Wall clock time and date at job start Tue Mar 31 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46754 * 2 1 4 4 C 1.53002 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47067 * 305.00198 * 4 3 2 6 6 C 1.53005 * 109.46982 * 64.99850 * 4 3 2 7 7 C 1.52999 * 109.47159 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47317 * 300.00546 * 7 6 4 9 9 C 1.53000 * 109.47060 * 59.99960 * 8 7 6 10 10 C 1.52997 * 109.47143 * 185.00181 * 4 3 2 11 11 H 1.09002 * 109.46695 * 299.99691 * 10 4 3 12 12 N 1.46492 * 109.47244 * 60.00207 * 10 4 3 13 13 C 1.34777 * 120.00063 * 205.00147 * 12 10 4 14 14 O 1.21585 * 119.99969 * 359.97438 * 13 12 10 15 15 N 1.34777 * 120.00285 * 179.97438 * 13 12 10 16 16 C 1.46502 * 119.99996 * 179.97438 * 15 13 12 17 17 C 1.53003 * 109.46661 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46600 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00489 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99473 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00425 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99569 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47554 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47107 * 120.00250 * 22 20 18 25 25 H 1.48500 * 109.47007 * 239.99756 * 22 20 18 26 26 H 1.09002 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47511 * 299.99774 * 1 2 3 28 28 H 1.09000 * 109.47059 * 60.00039 * 1 2 3 29 29 H 1.08996 * 109.47073 * 240.00053 * 2 1 3 30 30 H 1.09000 * 109.47059 * 119.99961 * 2 1 3 31 31 H 1.09000 * 109.46927 * 59.99869 * 3 2 1 32 32 H 1.09000 * 109.47306 * 299.99810 * 3 2 1 33 33 H 1.09000 * 109.47360 * 300.00293 * 6 4 3 34 34 H 1.09002 * 109.46935 * 60.00267 * 6 4 3 35 35 H 1.08996 * 109.46929 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.46716 * 60.00455 * 7 6 4 37 37 H 1.09002 * 109.47153 * 299.99641 * 8 7 6 38 38 H 1.09001 * 109.46832 * 179.97438 * 8 7 6 39 39 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 40 40 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 41 41 H 0.97005 * 120.00409 * 24.99591 * 12 10 4 42 42 H 0.97000 * 120.00048 * 0.02562 * 15 13 12 43 43 H 1.08992 * 109.47469 * 300.00162 * 16 15 13 44 44 H 1.08996 * 109.46777 * 60.00693 * 16 15 13 45 45 H 1.09002 * 109.47130 * 299.99980 * 17 16 15 46 46 H 1.08996 * 109.47265 * 60.00617 * 17 16 15 47 47 H 0.97005 * 120.00188 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8427 6 6 4.0805 0.8328 -1.3064 7 6 5.6105 0.8334 -1.3061 8 6 6.1199 2.2706 -1.1806 9 6 5.6094 2.8804 0.1265 10 6 4.0798 2.8797 0.1264 11 1 3.7168 3.4689 -0.7157 12 7 3.5910 3.4635 1.3779 13 6 3.4622 4.8002 1.4928 14 8 3.7521 5.5215 0.5580 15 7 3.0120 5.3373 2.6440 16 6 2.8725 6.7903 2.7691 17 6 2.3474 7.1339 4.1645 18 6 2.2033 8.6285 4.2929 19 1 2.4601 9.2692 3.4623 20 6 1.7426 9.1779 5.4707 21 7 1.4285 8.3977 6.4817 22 14 1.5633 11.0305 5.6296 23 1 1.9778 11.6788 4.3595 24 1 0.1460 11.3678 5.9175 25 1 2.4230 11.5177 6.7382 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.7173 -0.1910 -1.3960 34 1 3.7175 1.4221 -2.1485 35 1 5.9742 0.3986 -2.2370 36 1 5.9738 0.2443 -0.4640 37 1 5.7566 2.8598 -2.0227 38 1 7.2099 2.2710 -1.1799 39 1 5.9727 2.2913 0.9685 40 1 5.9720 3.9045 0.2156 41 1 3.3600 2.8881 2.1239 42 1 2.7810 4.7619 3.3900 43 1 3.8433 7.2627 2.6201 44 1 2.1721 7.1540 2.0173 45 1 1.3765 6.6614 4.3139 46 1 3.0480 6.7702 4.9161 47 1 1.1048 8.7843 7.3104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543181830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:46 Heat of formation + Delta-G solvation = -82.955249 kcal Electronic energy + Delta-G solvation = -22555.148634 eV Core-core repulsion = 19349.717309 eV Total energy + Delta-G solvation = -3205.431325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.16472 -38.53999 -35.12837 -34.81035 -33.93135 -32.76976 -31.00277 -30.11699 -28.72557 -26.15025 -24.64626 -23.11630 -22.05235 -20.91873 -20.75312 -20.38668 -20.06308 -17.84204 -16.47076 -16.18183 -15.47825 -15.13720 -14.96497 -14.51817 -14.40547 -14.23359 -14.01302 -13.63547 -13.39635 -13.27027 -13.04318 -12.84679 -12.54253 -12.25601 -12.02490 -11.60605 -11.36444 -11.30491 -11.14969 -11.12830 -11.03019 -10.87644 -10.65952 -10.59534 -10.48934 -10.27696 -10.14449 -9.83615 -9.51237 -9.21370 -8.87838 -8.46021 -8.19030 -6.07392 -4.09709 3.11776 3.29864 3.37494 3.43232 3.66983 4.34755 4.41075 4.49722 4.60355 4.75101 4.79467 4.93558 5.00476 5.05538 5.11153 5.27659 5.29837 5.32434 5.36686 5.43470 5.52445 5.54954 5.67012 5.68860 5.82888 5.86679 5.91605 5.94380 5.96664 6.05461 6.10317 6.17632 6.21647 6.31232 6.38039 6.43949 6.76053 6.82548 7.06491 7.32607 7.60719 7.66427 7.92341 8.29187 8.51369 8.95972 9.08323 9.54983 11.04336 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022038 B = 0.003043 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.242146 B = 9197.849214 C =10123.202960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.093 4.093 5 H 0.073 0.927 6 C -0.111 4.111 7 C -0.121 4.121 8 C -0.117 4.117 9 C -0.131 4.131 10 C 0.172 3.828 11 H 0.085 0.915 12 N -0.748 5.748 13 C 0.699 3.301 14 O -0.599 6.599 15 N -0.740 5.740 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.392 0.608 42 H 0.392 0.608 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 -20.586 -13.216 24.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.112 4.112 5 H 0.092 0.908 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.155 4.155 9 C -0.170 4.170 10 C 0.066 3.934 11 H 0.103 0.897 12 N -0.403 5.403 13 C 0.398 3.602 14 O -0.478 6.478 15 N -0.394 5.394 16 C 0.018 3.982 17 C -0.025 4.025 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.225 0.775 42 H 0.225 0.775 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.516 -19.852 -13.898 24.651 hybrid contribution -0.351 0.471 1.026 1.182 sum 4.165 -19.381 -12.872 23.636 Atomic orbital electron populations 1.21783 0.95996 1.01352 1.02010 1.21575 0.95772 0.96975 1.01826 1.21666 0.94319 0.96618 1.02781 1.21446 0.95575 0.95377 0.98796 0.90820 1.21591 0.95426 1.00885 0.97016 1.21570 0.95625 0.97000 1.01630 1.21495 1.00230 0.95835 0.97919 1.21952 0.95740 1.01729 0.97556 1.20721 0.92994 0.92793 0.86895 0.89658 1.45218 1.72549 1.05600 1.16971 1.16082 0.78517 0.81838 0.83720 1.90877 1.57608 1.60014 1.39254 1.45540 1.69928 1.09887 1.14002 1.21561 1.00297 0.75729 1.00617 1.19327 0.96538 0.97213 0.89401 1.21102 1.44023 0.91495 0.99177 0.92178 1.24999 0.95238 0.98354 0.95758 1.69967 1.44711 1.34881 1.03823 0.86463 0.77709 0.85252 0.78182 1.19559 1.20964 1.20958 0.93001 0.92638 0.92809 0.91969 0.92195 0.91494 0.91858 0.91439 0.91703 0.92066 0.92041 0.91774 0.91973 0.92097 0.91183 0.77492 0.77506 0.92890 0.92878 0.96009 0.96010 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.12 -0.92 5.69 -26.73 -0.15 -1.07 16 3 C -0.12 -1.02 4.60 -26.73 -0.12 -1.14 16 4 C -0.09 -0.79 1.77 -90.62 -0.16 -0.95 16 5 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 6 C -0.11 -0.83 4.96 -26.73 -0.13 -0.96 16 7 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 8 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 9 C -0.13 -1.45 5.49 -26.75 -0.15 -1.60 16 10 C 0.17 1.97 1.90 -67.96 -0.13 1.84 16 11 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 12 N -0.75 -9.59 4.31 -58.70 -0.25 -9.85 16 13 C 0.70 12.39 8.53 -86.92 -0.74 11.65 16 14 O -0.60 -13.03 16.01 5.29 0.08 -12.94 16 15 N -0.74 -13.35 5.56 -65.23 -0.36 -13.71 16 16 C 0.14 3.09 5.61 -4.04 -0.02 3.07 16 17 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 22 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 6.57 -51.93 -0.34 0.08 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.65 7.30 -51.93 -0.38 0.27 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.44 6.57 -51.93 -0.34 0.10 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.39 4.04 8.41 -40.82 -0.34 3.70 16 42 H 0.39 6.09 8.49 -40.82 -0.35 5.75 16 43 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 369.35 15.07 5.57 5.57 Total: -1.00 -31.71 369.35 -10.23 -41.94 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.87 Total: 3.43 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.11 Total: -5.39 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.12 Total: -49.14 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.71 -10.23 -41.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543181830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.016 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds