Wall clock time and date at job start Tue Mar 31 2020 05:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47517 * 2 1 4 4 C 1.53000 * 109.47549 * 239.99466 * 2 1 3 5 5 C 1.50707 * 109.46565 * 60.00345 * 4 2 1 6 6 H 1.07998 * 120.00016 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99716 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00175 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99588 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47472 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47069 * 120.00350 * 9 7 5 12 12 H 1.48499 * 109.47385 * 239.99900 * 9 7 5 13 13 C 1.53005 * 109.47129 * 119.99930 * 2 1 3 14 14 N 1.46503 * 109.46592 * 300.00266 * 13 2 1 15 15 C 1.34783 * 119.99449 * 179.97438 * 14 13 2 16 16 O 1.21590 * 119.99935 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99768 * 179.97438 * 15 14 13 18 18 C 1.46499 * 119.99872 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.46840 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.46886 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.46886 * 180.02562 * 20 19 18 22 22 C 1.53002 * 117.49654 * 243.73967 * 21 20 19 23 23 C 1.53012 * 117.49602 * 175.08431 * 21 20 19 24 24 H 1.08997 * 109.47608 * 300.00478 * 1 2 3 25 25 H 1.08999 * 109.46920 * 60.00361 * 1 2 3 26 26 H 1.08996 * 109.47454 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47680 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47142 * 299.99877 * 3 2 1 29 29 H 1.09007 * 109.46959 * 59.99400 * 3 2 1 30 30 H 1.09001 * 109.47753 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47354 * 300.00810 * 4 2 1 32 32 H 0.96992 * 120.00087 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47248 * 180.02562 * 13 2 1 34 34 H 1.08996 * 109.46721 * 59.99835 * 13 2 1 35 35 H 0.96992 * 120.00655 * 359.97438 * 14 13 2 36 36 H 0.97000 * 119.99708 * 359.97438 * 17 15 14 37 37 H 1.09002 * 109.47391 * 59.99686 * 18 17 15 38 38 H 1.09001 * 109.46813 * 299.99742 * 18 17 15 39 39 H 1.09001 * 109.47194 * 299.99493 * 19 18 17 40 40 H 1.08992 * 109.47399 * 59.99666 * 19 18 17 41 41 H 1.09001 * 109.47109 * 299.99380 * 20 19 18 42 42 H 1.09002 * 109.47508 * 59.99571 * 20 19 18 43 43 H 1.08997 * 115.55341 * 29.41508 * 21 20 19 44 44 H 1.09000 * 117.49888 * 0.02562 * 22 21 20 45 45 H 1.08997 * 117.49823 * 145.01961 * 22 21 20 46 46 H 1.08998 * 117.49442 * 214.98050 * 23 21 20 47 47 H 1.08998 * 117.49828 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8705 -0.4823 -3.7320 8 7 2.6265 -1.5516 -3.8526 9 14 1.2473 0.3979 -5.2571 10 1 0.4229 1.5651 -4.8530 11 1 2.4020 0.8643 -6.0660 12 1 0.4220 -0.5357 -6.0650 13 6 2.0399 -0.7213 1.2493 14 7 1.5515 -0.0306 2.4454 15 6 1.8767 -0.4914 3.6696 16 8 2.5750 -1.4805 3.7811 17 7 1.4278 0.1443 4.7700 18 6 1.7817 -0.3562 6.1006 19 6 1.1483 0.5393 7.1673 20 6 1.5185 0.0170 8.5569 21 6 0.8846 0.9122 9.6237 22 6 1.8272 1.6873 10.5465 23 6 1.0421 0.4889 11.0856 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7210 -1.2494 31 1 1.6766 -1.7489 -1.2492 32 1 2.8603 -1.8834 -4.7335 33 1 3.1299 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2493 35 1 0.9941 0.7582 2.3564 36 1 0.8710 0.9336 4.6809 37 1 2.8656 -0.3480 6.2155 38 1 1.4118 -1.3750 6.2157 39 1 1.5178 1.5584 7.0523 40 1 0.0646 0.5307 7.0523 41 1 1.1493 -1.0021 8.6723 42 1 2.6024 0.0260 8.6717 43 1 -0.0495 1.3954 9.3374 44 1 2.8989 1.5598 10.3934 45 1 1.5131 2.6804 10.8676 46 1 0.2116 0.6941 11.7611 47 1 1.5975 -0.4269 11.2874 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558542023.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:00 Heat of formation + Delta-G solvation = -41.941303 kcal Electronic energy + Delta-G solvation = -21732.966437 eV Core-core repulsion = 18529.313610 eV Total energy + Delta-G solvation = -3203.652826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.84653 -38.20927 -37.25057 -35.38317 -33.56301 -32.42421 -31.75539 -27.36526 -26.85801 -26.48878 -25.49231 -22.92855 -22.76641 -21.97178 -21.01269 -20.45162 -18.69349 -17.57170 -16.42975 -16.24156 -15.99206 -15.65036 -14.94759 -14.79474 -14.50684 -14.05104 -14.00906 -13.74979 -13.01607 -12.98215 -12.73411 -12.48366 -12.20211 -12.10951 -12.05255 -11.92615 -11.40169 -11.32878 -11.11187 -11.00743 -10.82591 -10.62672 -10.61734 -10.37765 -10.27454 -10.21930 -9.99423 -9.85467 -9.18319 -9.13104 -8.89814 -8.50439 -8.34980 -5.98746 -3.99894 2.88842 3.30791 3.38841 3.39313 3.41225 3.45613 4.18348 4.42321 4.47354 4.51597 4.55995 4.69968 4.78850 4.95366 5.23321 5.24461 5.36797 5.37716 5.44862 5.51017 5.52767 5.56063 5.67317 5.71328 5.77651 5.80290 5.89947 5.96899 6.20413 6.24906 6.31306 6.44365 6.51294 6.63006 6.65105 6.83781 7.07855 7.09777 7.09844 7.18406 7.66481 7.78897 8.00262 8.23077 8.42171 8.83622 9.05216 9.63081 11.12747 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.053760 B = 0.002214 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.711815 B =12641.124282 C =12879.774913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.147 3.853 14 N -0.737 5.737 15 C 0.699 3.301 16 O -0.595 6.595 17 N -0.753 5.753 18 C 0.139 3.861 19 C -0.127 4.127 20 C -0.086 4.086 21 C -0.152 4.152 22 C -0.182 4.182 23 C -0.183 4.183 24 H 0.028 0.972 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.259 0.741 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.393 0.607 36 H 0.394 0.606 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.801 7.229 25.169 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.023 3.977 14 N -0.393 5.393 15 C 0.398 3.602 16 O -0.474 6.474 17 N -0.410 5.410 18 C 0.014 3.986 19 C -0.165 4.165 20 C -0.124 4.124 21 C -0.170 4.170 22 C -0.219 4.219 23 C -0.220 4.220 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.228 0.772 36 H 0.227 0.773 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.052 6.171 25.120 26.183 hybrid contribution -0.813 1.164 -0.988 1.729 sum -4.865 7.335 24.133 25.688 Atomic orbital electron populations 1.21749 0.95322 1.01142 1.00122 1.20914 0.95456 0.95868 0.95079 1.21752 1.00538 0.95920 1.00121 1.19098 0.96403 0.95256 0.89452 1.21229 1.31061 1.12040 0.90516 0.92206 1.25025 0.95362 0.95109 0.99107 1.69973 1.37017 1.23045 1.23310 0.86588 0.78582 0.79653 0.83452 1.19825 1.21161 1.21156 1.21483 0.98638 0.95634 0.81908 1.45371 1.56172 1.33135 1.04584 1.16036 0.80512 0.83015 0.80619 1.90914 1.42844 1.27550 1.86045 1.45118 1.57510 1.33254 1.05100 1.21138 0.99910 0.97581 0.79946 1.21769 1.01223 0.99784 0.93761 1.21083 1.00492 0.98638 0.92214 1.22345 1.00849 1.02573 0.91283 1.23063 0.98056 0.96373 1.04430 1.22986 1.03217 0.99243 0.96557 0.95306 0.91508 0.93371 0.93373 0.91502 0.95315 0.96292 0.96293 0.93107 0.92057 0.92050 0.77209 0.77332 0.91839 0.91807 0.91171 0.91227 0.91132 0.91388 0.87779 0.88723 0.88985 0.88922 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.15 0.30 -1.92 16 2 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.58 7.65 -34.43 -0.26 -13.85 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 14 N -0.74 -11.03 4.96 -65.22 -0.32 -11.36 16 15 C 0.70 11.05 8.57 -86.91 -0.74 10.30 16 16 O -0.60 -12.09 16.34 5.29 0.09 -12.00 16 17 N -0.75 -8.42 5.56 -65.22 -0.36 -8.78 16 18 C 0.14 1.37 5.67 -4.04 -0.02 1.35 16 19 C -0.13 -0.84 5.29 -26.73 -0.14 -0.99 16 20 C -0.09 -0.54 5.49 -26.73 -0.15 -0.69 16 21 C -0.15 -0.92 5.73 -90.61 -0.52 -1.44 16 22 C -0.18 -1.06 10.18 -26.69 -0.27 -1.34 16 23 C -0.18 -1.05 10.26 -26.69 -0.27 -1.33 16 24 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 25 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 4.88 6.18 -40.82 -0.25 4.62 16 36 H 0.39 3.23 8.49 -40.82 -0.35 2.88 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.44 7.88 -51.93 -0.41 0.03 16 43 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 44 H 0.09 0.54 8.03 -51.93 -0.42 0.13 16 45 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -31.94 374.13 -9.94 -41.88 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.60 Total: 2.61 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -2.10 Total: -8.44 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.05 Total: -45.91 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.94 -9.94 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558542023.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.060 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds