Wall clock time and date at job start Tue Mar 31 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46667 * 2 1 4 4 C 1.53005 * 109.46710 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46855 * 304.99854 * 4 3 2 6 6 C 1.52992 * 109.47292 * 65.00062 * 4 3 2 7 7 C 1.53005 * 109.47292 * 179.97438 * 6 4 3 8 8 C 1.53004 * 109.46705 * 300.00069 * 7 6 4 9 9 C 1.52992 * 109.47302 * 59.99937 * 8 7 6 10 10 C 1.53004 * 109.46705 * 185.00131 * 4 3 2 11 11 H 1.08997 * 109.47451 * 60.00485 * 10 4 3 12 12 N 1.46494 * 109.46982 * 299.99654 * 10 4 3 13 13 C 1.34784 * 119.99635 * 155.00372 * 12 10 4 14 14 O 1.21579 * 120.00114 * 0.02562 * 13 12 10 15 15 N 1.34777 * 119.99908 * 179.97438 * 13 12 10 16 16 C 1.46496 * 120.00258 * 179.97438 * 15 13 12 17 17 C 1.52993 * 109.47551 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47429 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99822 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00339 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00355 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47028 * 90.00481 * 22 20 18 24 24 H 1.48498 * 109.47131 * 210.00227 * 22 20 18 25 25 H 1.48500 * 109.47362 * 330.00383 * 22 20 18 26 26 H 1.09007 * 109.47681 * 60.00024 * 1 2 3 27 27 H 1.09000 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47359 * 299.99819 * 1 2 3 29 29 H 1.09002 * 109.47052 * 240.00461 * 2 1 3 30 30 H 1.08994 * 109.47164 * 119.99683 * 2 1 3 31 31 H 1.09002 * 109.47008 * 60.00434 * 3 2 1 32 32 H 1.08998 * 109.47492 * 299.99964 * 3 2 1 33 33 H 1.08997 * 109.47287 * 300.00105 * 6 4 3 34 34 H 1.09005 * 109.47340 * 60.00089 * 6 4 3 35 35 H 1.08996 * 109.46826 * 60.00076 * 7 6 4 36 36 H 1.09003 * 109.47189 * 180.02562 * 7 6 4 37 37 H 1.09002 * 109.46770 * 180.02562 * 8 7 6 38 38 H 1.09005 * 109.47238 * 299.99488 * 8 7 6 39 39 H 1.08997 * 109.47287 * 179.97438 * 9 8 7 40 40 H 1.09005 * 109.47340 * 59.99614 * 9 8 7 41 41 H 0.96995 * 120.00292 * 335.27805 * 12 10 4 42 42 H 0.96999 * 120.00047 * 0.02562 * 15 13 12 43 43 H 1.09000 * 109.47024 * 300.00478 * 16 15 13 44 44 H 1.09004 * 109.46875 * 60.00324 * 16 15 13 45 45 H 1.09000 * 109.47250 * 300.00222 * 17 16 15 46 46 H 1.09004 * 109.46862 * 60.00198 * 17 16 15 47 47 H 0.97005 * 120.00091 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0794 0.8332 -1.3082 7 6 5.6094 0.8338 -1.3091 8 6 6.1189 2.2711 -1.1837 9 6 5.6094 2.8805 0.1239 10 6 4.0799 2.8796 0.1251 11 1 3.7170 3.3138 1.0567 12 7 3.5911 3.6719 -1.0060 13 6 3.4624 5.0083 -0.8870 14 8 3.7524 5.5563 0.1589 15 7 3.0132 5.7374 -1.9277 16 6 2.8727 7.1898 -1.7983 17 6 2.3479 7.7707 -3.1128 18 6 2.2041 9.2649 -2.9798 19 1 2.4616 9.7516 -2.0507 20 6 1.7436 10.0106 -4.0442 21 7 1.6186 11.3147 -3.9283 22 14 1.2988 9.1689 -5.6514 23 1 -0.1338 8.7786 -5.6258 24 1 1.5375 10.1021 -6.7815 25 1 2.1390 7.9567 -5.8245 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 3.7160 -0.1905 -1.3978 34 1 3.7157 1.4228 -2.1499 35 1 5.9734 0.2445 -0.4676 36 1 5.9724 0.4001 -2.2409 37 1 7.2089 2.2716 -1.1848 38 1 5.7548 2.8604 -2.0253 39 1 5.9727 3.9042 0.2135 40 1 5.9734 2.2911 0.9656 41 1 3.3563 3.2344 -1.8392 42 1 2.7821 5.3003 -2.7623 43 1 2.1713 7.4169 -0.9954 44 1 3.8432 7.6296 -1.5682 45 1 3.0490 7.5436 -3.9159 46 1 1.3774 7.3309 -3.3425 47 1 1.2950 11.8394 -4.6773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543181829.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:42 Heat of formation + Delta-G solvation = -75.569139 kcal Electronic energy + Delta-G solvation = -22879.047992 eV Core-core repulsion = 19673.936953 eV Total energy + Delta-G solvation = -3205.111039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42867 -38.54265 -35.23093 -34.85057 -33.56807 -32.71335 -31.05554 -30.51693 -29.25362 -26.21095 -24.73350 -23.12547 -22.18745 -21.19423 -20.73214 -20.66389 -19.11456 -18.13964 -16.83425 -15.85359 -15.71308 -15.47887 -15.13568 -14.60220 -14.31997 -14.23236 -14.04709 -13.61827 -13.53110 -13.30350 -13.09068 -12.82835 -12.58165 -12.31817 -12.22670 -11.94067 -11.56293 -11.45035 -11.33709 -11.20303 -11.12910 -10.83484 -10.73695 -10.41446 -10.31237 -10.21564 -10.07239 -9.95003 -9.69007 -9.29716 -8.92975 -8.60606 -8.31551 -6.09065 -4.08814 3.07501 3.26324 3.33855 3.35290 3.60849 4.31754 4.39352 4.44197 4.53332 4.65328 4.74685 4.83894 4.96428 5.01847 5.09765 5.23935 5.24409 5.29414 5.35649 5.41122 5.44597 5.56206 5.58107 5.65251 5.74935 5.81595 5.87159 5.88299 5.97472 6.04585 6.06880 6.12587 6.15364 6.21145 6.25124 6.28972 6.61619 6.73961 6.87965 7.11394 7.28058 7.36828 7.70200 8.37307 8.49491 8.95528 9.00908 9.51227 11.04068 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.003482 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.866749 B = 8039.815999 C = 8606.951345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.094 4.094 5 H 0.082 0.918 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.132 4.132 10 C 0.172 3.828 11 H 0.086 0.914 12 N -0.743 5.743 13 C 0.699 3.301 14 O -0.596 6.596 15 N -0.744 5.744 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.267 1.267 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.391 0.609 42 H 0.390 0.610 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.021 0.979 46 H 0.016 0.984 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 -27.008 4.920 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.112 4.112 5 H 0.101 0.899 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.155 4.155 9 C -0.171 4.171 10 C 0.066 3.934 11 H 0.104 0.896 12 N -0.400 5.400 13 C 0.399 3.601 14 O -0.474 6.474 15 N -0.398 5.398 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.560 4.560 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.225 0.775 42 H 0.222 0.778 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.035 0.965 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.182 -26.283 5.805 27.239 hybrid contribution -0.504 -0.637 -1.732 1.913 sum 3.678 -26.920 4.073 27.473 Atomic orbital electron populations 1.21782 0.96003 1.01362 1.01995 1.21577 0.95766 0.96987 1.01844 1.21648 0.94315 0.96581 1.02698 1.21473 0.95572 0.95354 0.98848 0.89924 1.21636 0.95619 1.00844 0.97224 1.21551 0.95475 0.97066 1.01570 1.21485 0.99997 0.95700 0.98349 1.21935 0.95718 1.01785 0.97622 1.20704 0.93071 0.89623 0.90008 0.89600 1.45237 1.72285 1.05658 1.16825 1.16056 0.78496 0.81206 0.84338 1.90891 1.57359 1.70860 1.28299 1.45522 1.70383 1.09521 1.14352 1.21338 1.00854 0.75198 0.99960 1.19789 0.95917 0.97539 0.92667 1.20929 1.44574 0.89374 1.01100 0.90596 1.25000 0.94920 0.94719 0.98670 1.69907 1.46556 1.05303 1.31995 0.86748 0.79123 0.79691 0.83471 1.20257 1.21303 1.19123 0.92718 0.92996 0.92753 0.91917 0.92219 0.91744 0.91738 0.91547 0.92133 0.92059 0.92193 0.92302 0.91860 0.91127 0.91494 0.77485 0.77762 0.92278 0.92250 0.96096 0.96530 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.86 5.69 -26.73 -0.15 -1.01 16 3 C -0.11 -0.93 4.45 -26.73 -0.12 -1.05 16 4 C -0.09 -0.73 1.98 -90.62 -0.18 -0.91 16 5 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 6 C -0.12 -0.80 4.79 -26.73 -0.13 -0.93 16 7 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 8 C -0.12 -1.06 5.76 -26.73 -0.15 -1.21 16 9 C -0.13 -1.37 5.60 -26.76 -0.15 -1.52 16 10 C 0.17 1.84 2.23 -67.96 -0.15 1.69 16 11 H 0.09 1.12 7.58 -51.93 -0.39 0.72 16 12 N -0.74 -8.88 3.62 -58.70 -0.21 -9.09 16 13 C 0.70 11.76 8.53 -86.91 -0.74 11.02 16 14 O -0.60 -12.54 16.01 5.30 0.08 -12.46 16 15 N -0.74 -12.56 5.56 -65.23 -0.36 -12.92 16 16 C 0.15 3.13 5.61 -4.05 -0.02 3.11 16 17 C -0.02 -0.49 4.15 -27.89 -0.12 -0.61 16 18 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 19 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 22 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.57 7.60 -51.93 -0.39 0.17 16 33 H 0.07 0.41 6.56 -51.93 -0.34 0.07 16 34 H 0.06 0.43 6.51 -51.93 -0.34 0.09 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.64 7.60 -51.93 -0.39 0.24 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.39 3.79 6.67 -40.82 -0.27 3.52 16 42 H 0.39 5.47 8.49 -40.82 -0.35 5.13 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 46 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 361.62 15.07 5.45 5.45 Total: -1.00 -32.26 361.62 -9.74 -42.00 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.67 Total: 3.68 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.13 Total: -6.38 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.20 Total: -48.80 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.26 -9.74 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543181829.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.569 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds