Wall clock time and date at job start Tue Mar 31 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47039 * 2 1 4 4 C 1.52999 * 109.46943 * 119.99832 * 2 1 3 5 5 H 1.08996 * 109.46860 * 179.97438 * 4 2 1 6 6 C 1.50697 * 109.47214 * 299.92649 * 4 2 1 7 7 O 1.21289 * 120.00071 * 85.19794 * 6 4 2 8 8 N 1.34777 * 120.00202 * 265.19305 * 6 4 2 9 9 C 1.46920 * 120.62856 * 4.25936 * 8 6 4 10 10 C 1.53628 * 108.54228 * 126.36507 * 9 8 6 11 11 C 1.53038 * 109.24196 * 54.85646 * 10 9 8 12 12 C 1.50695 * 109.44848 * 178.49431 * 11 10 9 13 13 H 1.08009 * 119.99871 * 120.06203 * 12 11 10 14 14 C 1.37881 * 120.00416 * 300.05947 * 12 11 10 15 15 N 1.31518 * 119.99605 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00274 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46773 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46936 * 120.00000 * 16 14 12 19 19 H 1.48501 * 109.46933 * 240.00221 * 16 14 12 20 20 C 1.53038 * 109.53964 * 298.51259 * 11 10 9 21 21 C 1.46923 * 120.62924 * 184.53408 * 8 6 4 22 22 N 1.46897 * 109.47165 * 59.92925 * 4 2 1 23 23 C 1.46899 * 111.00308 * 56.17324 * 22 4 2 24 24 C 1.46896 * 111.00290 * 180.12659 * 22 4 2 25 25 H 1.08995 * 109.46857 * 185.83385 * 1 2 3 26 26 H 1.08991 * 109.47015 * 305.83507 * 1 2 3 27 27 H 1.09006 * 109.46783 * 65.83863 * 1 2 3 28 28 H 1.08998 * 109.47089 * 240.00241 * 2 1 3 29 29 H 1.08998 * 109.47370 * 183.80265 * 3 2 1 30 30 H 1.08998 * 109.47290 * 303.80187 * 3 2 1 31 31 H 1.09009 * 109.47317 * 63.80072 * 3 2 1 32 32 H 1.08997 * 109.58881 * 246.19998 * 9 8 6 33 33 H 1.09004 * 109.58810 * 6.62522 * 9 8 6 34 34 H 1.08996 * 109.63650 * 294.86437 * 10 9 8 35 35 H 1.09006 * 109.42664 * 174.72393 * 10 9 8 36 36 H 1.09002 * 109.45801 * 58.53186 * 11 10 9 37 37 H 0.96995 * 119.99793 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.49319 * 301.41340 * 20 11 10 39 39 H 1.08998 * 109.50221 * 181.31886 * 20 11 10 40 40 H 1.08997 * 109.59126 * 353.37463 * 21 8 6 41 41 H 1.09009 * 109.58613 * 113.66260 * 21 8 6 42 42 H 1.09001 * 109.47065 * 56.34249 * 23 22 4 43 43 H 1.08994 * 109.47750 * 176.34413 * 23 22 4 44 44 H 1.09000 * 109.46871 * 296.34641 * 23 22 4 45 45 H 1.09007 * 109.46990 * 56.04446 * 24 22 4 46 46 H 1.09001 * 109.47318 * 176.04552 * 24 22 4 47 47 H 1.09003 * 109.47257 * 296.04799 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1300 -0.7216 1.2490 6 6 1.5392 -0.0097 2.4797 7 8 0.4409 -0.2682 2.9248 8 7 2.3116 0.9137 3.0855 9 6 3.6040 1.3049 2.5066 10 6 3.6280 2.8333 2.3532 11 6 3.3240 3.4808 3.7062 12 6 3.3828 4.9804 3.5693 13 1 2.5104 5.5775 3.7907 14 6 4.5502 5.5903 3.1615 15 7 5.6123 4.8632 2.8915 16 14 4.6228 7.4491 2.9912 17 1 3.3048 8.0309 3.3511 18 1 5.6664 7.9889 3.8994 19 1 4.9551 7.8049 1.5883 20 6 1.9259 3.0655 4.1698 21 6 1.8800 1.5438 4.3406 22 7 1.5490 -2.1057 1.2502 23 6 1.9424 -2.8047 0.0195 24 6 2.0174 -2.8297 2.4394 25 1 -0.3633 -1.0223 0.1045 26 1 -0.3633 0.6016 0.8331 27 1 -0.3633 0.4207 -0.9377 28 1 1.8934 -0.5138 -0.8900 29 1 3.1279 1.4433 -0.0682 30 1 1.6221 1.9756 -0.8539 31 1 1.7334 1.9363 0.9221 32 1 4.4112 0.9885 3.1672 33 1 3.7237 0.8364 1.5297 34 1 2.8765 3.1403 1.6260 35 1 4.6145 3.1481 2.0127 36 1 4.0616 3.1539 4.4391 37 1 6.4335 5.2922 2.6043 38 1 1.1904 3.3703 3.4253 39 1 1.7008 3.5455 5.1221 40 1 0.8618 1.2330 4.5743 41 1 2.5480 1.2445 5.1484 42 1 3.0259 -2.7631 -0.0915 43 1 1.6225 -3.8452 0.0744 44 1 1.4707 -2.3243 -0.8378 45 1 1.7126 -2.2906 3.3364 46 1 1.5827 -3.8292 2.4509 47 1 3.1044 -2.9064 2.4133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542905701.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:46 Heat of formation + Delta-G solvation = -31.933781 kcal Electronic energy + Delta-G solvation = -24658.851241 eV Core-core repulsion = 21455.632373 eV Total energy + Delta-G solvation = -3203.218868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45862 -37.65876 -36.39760 -34.40035 -33.44405 -31.28686 -30.14361 -27.99083 -27.46137 -26.75112 -25.95838 -23.26035 -22.58755 -22.02568 -20.95780 -19.09030 -17.91298 -17.17892 -16.33647 -16.20829 -15.40570 -15.01833 -14.56771 -14.26556 -14.13807 -13.94705 -13.35387 -13.12513 -12.94113 -12.65474 -12.50195 -12.46269 -12.29539 -12.24626 -11.93832 -11.67171 -11.58335 -11.53229 -11.30071 -10.98568 -10.74829 -10.68599 -10.61541 -10.50407 -10.37412 -10.07144 -9.62800 -9.17853 -9.15955 -8.92638 -8.38832 -8.26542 -7.94972 -6.05071 -4.10920 3.00641 3.25701 3.34444 3.36694 3.38784 3.99715 4.39501 4.70117 4.96893 5.00694 5.10127 5.24864 5.28283 5.33693 5.44072 5.49236 5.57065 5.60370 5.69148 5.79814 5.83787 5.90053 5.93965 5.96363 6.07400 6.13728 6.15738 6.21845 6.24567 6.31039 6.45132 6.54201 6.64811 6.68221 6.84689 6.93622 6.97479 7.06333 7.17252 7.28522 7.65546 7.91183 7.96730 8.03260 8.38915 8.66244 8.92893 9.54412 11.00369 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026529 B = 0.004806 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.183313 B = 5824.683049 C = 6085.842927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.165 4.165 4 C 0.069 3.931 5 H 0.060 0.940 6 C 0.522 3.478 7 O -0.537 6.537 8 N -0.602 5.602 9 C 0.095 3.905 10 C -0.125 4.125 11 C 0.048 3.952 12 C -0.510 4.510 13 H 0.055 0.945 14 C 0.062 3.938 15 N -0.892 5.892 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.122 4.122 21 C 0.112 3.888 22 N -0.522 5.522 23 C 0.023 3.977 24 C 0.023 3.977 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.102 0.898 36 H 0.026 0.974 37 H 0.259 0.741 38 H 0.052 0.948 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.025 0.975 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.739 -12.616 -5.440 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 C -0.222 4.222 4 C -0.042 4.042 5 H 0.077 0.923 6 C 0.309 3.691 7 O -0.414 6.414 8 N -0.335 5.335 9 C -0.027 4.027 10 C -0.164 4.164 11 C 0.030 3.970 12 C -0.548 4.548 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.161 4.161 21 C -0.010 4.010 22 N -0.247 5.247 23 C -0.125 4.125 24 C -0.125 4.125 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.651 -12.714 -5.224 14.511 hybrid contribution 1.266 1.048 -0.151 1.651 sum -3.385 -11.665 -5.375 13.283 Atomic orbital electron populations 1.21753 0.93771 1.03087 1.01022 1.21118 0.97655 0.96171 0.95204 1.22311 1.01272 0.95081 1.03545 1.21826 0.97792 0.89466 0.95124 0.92260 1.20145 0.85029 0.79685 0.84275 1.90634 1.20131 1.65072 1.65557 1.48279 1.20718 1.39695 1.24836 1.22328 0.83451 0.99555 0.97371 1.22199 1.04391 0.89075 1.00692 1.18632 0.90408 0.95093 0.92867 1.21248 0.97201 0.91617 1.44765 0.92669 1.24949 0.95688 0.97954 0.95310 1.69846 1.01916 1.34779 1.46577 0.86582 0.78042 0.86007 0.77658 1.19823 1.21080 1.21064 1.21994 1.01089 0.92122 1.00846 1.21668 1.00077 0.94599 0.84647 1.61707 1.59810 1.00493 1.02642 1.22458 0.98347 0.99019 0.92706 1.22425 0.97320 0.99122 0.93642 0.91323 0.92196 0.93611 0.90617 0.91980 0.92284 0.90647 0.92366 0.91018 0.93391 0.87944 0.95603 0.93073 0.92966 0.92269 0.90400 0.92422 0.95657 0.91287 0.90817 0.90940 0.91204 0.95898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.51 37.16 0.32 -1.63 16 2 C -0.08 -1.10 2.25 -90.62 -0.20 -1.30 16 3 C -0.16 -2.36 6.96 37.15 0.26 -2.10 16 4 C 0.07 1.00 1.29 -68.87 -0.09 0.91 16 5 H 0.06 0.83 6.12 -51.93 -0.32 0.51 16 6 C 0.52 9.06 3.95 -10.99 -0.04 9.02 16 7 O -0.54 -10.74 14.32 5.55 0.08 -10.66 16 8 N -0.60 -10.66 2.54 -172.50 -0.44 -11.10 16 9 C 0.09 1.67 5.10 -3.49 -0.02 1.65 16 10 C -0.13 -2.66 4.74 -26.39 -0.13 -2.78 16 11 C 0.05 1.13 2.06 -91.74 -0.19 0.94 16 12 C -0.51 -13.39 8.56 -34.44 -0.29 -13.69 16 13 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 14 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 15 N -0.89 -24.08 11.30 55.43 0.63 -23.45 16 16 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.12 -2.48 5.30 -26.61 -0.14 -2.63 16 21 C 0.11 2.05 6.44 -3.71 -0.02 2.02 16 22 N -0.52 -6.95 3.77 -244.59 -0.92 -7.87 16 23 C 0.02 0.23 9.01 60.06 0.54 0.77 16 24 C 0.02 0.29 9.30 60.06 0.56 0.85 16 25 H 0.07 0.98 7.43 -51.93 -0.39 0.59 16 26 H 0.06 1.00 6.84 -51.93 -0.36 0.64 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.86 6.43 -51.93 -0.33 0.53 16 29 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.29 4.47 -51.92 -0.23 1.05 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.11 3.44 -51.93 -0.18 0.93 16 34 H 0.05 1.03 5.85 -51.93 -0.30 0.72 16 35 H 0.10 2.45 6.03 -51.93 -0.31 2.13 16 36 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 41 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 42 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 44 H 0.07 0.71 6.45 -51.93 -0.33 0.37 16 45 H 0.07 1.07 6.53 -51.92 -0.34 0.73 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 340.29 15.07 5.13 5.13 Total: -1.00 -28.26 340.29 -8.08 -36.34 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.99 Total: 2.42 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 0.45 Total: -6.43 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -0.73 Total: -42.42 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.26 -8.08 -36.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542905701.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.408 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds