Wall clock time and date at job start Tue Mar 31 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46884 * 2 1 4 4 C 1.52998 * 109.47460 * 120.00124 * 2 1 3 5 5 C 1.53000 * 109.47080 * 175.00302 * 4 2 1 6 6 N 1.46502 * 109.46534 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99582 * 180.02562 * 6 5 4 8 8 O 1.21586 * 120.00164 * 355.00931 * 7 6 5 9 9 N 1.34779 * 119.99935 * 175.01517 * 7 6 5 10 10 C 1.46924 * 120.63167 * 4.93900 * 9 7 6 11 11 C 1.53616 * 108.54541 * 126.37085 * 10 9 7 12 12 C 1.53042 * 109.24359 * 54.85470 * 11 10 9 13 13 C 1.52998 * 109.46369 * 178.49198 * 12 11 10 14 14 C 1.50702 * 109.46929 * 295.06926 * 13 12 11 15 15 H 1.07999 * 119.99991 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99977 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99898 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46719 * 60.00711 * 18 16 14 20 20 H 1.48500 * 109.46951 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47383 * 300.00653 * 18 16 14 22 22 C 1.53041 * 109.53743 * 298.51442 * 12 11 10 23 23 C 1.46933 * 120.62793 * 185.21977 * 9 7 6 24 24 H 1.08995 * 109.47385 * 299.99805 * 1 2 3 25 25 H 1.09000 * 109.47368 * 60.00000 * 1 2 3 26 26 H 1.09000 * 109.46734 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47301 * 240.00672 * 2 1 3 28 28 H 1.09000 * 109.47158 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47119 * 300.00153 * 3 2 1 30 30 H 1.08995 * 109.46951 * 59.99929 * 3 2 1 31 31 H 1.09003 * 109.47108 * 54.99912 * 4 2 1 32 32 H 1.08999 * 109.46766 * 295.00045 * 4 2 1 33 33 H 1.08999 * 109.47112 * 299.99531 * 5 4 2 34 34 H 1.08994 * 109.47056 * 60.00301 * 5 4 2 35 35 H 0.96998 * 120.00461 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.58342 * 246.20741 * 10 9 7 37 37 H 1.09000 * 109.58624 * 6.62742 * 10 9 7 38 38 H 1.08997 * 109.63418 * 294.86350 * 11 10 9 39 39 H 1.09000 * 109.46166 * 174.74241 * 11 10 9 40 40 H 1.08995 * 109.44720 * 58.52278 * 12 11 10 41 41 H 1.08998 * 109.46923 * 55.06533 * 13 12 11 42 42 H 1.08998 * 109.47567 * 175.07071 * 13 12 11 43 43 H 0.96997 * 120.00126 * 179.97438 * 17 16 14 44 44 H 1.09006 * 109.49766 * 301.40955 * 22 12 11 45 45 H 1.09004 * 109.52237 * 181.33049 * 22 12 11 46 46 H 1.08993 * 109.58692 * 353.36934 * 23 9 7 47 47 H 1.08997 * 109.58523 * 113.65632 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8309 1.1879 6 7 4.0532 -1.5221 2.3837 7 6 5.3741 -1.7337 2.5476 8 8 6.1523 -1.4330 1.6631 9 7 5.8324 -2.2786 3.6920 10 6 4.8983 -2.7463 4.7251 11 6 5.2351 -4.2065 5.0633 12 6 6.7102 -4.3052 5.4591 13 6 7.0419 -5.7511 5.8333 14 6 6.2695 -6.1404 7.0674 15 1 5.6079 -5.4279 7.5375 16 6 6.4067 -7.4065 7.5958 17 7 7.2121 -8.2743 7.0231 18 14 5.4499 -7.8888 9.1259 19 1 3.9942 -7.7678 8.8579 20 1 5.7717 -9.2923 9.4891 21 1 5.8232 -6.9897 10.2472 22 6 7.5861 -3.8693 4.2822 23 6 7.2759 -2.4105 3.9327 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6055 -1.7198 1.2951 32 1 1.7517 -0.1583 2.1369 33 1 3.8533 -1.3939 0.3001 34 1 3.9994 0.1676 1.1420 35 1 3.4259 -1.8268 3.0579 36 1 5.0010 -2.1286 5.6172 37 1 3.8769 -2.6830 4.3498 38 1 5.0489 -4.8363 4.1935 39 1 4.6126 -4.5398 5.8937 40 1 6.9009 -3.6560 6.3136 41 1 6.7685 -6.4113 5.0103 42 1 8.1103 -5.8395 6.0305 43 1 7.3089 -9.1649 7.3950 44 1 7.3778 -4.5024 3.4196 45 1 8.6370 -3.9622 4.5563 46 1 7.8237 -2.1255 3.0345 47 1 7.5689 -1.7641 4.7599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567744856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:01 Heat of formation + Delta-G solvation = -64.112154 kcal Electronic energy + Delta-G solvation = -22523.732430 eV Core-core repulsion = 19319.118204 eV Total energy + Delta-G solvation = -3204.614227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.22713 -37.81924 -36.96446 -34.40756 -33.89335 -32.09835 -30.73291 -29.22015 -27.78471 -27.49381 -24.69945 -23.40186 -22.77543 -21.71404 -20.56937 -19.90262 -19.07051 -17.81192 -16.34592 -16.17178 -15.98566 -15.17562 -14.84314 -14.55578 -14.34699 -13.96356 -13.88406 -13.68349 -13.32212 -13.09154 -12.87002 -12.72283 -12.53453 -12.20960 -12.01082 -11.82299 -11.73118 -11.20436 -11.15888 -10.99994 -10.97783 -10.95098 -10.81114 -10.66982 -10.47677 -10.11713 -9.92536 -9.62695 -9.26174 -9.07620 -8.96676 -8.35905 -8.19956 -6.00300 -4.02529 2.79258 3.30924 3.35359 3.36396 3.37633 3.96818 4.44242 4.46463 4.52235 4.61056 4.98169 5.09794 5.12828 5.29920 5.32651 5.34295 5.35895 5.38908 5.49121 5.51312 5.54837 5.59359 5.69175 5.71671 5.75982 5.79265 5.82993 6.01094 6.02812 6.05239 6.12829 6.37481 6.42394 6.51604 6.52846 6.68043 6.97785 7.00882 7.11406 7.13310 7.66666 7.81928 7.99581 8.06800 8.41666 8.73317 9.03879 9.61104 11.10918 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.003041 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.645454 B = 9205.387866 C =10067.625702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.128 4.128 5 C 0.137 3.863 6 N -0.752 5.752 7 C 0.706 3.294 8 O -0.599 6.599 9 N -0.623 5.623 10 C 0.110 3.890 11 C -0.118 4.118 12 C -0.080 4.080 13 C 0.027 3.973 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.130 4.130 23 C 0.130 3.870 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 16.702 -10.557 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.166 4.166 5 C 0.013 3.987 6 N -0.410 5.410 7 C 0.408 3.592 8 O -0.479 6.479 9 N -0.360 5.360 10 C -0.013 4.013 11 C -0.156 4.156 12 C -0.098 4.098 13 C -0.009 4.009 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.168 4.168 23 C 0.007 3.993 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.582 16.758 -11.189 22.760 hybrid contribution -0.865 -0.654 1.282 1.679 sum -11.447 16.105 -9.907 22.103 Atomic orbital electron populations 1.21837 0.94949 1.01848 1.01821 1.21029 0.95835 0.96439 0.97911 1.21932 1.01517 0.95748 1.01753 1.21876 0.94499 1.01370 0.98847 1.21230 0.93164 0.96975 0.87365 1.45313 1.06204 1.64228 1.25245 1.15838 0.82356 0.78530 0.82481 1.90873 1.55734 1.59317 1.41935 1.47349 1.07777 1.63698 1.17176 1.21879 0.91476 0.97281 0.90687 1.21971 0.98822 0.92908 1.01922 1.21172 0.92687 1.00712 0.95249 1.19122 0.96780 0.88850 0.96197 1.21201 1.25644 0.97566 1.11105 0.92677 1.25029 0.95496 0.96771 0.97194 1.69954 1.37339 1.05758 1.40406 0.86705 0.80402 0.77503 0.83646 1.20307 1.21377 1.20306 1.22040 1.00503 0.94577 0.99702 1.21538 0.78949 0.97473 1.01337 0.92643 0.92616 0.92593 0.90830 0.92159 0.92707 0.92641 0.91172 0.91264 0.91832 0.91690 0.76804 0.91568 0.91580 0.92300 0.89828 0.92367 0.96670 0.96566 0.92985 0.92089 0.91150 0.89623 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 37.16 0.34 -0.53 16 2 C -0.09 -0.62 2.92 -90.62 -0.26 -0.89 16 3 C -0.15 -1.01 8.95 37.16 0.33 -0.67 16 4 C -0.13 -0.95 4.80 -26.73 -0.13 -1.08 16 5 C 0.14 1.42 5.43 -4.04 -0.02 1.40 16 6 N -0.75 -9.09 5.47 -65.23 -0.36 -9.45 16 7 C 0.71 11.28 8.30 -86.91 -0.72 10.55 16 8 O -0.60 -11.63 15.77 5.29 0.08 -11.54 16 9 N -0.62 -9.50 2.97 -178.24 -0.53 -10.02 16 10 C 0.11 1.49 6.42 -3.49 -0.02 1.47 16 11 C -0.12 -2.02 5.21 -26.39 -0.14 -2.16 16 12 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 13 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 14 C -0.52 -13.95 8.39 -34.44 -0.29 -14.23 16 15 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 18 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.13 -2.24 5.36 -26.61 -0.14 -2.38 16 23 C 0.13 2.02 6.44 -3.71 -0.02 1.99 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 35 H 0.40 3.95 5.96 -40.82 -0.24 3.70 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.72 5.64 -51.93 -0.29 0.43 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.09 1.39 6.99 -51.93 -0.36 1.03 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -31.80 364.16 -9.72 -41.52 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.63 Total: -0.06 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.49 Total: -6.22 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.15 Total: -45.33 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.80 -9.72 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567744856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.591 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds