Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47182 * 2 1 4 4 C 1.53001 * 109.46657 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47680 * 304.99830 * 4 3 2 6 6 C 1.53001 * 109.46709 * 185.00184 * 4 3 2 7 7 C 1.52997 * 109.47215 * 174.99841 * 6 4 3 8 8 N 1.46493 * 109.47400 * 65.00638 * 4 3 2 9 9 C 1.34785 * 119.99850 * 204.99863 * 8 4 3 10 10 O 1.21584 * 119.99947 * 355.69251 * 9 8 4 11 11 N 1.34782 * 119.99609 * 175.69261 * 9 8 4 12 12 C 1.46922 * 120.62548 * 184.95970 * 11 9 8 13 13 C 1.52763 * 109.00790 * 233.58489 * 12 11 9 14 14 C 1.53039 * 109.38442 * 305.58907 * 13 12 11 15 15 C 1.50694 * 109.45001 * 181.25169 * 14 13 12 16 16 H 1.08005 * 120.00276 * 239.94019 * 15 14 13 17 17 C 1.37877 * 119.99937 * 59.94118 * 15 14 13 18 18 N 1.31523 * 119.99832 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00287 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47258 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47650 * 119.99895 * 19 17 15 22 22 H 1.48499 * 109.47494 * 240.00212 * 19 17 15 23 23 C 1.53041 * 109.53363 * 61.24044 * 14 13 12 24 24 C 1.46919 * 120.63055 * 5.24443 * 11 9 8 25 25 H 1.09001 * 109.47437 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46981 * 299.99830 * 1 2 3 27 27 H 1.09005 * 109.47001 * 59.99746 * 1 2 3 28 28 H 1.08998 * 109.47212 * 120.00553 * 2 1 3 29 29 H 1.09001 * 109.47228 * 239.99756 * 2 1 3 30 30 H 1.08999 * 109.47180 * 299.99666 * 3 2 1 31 31 H 1.08996 * 109.47023 * 60.00196 * 3 2 1 32 32 H 1.09001 * 109.47148 * 295.00006 * 6 4 3 33 33 H 1.08997 * 109.47164 * 55.00008 * 6 4 3 34 34 H 1.09006 * 109.46783 * 60.00243 * 7 6 4 35 35 H 1.09007 * 109.47549 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47646 * 299.99845 * 7 6 4 37 37 H 0.97000 * 120.00520 * 24.99352 * 8 4 3 38 38 H 1.09001 * 109.58840 * 353.42139 * 12 11 9 39 39 H 1.09005 * 109.58400 * 113.84446 * 12 11 9 40 40 H 1.09001 * 109.56248 * 185.55149 * 13 12 11 41 41 H 1.08999 * 109.38371 * 65.51985 * 13 12 11 42 42 H 1.08995 * 109.46107 * 301.21967 * 14 13 12 43 43 H 0.96998 * 119.99397 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.49482 * 178.68111 * 23 14 13 45 45 H 1.09001 * 109.52729 * 58.60213 * 23 14 13 46 46 H 1.09001 * 109.58405 * 246.15033 * 24 11 9 47 47 H 1.09000 * 109.59167 * 6.43853 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 0.0006 5 1 3.9331 0.8531 0.8427 6 6 4.0800 2.8794 0.1264 7 6 5.6048 2.8702 0.2525 8 7 4.0589 0.8586 -1.2509 9 6 5.2809 0.2919 -1.2980 10 8 6.0086 0.3343 -0.3249 11 7 5.6962 -0.3217 -2.4239 12 6 6.9790 -1.0371 -2.4569 13 6 7.8128 -0.5099 -3.6233 14 6 7.0009 -0.6147 -4.9163 15 6 7.8331 -0.1237 -6.0727 16 1 7.4949 0.7145 -6.6640 17 6 9.0264 -0.7444 -6.3759 18 7 9.4384 -1.7647 -5.6555 19 14 10.0584 -0.1353 -7.8088 20 1 9.3791 1.0171 -8.4535 21 1 11.3921 0.2898 -7.3129 22 1 10.2243 -1.2290 -8.7996 23 6 5.7374 0.2408 -4.7980 24 6 4.8775 -0.2826 -3.6432 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.7921 3.4459 -0.7591 33 1 3.6450 3.3431 1.0117 34 1 6.0397 2.4065 -0.6329 35 1 5.9682 3.8941 0.3417 36 1 5.8928 2.3038 1.1381 37 1 3.5032 0.8797 -2.0456 38 1 7.5144 -0.8705 -1.5222 39 1 6.7993 -2.1036 -2.5924 40 1 8.7240 -1.1007 -3.7170 41 1 8.0725 0.5327 -3.4403 42 1 6.7209 -1.6543 -5.0861 43 1 10.2781 -2.2011 -5.8686 44 1 5.1714 0.1842 -5.7278 45 1 6.0157 1.2766 -4.6038 46 1 4.5229 -1.2863 -3.8776 47 1 4.0253 0.3796 -3.4902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542845180.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = -55.154370 kcal Electronic energy + Delta-G solvation = -23584.129559 eV Core-core repulsion = 20379.903771 eV Total energy + Delta-G solvation = -3204.225788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.15628 -37.65275 -36.24177 -33.70035 -33.59544 -32.11776 -30.85600 -29.96712 -28.49405 -26.07029 -24.18886 -23.06415 -22.29493 -21.22273 -20.93458 -20.09225 -18.85074 -17.53968 -16.48912 -16.20944 -15.37742 -15.02508 -14.61824 -14.44497 -14.25214 -13.82006 -13.49581 -13.17510 -13.11412 -12.75231 -12.64832 -12.46860 -12.38996 -12.14822 -11.87512 -11.74216 -11.37138 -11.19273 -11.06601 -10.94862 -10.84360 -10.65066 -10.62841 -10.57999 -10.39833 -10.03583 -9.61469 -9.53734 -9.15436 -8.87092 -8.75101 -8.35205 -7.83198 -6.00463 -4.07070 3.09569 3.28549 3.37103 3.40318 3.64628 4.26360 4.42386 4.50525 4.80578 4.83014 5.18014 5.23641 5.29341 5.29724 5.37950 5.38711 5.57469 5.61058 5.67763 5.78251 5.78858 5.85631 5.92879 5.98904 6.04416 6.11034 6.15062 6.15316 6.29248 6.36554 6.45742 6.53694 6.64634 6.71772 6.82073 6.86867 7.01670 7.20166 7.28635 7.54948 7.73587 7.95573 8.08794 8.39816 8.42339 8.96445 9.04939 9.57972 11.04864 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.003830 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.986392 B = 7309.887555 C = 7658.670072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.126 4.126 4 C 0.163 3.837 5 H 0.085 0.915 6 C -0.133 4.133 7 C -0.143 4.143 8 N -0.745 5.745 9 C 0.704 3.296 10 O -0.594 6.594 11 N -0.619 5.619 12 C 0.127 3.873 13 C -0.123 4.123 14 C 0.050 3.950 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.123 4.123 24 C 0.114 3.886 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.057 0.943 37 H 0.392 0.608 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.103 0.897 41 H 0.037 0.963 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.597 4.836 9.910 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.164 4.164 4 C 0.057 3.943 5 H 0.103 0.897 6 C -0.172 4.172 7 C -0.200 4.200 8 N -0.404 5.404 9 C 0.406 3.594 10 O -0.474 6.474 11 N -0.356 5.356 12 C 0.005 3.995 13 C -0.162 4.162 14 C 0.031 3.969 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.162 4.162 24 C -0.009 4.009 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.228 0.772 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.121 0.879 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.911 4.710 10.637 18.912 hybrid contribution 0.338 0.369 -1.305 1.398 sum -14.573 5.078 9.332 18.035 Atomic orbital electron populations 1.21778 0.95959 1.01573 1.01606 1.21522 0.95506 0.96605 1.02591 1.21921 0.94303 0.97436 1.02783 1.20852 0.92399 0.93870 0.87139 0.89709 1.21971 0.97573 0.96333 1.01309 1.21804 0.94642 0.99827 1.03727 1.45381 1.17637 1.63913 1.13449 1.15844 0.81676 0.78323 0.83535 1.90868 1.55120 1.65502 1.35876 1.47451 1.22820 1.55770 1.09563 1.21647 0.82449 0.94355 1.01009 1.21935 1.00845 1.00089 0.93327 1.18617 0.90154 0.94910 0.93190 1.21226 1.04986 1.15591 1.13273 0.92749 1.24966 0.97636 0.94910 0.96486 1.69861 1.21954 1.21877 1.39167 0.86572 0.80321 0.78717 0.82582 1.19884 1.21057 1.21083 1.22006 0.98538 1.00375 0.95250 1.21679 0.92969 1.00411 0.85864 0.92837 0.92893 0.92808 0.91959 0.91724 0.91543 0.90599 0.92293 0.91841 0.91569 0.94394 0.92396 0.77164 0.90570 0.92770 0.87922 0.94445 0.95533 0.93030 0.92278 0.92967 0.92108 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.08 5.82 -26.73 -0.16 -1.23 16 3 C -0.13 -1.06 4.75 -26.73 -0.13 -1.19 16 4 C 0.16 1.87 2.25 -67.93 -0.15 1.71 16 5 H 0.08 1.13 7.64 -51.93 -0.40 0.74 16 6 C -0.13 -1.52 5.61 -26.73 -0.15 -1.67 16 7 C -0.14 -2.06 8.47 37.16 0.31 -1.75 16 8 N -0.75 -9.86 4.39 -58.68 -0.26 -10.12 16 9 C 0.70 12.31 7.02 -86.91 -0.61 11.70 16 10 O -0.59 -12.09 12.57 5.29 0.07 -12.02 16 11 N -0.62 -11.17 2.98 -178.76 -0.53 -11.71 16 12 C 0.13 2.59 6.41 -3.93 -0.03 2.56 16 13 C -0.12 -2.88 5.14 -26.83 -0.14 -3.01 16 14 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 15 C -0.51 -13.69 8.56 -34.44 -0.29 -13.98 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 17 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 18 N -0.89 -24.84 11.30 55.43 0.63 -24.22 16 19 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.12 -2.38 5.30 -26.61 -0.14 -2.52 16 24 C 0.11 1.82 6.39 -3.71 -0.02 1.80 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.62 7.75 -51.93 -0.40 0.22 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.17 5.55 -51.93 -0.29 0.88 16 35 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.06 0.89 7.80 -51.93 -0.40 0.49 16 37 H 0.39 4.48 6.09 -40.82 -0.25 4.23 16 38 H 0.08 1.59 6.99 -51.93 -0.36 1.23 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.10 2.67 6.03 -51.93 -0.31 2.36 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.06 0.74 5.65 -51.93 -0.29 0.45 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -29.19 356.79 -9.75 -38.95 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.59 Total: 3.49 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.42 Total: -5.77 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.16 Total: -46.04 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.07 Total: -12.02 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.19 -9.75 -38.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542845180.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.208 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds