 -0.03 2.57 16 13 C -0.12 -2.89 5.14 -26.83 -0.14 -3.02 16 14 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 15 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.85 11.30 55.43 0.63 -24.23 16 19 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 C -0.12 -2.38 5.30 -26.61 -0.14 -2.52 16 24 C 0.11 1.83 6.39 -3.71 -0.02 1.81 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.95 5.77 -51.93 -0.30 0.65 16 35 H 0.06 0.86 7.93 -51.92 -0.41 0.45 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.39 4.51 6.09 -40.82 -0.25 4.26 16 38 H 0.08 1.59 6.99 -51.93 -0.36 1.23 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 41 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.06 0.74 5.64 -51.93 -0.29 0.45 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -29.35 357.55 -9.72 -39.07 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.60 Total: 3.54 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -1.39 Total: -5.62 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.16 Total: -46.16 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.35 -9.72 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542845179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.630 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds