Wall clock time and date at job start Tue Mar 31 2020 05:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46842 * 2 1 4 4 C 1.53004 * 109.47076 * 240.00542 * 2 1 3 5 5 C 1.52997 * 109.47424 * 120.00334 * 2 1 3 6 6 N 1.46498 * 109.46938 * 60.00281 * 5 2 1 7 7 C 1.34782 * 119.99675 * 180.02562 * 6 5 2 8 8 O 1.21582 * 120.00071 * 4.97931 * 7 6 5 9 9 N 1.34774 * 119.99915 * 184.98301 * 7 6 5 10 10 C 1.46926 * 120.63121 * 174.77166 * 9 7 6 11 11 C 1.53195 * 108.89465 * 126.33965 * 10 9 7 12 12 C 1.53354 * 109.14570 * 54.57617 * 11 10 9 13 13 C 1.53002 * 109.41659 * 178.67459 * 12 11 10 14 14 C 1.50705 * 109.47219 * 295.13248 * 13 12 11 15 15 H 1.08004 * 119.99805 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00149 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99894 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 119.99932 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47110 * 90.00084 * 18 16 14 20 20 H 1.48504 * 109.47198 * 210.00044 * 18 16 14 21 21 H 1.48500 * 109.47417 * 330.00188 * 18 16 14 22 22 C 1.53040 * 109.60905 * 298.70899 * 12 11 10 23 23 C 1.46926 * 120.63157 * 354.78914 * 9 7 6 24 24 H 1.08999 * 109.47154 * 299.99316 * 1 2 3 25 25 H 1.08992 * 109.47358 * 60.00051 * 1 2 3 26 26 H 1.09006 * 109.46664 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47452 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47313 * 300.00604 * 3 2 1 29 29 H 1.09007 * 109.46775 * 60.00125 * 3 2 1 30 30 H 1.08996 * 109.46966 * 299.99448 * 4 2 1 31 31 H 1.09001 * 109.47042 * 59.99808 * 4 2 1 32 32 H 1.08998 * 109.46671 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.46974 * 300.00353 * 5 2 1 34 34 H 1.08998 * 109.47220 * 180.02562 * 5 2 1 35 35 H 0.96993 * 120.00686 * 359.97438 * 6 5 2 36 36 H 1.08999 * 109.58363 * 246.19988 * 10 9 7 37 37 H 1.09002 * 109.58625 * 6.48116 * 10 9 7 38 38 H 1.08997 * 109.49623 * 174.65400 * 11 10 9 39 39 H 1.09002 * 109.49577 * 294.75334 * 11 10 9 40 40 H 1.08994 * 109.42367 * 58.75582 * 12 11 10 41 41 H 1.09008 * 109.47043 * 55.12644 * 13 12 11 42 42 H 1.08992 * 109.47289 * 175.12966 * 13 12 11 43 43 H 0.97001 * 120.00130 * 180.02562 * 17 16 14 44 44 H 1.08993 * 109.50186 * 301.42491 * 22 12 11 45 45 H 1.09004 * 109.52060 * 181.34332 * 22 12 11 46 46 H 1.09010 * 109.58451 * 353.37613 * 23 9 7 47 47 H 1.08999 * 109.58904 * 113.65827 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 7 1.5518 -2.1025 1.2490 7 6 1.8771 -2.9323 2.2601 8 8 2.4990 -2.5111 3.2161 9 7 1.5131 -4.2290 2.2113 10 6 1.9570 -5.1708 3.2480 11 6 0.7310 -5.8794 3.8324 12 6 -0.0676 -6.5246 2.6932 13 6 -1.2760 -7.2622 3.2734 14 6 -0.8015 -8.4073 4.1306 15 1 0.2562 -8.5908 4.2494 16 6 -1.7176 -9.2206 4.7632 17 7 -1.3035 -10.2201 5.5109 18 14 -3.5469 -8.9028 4.5584 19 1 -4.0533 -9.6628 3.3874 20 1 -4.2656 -9.3414 5.7817 21 1 -3.7762 -7.4514 4.3432 22 6 -0.5483 -5.4411 1.7251 23 6 0.6650 -4.7279 1.1201 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4427 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6768 -1.7488 -1.2494 31 1 1.6766 -0.2072 -2.1393 32 1 3.1300 -0.7207 -1.2495 33 1 1.6767 -0.2075 2.1392 34 1 3.1301 -0.7209 1.2493 35 1 0.9939 -2.4197 0.5218 36 1 2.6299 -5.9072 2.8087 37 1 2.4757 -4.6271 4.0376 38 1 1.0550 -6.6475 4.5345 39 1 0.1038 -5.1536 4.3503 40 1 0.5679 -7.2317 2.1603 41 1 -1.8649 -6.5741 3.8799 42 1 -1.8911 -7.6476 2.4603 43 1 -1.9480 -10.7926 5.9557 44 1 -1.1635 -4.7197 2.2628 45 1 -1.1358 -5.8986 0.9290 46 1 0.3290 -3.8917 0.5069 47 1 1.2332 -5.4264 0.5058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566150893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:57 Heat of formation + Delta-G solvation = -55.047826 kcal Electronic energy + Delta-G solvation = -23098.880010 eV Core-core repulsion = 19894.658842 eV Total energy + Delta-G solvation = -3204.221168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.38263 -38.33627 -37.13925 -34.15040 -33.46880 -32.04144 -30.67175 -28.63804 -27.69238 -27.62545 -26.25565 -24.46604 -22.76635 -21.63803 -19.98293 -19.69476 -18.99123 -17.88719 -16.68991 -16.23830 -15.68725 -15.08232 -14.73694 -14.49881 -14.34820 -14.04790 -13.80142 -13.54328 -13.47110 -13.22618 -12.91207 -12.80493 -12.54531 -12.36339 -12.09265 -12.04169 -12.00910 -11.48518 -11.23269 -11.15791 -11.11167 -10.98393 -10.84440 -10.64414 -10.34255 -9.99078 -9.79083 -9.67207 -9.47660 -9.10966 -9.05421 -8.52772 -8.25933 -6.03370 -4.00681 2.76725 3.30095 3.33131 3.38283 3.41598 3.94154 4.32237 4.43966 4.45682 4.50665 4.95099 5.03499 5.19554 5.24069 5.25906 5.27955 5.32383 5.40729 5.45370 5.49549 5.54746 5.56254 5.62350 5.65458 5.71676 5.77196 5.82478 5.91378 5.95844 5.98523 6.07551 6.24318 6.33742 6.42470 6.48648 6.58596 6.84476 6.89620 6.99795 7.12783 7.24642 7.45001 7.80643 8.03466 8.54838 8.71157 9.01714 9.59621 11.09970 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031111 B = 0.003337 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.777362 B = 8388.155544 C = 8815.374342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.142 4.142 5 C 0.149 3.851 6 N -0.749 5.749 7 C 0.706 3.294 8 O -0.596 6.596 9 N -0.623 5.623 10 C 0.126 3.874 11 C -0.119 4.119 12 C -0.071 4.071 13 C -0.009 4.009 14 C -0.515 4.515 15 H 0.074 0.926 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.133 4.133 23 C 0.115 3.885 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.394 0.606 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.015 0.985 42 H 0.010 0.990 43 H 0.262 0.738 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 20.165 -14.856 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.196 4.196 4 C -0.199 4.199 5 C 0.024 3.976 6 N -0.408 5.408 7 C 0.407 3.593 8 O -0.475 6.475 9 N -0.360 5.360 10 C 0.004 3.996 11 C -0.157 4.157 12 C -0.090 4.090 13 C -0.046 4.046 14 C -0.553 4.553 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.543 5.543 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.171 4.171 23 C -0.009 4.009 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.054 20.327 -14.040 25.216 hybrid contribution -1.419 -0.216 -0.423 1.496 sum 3.635 20.111 -14.462 25.037 Atomic orbital electron populations 1.21889 0.94024 1.01959 1.02139 1.20830 0.96303 0.96120 0.95052 1.21797 1.01272 0.94367 1.02204 1.21885 1.01357 1.00063 0.96634 1.21208 0.98693 0.80539 0.97143 1.45341 1.57305 1.12312 1.25850 1.15847 0.79865 0.80842 0.82725 1.90887 1.47092 1.75698 1.33793 1.47355 1.53457 1.07076 1.28162 1.21651 0.97181 0.90687 0.90084 1.21969 0.95596 0.99593 0.98583 1.21043 0.98456 0.94842 0.94637 1.19617 0.93480 0.95731 0.95797 1.21142 0.95212 1.10992 1.27980 0.90803 1.25030 0.98783 0.94873 0.94871 1.69912 1.34426 1.17873 1.32123 0.86806 0.86032 0.79049 0.77524 1.20423 1.21503 1.19114 1.22062 0.96327 0.98885 0.99820 1.21641 0.92384 0.98002 0.88839 0.92240 0.92337 0.92676 0.92285 0.92148 0.92248 0.92688 0.92346 0.92309 0.91685 0.91837 0.76835 0.91980 0.89472 0.89254 0.92447 0.91742 0.96719 0.97137 0.92811 0.92030 0.91154 0.91729 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.30 37.16 0.31 -0.68 16 2 C -0.08 -0.59 0.78 -154.50 -0.12 -0.71 16 3 C -0.14 -0.84 8.47 37.16 0.31 -0.53 16 4 C -0.14 -0.92 8.30 37.16 0.31 -0.61 16 5 C 0.15 1.49 4.57 -4.04 -0.02 1.48 16 6 N -0.75 -8.55 4.87 -65.23 -0.32 -8.86 16 7 C 0.71 10.94 8.29 -86.91 -0.72 10.22 16 8 O -0.60 -11.50 15.77 5.29 0.08 -11.42 16 9 N -0.62 -9.21 2.97 -178.49 -0.53 -9.74 16 10 C 0.13 2.03 6.43 -3.71 -0.02 2.01 16 11 C -0.12 -2.18 5.21 -26.45 -0.14 -2.32 16 12 C -0.07 -1.32 2.10 -90.41 -0.19 -1.51 16 13 C -0.01 -0.21 3.52 -27.88 -0.10 -0.30 16 14 C -0.52 -14.20 8.94 -34.44 -0.31 -14.51 16 15 H 0.07 2.17 7.30 -52.48 -0.38 1.79 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 18 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 22 C -0.13 -1.94 5.36 -26.61 -0.14 -2.09 16 23 C 0.11 1.40 6.39 -3.71 -0.02 1.38 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.39 6.86 -51.93 -0.36 0.04 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.05 0.36 6.86 -51.93 -0.36 0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.39 3.68 3.65 -40.82 -0.15 3.53 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.49 6.99 -51.93 -0.36 1.12 16 38 H 0.09 1.80 6.93 -51.93 -0.36 1.44 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.01 0.35 7.20 -51.92 -0.37 -0.03 16 42 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.61 5.65 -51.92 -0.29 0.32 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -32.41 357.39 -8.76 -41.17 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.54 Total: -0.20 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -0.95 Total: -6.38 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.07 Total: -45.50 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.41 -8.76 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566150893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.878 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds