Wall clock time and date at job start Tue Mar 31 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 C 1.53006 * 109.46646 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47050 * 55.00158 * 4 3 2 6 6 C 1.52997 * 109.47164 * 295.00155 * 4 3 2 7 7 C 1.52996 * 109.46975 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47346 * 59.99594 * 7 6 4 9 9 C 1.52997 * 109.47415 * 300.00136 * 8 7 6 10 10 C 1.52999 * 109.46626 * 174.99857 * 4 3 2 11 11 H 1.09000 * 109.47160 * 60.00369 * 10 4 3 12 12 N 1.46497 * 109.47704 * 300.00272 * 10 4 3 13 13 C 1.34771 * 120.00268 * 155.00269 * 12 10 4 14 14 O 1.21587 * 120.00310 * 0.02562 * 13 12 10 15 15 N 1.34781 * 120.00124 * 180.02562 * 13 12 10 16 16 C 1.46492 * 120.00203 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47218 * 179.97438 * 16 15 13 18 18 C 1.50707 * 109.47188 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99566 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99890 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00370 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99830 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47158 * 90.00028 * 22 20 18 24 24 H 1.48496 * 109.47469 * 210.00260 * 22 20 18 25 25 H 1.48501 * 109.47139 * 330.00517 * 22 20 18 26 26 H 1.08998 * 109.47136 * 300.00104 * 1 2 3 27 27 H 1.09006 * 109.47001 * 59.99561 * 1 2 3 28 28 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46482 * 240.00121 * 2 1 3 30 30 H 1.08990 * 109.46745 * 120.00317 * 2 1 3 31 31 H 1.08995 * 109.47505 * 60.00421 * 3 2 1 32 32 H 1.09000 * 109.47175 * 299.99937 * 3 2 1 33 33 H 1.09000 * 109.47140 * 299.99948 * 6 4 3 34 34 H 1.09001 * 109.47375 * 59.99966 * 6 4 3 35 35 H 1.09004 * 109.47368 * 299.99783 * 7 6 4 36 36 H 1.08996 * 109.47261 * 180.02562 * 7 6 4 37 37 H 1.09002 * 109.47070 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.46986 * 60.00254 * 8 7 6 39 39 H 1.09000 * 109.47140 * 300.00024 * 9 8 7 40 40 H 1.09001 * 109.46922 * 179.97438 * 9 8 7 41 41 H 0.97003 * 119.99331 * 334.99762 * 12 10 4 42 42 H 0.97003 * 119.99475 * 359.97438 * 15 13 12 43 43 H 1.09002 * 109.47390 * 300.00151 * 16 15 13 44 44 H 1.09005 * 109.47527 * 59.99714 * 16 15 13 45 45 H 1.08992 * 109.47156 * 299.99947 * 17 16 15 46 46 H 1.08999 * 109.46671 * 60.00277 * 17 16 15 47 47 H 0.96997 * 120.00375 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 6 4.0795 0.8329 1.3083 7 6 5.6095 0.8334 1.3091 8 6 6.1191 2.2706 1.1836 9 6 5.6097 2.8801 -0.1240 10 6 4.0801 2.8794 -0.1251 11 1 3.7165 3.4689 0.7165 12 7 3.5923 3.4630 -1.3771 13 6 3.4637 4.7996 -1.4925 14 8 3.7530 5.5212 -0.5576 15 7 3.0144 5.3365 -2.6442 16 6 2.8752 6.7894 -2.7698 17 6 2.3512 7.1327 -4.1658 18 6 2.2074 8.6273 -4.2948 19 1 2.4644 9.2682 -3.4643 20 6 1.7487 9.1765 -5.4733 21 7 1.4362 8.3962 -6.4847 22 14 1.5697 11.0291 -5.6329 23 1 2.8376 11.6064 -6.1469 24 1 0.4659 11.3404 -6.5762 25 1 1.2634 11.6133 -4.3024 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7159 1.4225 2.1498 34 1 3.7161 -0.1908 1.3978 35 1 5.9735 0.2441 0.4675 36 1 5.9724 0.3988 2.2405 37 1 7.2091 2.2708 1.1838 38 1 5.7552 2.8599 2.0252 39 1 5.9737 2.2907 -0.9656 40 1 5.9725 3.9041 -0.2131 41 1 3.3620 2.8873 -2.1231 42 1 2.7840 4.7608 -3.3902 43 1 2.1744 7.1535 -2.0186 44 1 3.8461 7.2618 -2.6202 45 1 3.0523 6.7687 -4.9167 46 1 1.3804 6.6604 -4.3157 47 1 1.1131 8.7826 -7.3136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543181827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:34 Heat of formation + Delta-G solvation = -82.933689 kcal Electronic energy + Delta-G solvation = -22555.017741 eV Core-core repulsion = 19349.587352 eV Total energy + Delta-G solvation = -3205.430390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16467 -38.54012 -35.12841 -34.80997 -33.93134 -32.76916 -31.00292 -30.11660 -28.72512 -26.15021 -24.64498 -23.11614 -22.05236 -20.91784 -20.75319 -20.38660 -20.06308 -17.84196 -16.46977 -16.17958 -15.47843 -15.13703 -14.96460 -14.52090 -14.40661 -14.23347 -14.01211 -13.63582 -13.39607 -13.26997 -13.04301 -12.84657 -12.54247 -12.25007 -12.02453 -11.60594 -11.36460 -11.30522 -11.15801 -11.12785 -11.01348 -10.87630 -10.65859 -10.61030 -10.48942 -10.26910 -10.14434 -9.83986 -9.50943 -9.22809 -8.87831 -8.45531 -8.18938 -6.07138 -4.09590 3.11764 3.31158 3.37224 3.42078 3.66982 4.34751 4.41115 4.49692 4.60372 4.75127 4.79476 4.93564 5.00473 5.05555 5.11145 5.27666 5.29990 5.32415 5.36673 5.43477 5.52465 5.54960 5.67015 5.68853 5.82876 5.86698 5.91615 5.94372 5.96659 6.05450 6.10327 6.17646 6.21649 6.31225 6.38042 6.43937 6.76016 6.82550 7.06564 7.32617 7.60616 7.66531 7.92420 8.29257 8.51374 8.95816 9.08329 9.55058 11.04573 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.003043 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.157623 B = 9198.260326 C =10123.405169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.093 4.093 5 H 0.073 0.927 6 C -0.111 4.111 7 C -0.121 4.121 8 C -0.117 4.117 9 C -0.131 4.131 10 C 0.172 3.828 11 H 0.085 0.915 12 N -0.748 5.748 13 C 0.699 3.301 14 O -0.599 6.599 15 N -0.740 5.740 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.392 0.608 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.022 0.978 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.304 -20.584 13.213 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.112 4.112 5 H 0.092 0.908 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.155 4.155 9 C -0.170 4.170 10 C 0.066 3.934 11 H 0.103 0.897 12 N -0.403 5.403 13 C 0.398 3.602 14 O -0.478 6.478 15 N -0.394 5.394 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.225 0.775 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.483 -19.851 13.892 24.640 hybrid contribution -0.334 0.477 -1.018 1.172 sum 4.150 -19.374 12.874 23.629 Atomic orbital electron populations 1.21784 0.95996 1.01352 1.02010 1.21575 0.95772 0.96976 1.01826 1.21665 0.94318 0.96618 1.02782 1.21445 0.95578 0.95376 0.98793 0.90820 1.21589 0.95429 1.00888 0.97010 1.21571 0.95624 0.97000 1.01630 1.21496 1.00233 0.95836 0.97916 1.21953 0.95743 1.01729 0.97553 1.20724 0.93003 0.92798 0.86881 0.89659 1.45217 1.72587 1.05599 1.16934 1.16081 0.78514 0.81838 0.83722 1.90877 1.57614 1.59995 1.39269 1.45538 1.69965 1.09883 1.13967 1.21561 1.00294 0.75735 1.00620 1.19320 0.96539 0.97192 0.89389 1.21063 1.44184 0.91485 0.99142 0.92234 1.24993 0.95225 0.98345 0.95751 1.69954 1.44696 1.34965 1.03782 0.86514 0.77746 0.85257 0.78053 1.20578 1.21197 1.19709 0.92804 0.92644 0.93000 0.92196 0.91968 0.91862 0.91488 0.91702 0.91438 0.92041 0.92066 0.91973 0.91775 0.92098 0.91183 0.77492 0.77505 0.92877 0.92897 0.96020 0.96009 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -0.92 5.69 -26.73 -0.15 -1.07 16 3 C -0.12 -1.02 4.60 -26.73 -0.12 -1.14 16 4 C -0.09 -0.79 1.77 -90.62 -0.16 -0.95 16 5 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 6 C -0.11 -0.83 4.96 -26.73 -0.13 -0.96 16 7 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 8 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 9 C -0.13 -1.45 5.49 -26.75 -0.15 -1.60 16 10 C 0.17 1.97 1.90 -67.95 -0.13 1.84 16 11 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 12 N -0.75 -9.60 4.31 -58.70 -0.25 -9.85 16 13 C 0.70 12.39 8.53 -86.92 -0.74 11.65 16 14 O -0.60 -13.03 16.01 5.29 0.08 -12.95 16 15 N -0.74 -13.35 5.56 -65.23 -0.36 -13.71 16 16 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 22 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.65 7.31 -51.93 -0.38 0.27 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.39 4.04 8.41 -40.82 -0.34 3.70 16 42 H 0.39 6.10 8.49 -40.82 -0.35 5.75 16 43 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -31.70 369.35 -10.23 -41.93 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.87 Total: 3.46 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.11 Total: -5.40 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.12 Total: -49.16 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.70 -10.23 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543181827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.008 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds