Wall clock time and date at job start Tue Mar 31 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46884 * 2 1 4 4 C 1.52998 * 109.47460 * 120.00124 * 2 1 3 5 5 C 1.53000 * 109.47080 * 175.00302 * 4 2 1 6 6 N 1.46502 * 109.46534 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99582 * 180.02562 * 6 5 4 8 8 O 1.21586 * 120.00164 * 355.00931 * 7 6 5 9 9 N 1.34779 * 119.99935 * 175.01517 * 7 6 5 10 10 C 1.46924 * 120.63167 * 4.93900 * 9 7 6 11 11 C 1.53616 * 108.54541 * 126.37085 * 10 9 7 12 12 C 1.53042 * 109.24359 * 54.85470 * 11 10 9 13 13 C 1.52998 * 109.46369 * 178.49198 * 12 11 10 14 14 C 1.50702 * 109.46929 * 295.06926 * 13 12 11 15 15 H 1.07999 * 119.99991 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99977 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99898 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46719 * 60.00711 * 18 16 14 20 20 H 1.48500 * 109.46951 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47383 * 300.00653 * 18 16 14 22 22 C 1.53041 * 109.53743 * 298.51442 * 12 11 10 23 23 C 1.46933 * 120.62793 * 185.21977 * 9 7 6 24 24 H 1.08995 * 109.47385 * 299.99805 * 1 2 3 25 25 H 1.09000 * 109.47368 * 60.00000 * 1 2 3 26 26 H 1.09000 * 109.46734 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47301 * 240.00672 * 2 1 3 28 28 H 1.09000 * 109.47158 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47119 * 300.00153 * 3 2 1 30 30 H 1.08995 * 109.46951 * 59.99929 * 3 2 1 31 31 H 1.09003 * 109.47108 * 54.99912 * 4 2 1 32 32 H 1.08999 * 109.46766 * 295.00045 * 4 2 1 33 33 H 1.08999 * 109.47112 * 299.99531 * 5 4 2 34 34 H 1.08994 * 109.47056 * 60.00301 * 5 4 2 35 35 H 0.96998 * 120.00461 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.58342 * 246.20741 * 10 9 7 37 37 H 1.09000 * 109.58624 * 6.62742 * 10 9 7 38 38 H 1.08997 * 109.63418 * 294.86350 * 11 10 9 39 39 H 1.09000 * 109.46166 * 174.74241 * 11 10 9 40 40 H 1.08995 * 109.44720 * 58.52278 * 12 11 10 41 41 H 1.08998 * 109.46923 * 55.06533 * 13 12 11 42 42 H 1.08998 * 109.47567 * 175.07071 * 13 12 11 43 43 H 0.96997 * 120.00126 * 179.97438 * 17 16 14 44 44 H 1.09006 * 109.49766 * 301.40955 * 22 12 11 45 45 H 1.09004 * 109.52237 * 181.33049 * 22 12 11 46 46 H 1.08993 * 109.58692 * 353.36934 * 23 9 7 47 47 H 1.08997 * 109.58523 * 113.65632 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8309 1.1879 6 7 4.0532 -1.5221 2.3837 7 6 5.3741 -1.7337 2.5476 8 8 6.1523 -1.4330 1.6631 9 7 5.8324 -2.2786 3.6920 10 6 4.8983 -2.7463 4.7251 11 6 5.2351 -4.2065 5.0633 12 6 6.7102 -4.3052 5.4591 13 6 7.0419 -5.7511 5.8333 14 6 6.2695 -6.1404 7.0674 15 1 5.6079 -5.4279 7.5375 16 6 6.4067 -7.4065 7.5958 17 7 7.2121 -8.2743 7.0231 18 14 5.4499 -7.8888 9.1259 19 1 3.9942 -7.7678 8.8579 20 1 5.7717 -9.2923 9.4891 21 1 5.8232 -6.9897 10.2472 22 6 7.5861 -3.8693 4.2822 23 6 7.2759 -2.4105 3.9327 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6055 -1.7198 1.2951 32 1 1.7517 -0.1583 2.1369 33 1 3.8533 -1.3939 0.3001 34 1 3.9994 0.1676 1.1420 35 1 3.4259 -1.8268 3.0579 36 1 5.0010 -2.1286 5.6172 37 1 3.8769 -2.6830 4.3498 38 1 5.0489 -4.8363 4.1935 39 1 4.6126 -4.5398 5.8937 40 1 6.9009 -3.6560 6.3136 41 1 6.7685 -6.4113 5.0103 42 1 8.1103 -5.8395 6.0305 43 1 7.3089 -9.1649 7.3950 44 1 7.3778 -4.5024 3.4196 45 1 8.6370 -3.9622 4.5563 46 1 7.8237 -2.1255 3.0345 47 1 7.5689 -1.7641 4.7599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567744856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:00 Heat of formation + Delta-G solvation = -82.393633 kcal Electronic energy + Delta-G solvation = -22524.525175 eV Core-core repulsion = 19319.118204 eV Total energy + Delta-G solvation = -3205.406971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44567 -39.00331 -37.86409 -35.71281 -35.31463 -33.89714 -32.01368 -30.29448 -29.32408 -27.98912 -26.32536 -24.44893 -24.09634 -23.18127 -21.53818 -21.05737 -20.25004 -19.02082 -18.38337 -17.36265 -16.90051 -16.52878 -16.05009 -15.83565 -15.37530 -15.19220 -14.93976 -14.72830 -14.56428 -14.46376 -14.22635 -13.83795 -13.69350 -13.31286 -13.02693 -12.94717 -12.75985 -12.65329 -12.48000 -12.41855 -12.31061 -12.16079 -11.76981 -11.75219 -11.56844 -11.49528 -11.37971 -11.22341 -10.96108 -10.83282 -10.50170 -10.19713 -9.42380 -8.14645 -6.24521 1.42872 1.45396 1.52805 1.68226 2.11914 2.44223 2.92951 3.18990 3.82299 3.92990 3.96548 4.02358 4.06797 4.09783 4.21907 4.34435 4.42247 4.49682 4.53767 4.64469 4.69588 4.80088 4.82292 4.84908 4.90196 4.97618 4.98948 5.02434 5.08938 5.13364 5.15835 5.32075 5.33904 5.34623 5.40192 5.47540 5.51422 5.55038 5.56713 5.61803 5.83033 5.91062 6.00370 6.30396 6.92447 6.96181 7.44293 7.54427 8.97241 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.003041 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.645454 B = 9205.387866 C =10067.625702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.117 4.117 5 C 0.137 3.863 6 N -0.737 5.737 7 C 0.700 3.300 8 O -0.639 6.639 9 N -0.626 5.626 10 C 0.118 3.882 11 C -0.113 4.113 12 C -0.072 4.072 13 C 0.032 3.968 14 C -0.526 4.526 15 H 0.069 0.931 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.962 3.038 19 H -0.264 1.264 20 H -0.291 1.291 21 H -0.266 1.266 22 C -0.122 4.122 23 C 0.137 3.863 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.408 0.592 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.066 0.934 41 H -0.018 1.018 42 H -0.015 1.015 43 H 0.260 0.740 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 18.400 -9.465 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.155 4.155 5 C 0.013 3.987 6 N -0.396 5.396 7 C 0.402 3.598 8 O -0.521 6.521 9 N -0.362 5.362 10 C -0.004 4.004 11 C -0.151 4.151 12 C -0.091 4.091 13 C -0.005 4.005 14 C -0.564 4.564 15 H 0.087 0.913 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.786 3.214 19 H -0.188 1.188 20 H -0.217 1.217 21 H -0.191 1.191 22 C -0.161 4.161 23 C 0.014 3.986 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.247 0.753 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.000 1.000 42 H 0.004 0.996 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.020 18.475 -10.084 24.749 hybrid contribution -0.083 -1.206 0.889 1.500 sum -13.102 17.269 -9.195 23.547 Atomic orbital electron populations 1.21812 0.94017 1.02093 1.02286 1.21031 0.96534 0.96284 0.97361 1.21924 1.00819 0.95859 1.02291 1.21818 0.91971 1.02039 0.99698 1.21328 0.95180 0.96114 0.86104 1.45252 1.05009 1.63390 1.25903 1.16057 0.83238 0.78461 0.82074 1.90847 1.57054 1.60987 1.43213 1.47392 1.07824 1.63566 1.17414 1.21913 0.92641 0.94593 0.91259 1.21858 0.96818 0.95516 1.00936 1.21023 0.94860 0.96883 0.96288 1.19023 0.94656 0.92076 0.94749 1.21648 1.25461 0.97871 1.11413 0.91257 1.26001 0.96573 0.96948 1.00710 1.70115 1.39305 1.06187 1.42378 0.85551 0.79356 0.76927 0.79524 1.18847 1.21654 1.19131 1.21925 1.00283 0.95788 0.98057 1.21431 0.79516 0.95981 1.01717 0.92184 0.92193 0.92459 0.91335 0.93221 0.92144 0.92178 0.90589 0.90094 0.93367 0.92212 0.75320 0.89454 0.88396 0.93966 0.90387 0.91598 0.99971 0.99638 0.93096 0.93974 0.90984 0.90396 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.19 71.98 0.66 -0.73 16 2 C -0.09 -1.08 2.92 -10.79 -0.03 -1.11 16 3 C -0.15 -1.78 8.95 71.98 0.64 -1.13 16 4 C -0.12 -1.47 4.80 30.59 0.15 -1.32 16 5 C 0.14 2.65 5.43 86.38 0.47 3.12 16 6 N -0.74 -16.29 5.47 -478.54 -2.62 -18.91 16 7 C 0.70 21.38 8.30 179.05 1.49 22.87 16 8 O -0.64 -24.61 15.77 -3.99 -0.06 -24.67 16 9 N -0.63 -17.89 2.97 -836.08 -2.48 -20.37 16 10 C 0.12 2.85 6.42 86.51 0.56 3.41 16 11 C -0.11 -3.73 5.21 30.82 0.16 -3.57 16 12 C -0.07 -2.76 2.10 -10.77 -0.02 -2.79 16 13 C 0.03 1.65 4.45 29.85 0.13 1.78 16 14 C -0.53 -28.46 8.39 25.60 0.21 -28.24 16 15 H 0.07 3.48 7.05 -2.91 -0.02 3.46 16 16 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 17 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 18 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 22 C -0.12 -4.23 5.36 30.67 0.16 -4.07 16 23 C 0.14 4.08 6.44 86.36 0.56 4.64 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.68 6.57 -2.39 -0.02 0.67 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.24 6.57 -2.39 -0.02 1.23 16 35 H 0.41 6.80 5.96 -92.71 -0.55 6.25 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.10 1.75 5.64 -2.39 -0.01 1.74 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 2.67 6.91 -2.39 -0.02 2.66 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 42 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 43 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 44 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 46 H 0.08 2.49 6.99 -2.39 -0.02 2.48 16 47 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -70.21 364.16 3.12 -67.09 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.37 Total: 15.57 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 5.60 Total: -7.00 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -4.81 Total: -96.16 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.06 Total: -24.67 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.21 3.12 -67.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567744856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.301 kcal (2) G-P(sol) polarization free energy of solvation -70.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds