Wall clock time and date at job start Tue Mar 31 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53010 * 109.46869 * 2 1 4 4 C 1.52997 * 109.47354 * 120.00152 * 2 1 3 5 5 C 1.53001 * 109.46997 * 73.04694 * 4 2 1 6 6 H 1.09002 * 109.46773 * 174.32056 * 5 4 2 7 7 N 1.46902 * 109.47241 * 54.31734 * 5 4 2 8 8 C 1.50699 * 109.46985 * 294.31754 * 5 4 2 9 9 O 1.21281 * 120.00139 * 107.60206 * 8 5 4 10 10 N 1.34783 * 119.99917 * 287.60099 * 8 5 4 11 11 C 1.46936 * 120.62785 * 359.72019 * 10 8 5 12 12 C 1.52757 * 109.00447 * 233.58161 * 11 10 8 13 13 C 1.53039 * 109.38999 * 305.59150 * 12 11 10 14 14 C 1.52996 * 109.45250 * 181.25440 * 13 12 11 15 15 C 1.50704 * 109.47099 * 64.93607 * 14 13 12 16 16 H 1.07997 * 120.00032 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99888 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99872 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47082 * 59.99947 * 19 17 15 21 21 H 1.48497 * 109.47295 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47174 * 300.00158 * 19 17 15 23 23 C 1.53041 * 109.53504 * 61.23842 * 13 12 11 24 24 C 1.46923 * 120.63375 * 180.02562 * 10 8 5 25 25 H 1.08998 * 109.46599 * 280.41042 * 1 2 3 26 26 H 1.08994 * 109.47455 * 40.40879 * 1 2 3 27 27 H 1.08995 * 109.47054 * 160.41254 * 1 2 3 28 28 H 1.09002 * 109.47218 * 240.00450 * 2 1 3 29 29 H 1.09003 * 109.46682 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47240 * 300.00356 * 3 2 1 31 31 H 1.09002 * 109.46833 * 60.00215 * 3 2 1 32 32 H 1.08993 * 109.47107 * 313.04222 * 4 2 1 33 33 H 1.09004 * 109.47122 * 193.04429 * 4 2 1 34 34 H 1.00901 * 110.99683 * 295.61168 * 7 5 4 35 35 H 1.00898 * 110.99661 * 59.56940 * 7 5 4 36 36 H 1.08999 * 109.58529 * 353.42237 * 11 10 8 37 37 H 1.08999 * 109.58245 * 113.84942 * 11 10 8 38 38 H 1.08999 * 109.56035 * 185.55128 * 12 11 10 39 39 H 1.09006 * 109.36130 * 65.50535 * 12 11 10 40 40 H 1.08999 * 109.45532 * 301.22667 * 13 12 11 41 41 H 1.08995 * 109.47033 * 184.93543 * 14 13 12 42 42 H 1.09000 * 109.47065 * 304.94153 * 14 13 12 43 43 H 0.96999 * 119.99849 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.49454 * 178.69031 * 23 13 12 45 45 H 1.08995 * 109.52302 * 58.60888 * 23 13 12 46 46 H 1.09000 * 109.58671 * 246.15875 * 24 10 8 47 47 H 1.09003 * 109.58245 * 6.43654 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.8135 -2.2267 1.0970 6 1 2.2666 -2.7492 1.9396 7 7 2.4276 -2.6904 -0.1543 8 6 0.3340 -2.5114 1.0662 9 8 -0.1996 -2.8358 0.0265 10 7 -0.3963 -2.4056 2.1941 11 6 0.2371 -2.0196 3.4625 12 6 -0.1019 -3.0630 4.5255 13 6 -1.6209 -3.2308 4.6065 14 6 -1.9634 -4.2526 5.6925 15 6 -1.5479 -3.7146 7.0375 16 1 -1.0862 -2.7411 7.1104 17 6 -1.7582 -4.4648 8.1750 18 7 -2.3219 -5.6497 8.0863 19 14 -1.2438 -3.7976 9.8422 20 1 -1.9654 -2.5279 10.1113 21 1 -1.5773 -4.7889 10.8964 22 1 0.2195 -3.5453 9.8443 23 6 -2.1542 -3.7213 3.2584 24 6 -1.8395 -2.6805 2.1800 25 1 -0.3632 0.1857 1.0108 26 1 -0.3634 0.7824 -0.6661 27 1 -0.3633 -0.9682 -0.3445 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.5000 -0.3590 2.1238 33 1 3.1051 -0.5248 1.3728 34 1 1.9760 -2.2738 -0.9547 35 1 3.4193 -2.5042 -0.1611 36 1 1.3180 -1.9713 3.3313 37 1 -0.1389 -1.0461 3.7771 38 1 0.2801 -2.7360 5.4926 39 1 0.3555 -4.0150 4.2562 40 1 -2.0795 -2.2728 4.8515 41 1 -3.0375 -4.4378 5.6913 42 1 -1.4337 -5.1845 5.4946 43 1 -2.4695 -6.1777 8.8865 44 1 -3.2330 -3.8629 3.3237 45 1 -1.6780 -4.6673 3.0008 46 1 -2.3884 -1.7620 2.3877 47 1 -2.1285 -3.0657 1.2021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568091154.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:12 Heat of formation + Delta-G solvation = -59.387317 kcal Electronic energy + Delta-G solvation = -23755.640833 eV Core-core repulsion = 20551.231491 eV Total energy + Delta-G solvation = -3204.409342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.61246 -37.87863 -36.62082 -34.02322 -33.60446 -32.15063 -30.86088 -28.53563 -27.80279 -27.29943 -25.17229 -23.73197 -22.81817 -21.63106 -20.38028 -19.63556 -18.62825 -17.27288 -16.31776 -16.11915 -15.86248 -15.01546 -14.82212 -14.57425 -14.52634 -13.90617 -13.78954 -13.54902 -13.46563 -12.90787 -12.83133 -12.64633 -12.55019 -12.44085 -12.14292 -11.90059 -11.80451 -11.20375 -11.04589 -11.02048 -10.80502 -10.77379 -10.73450 -10.64199 -10.43688 -10.13662 -9.73948 -9.50308 -9.25729 -8.99011 -8.84949 -8.37104 -8.31181 -6.01198 -4.03565 2.73725 3.11185 3.30429 3.36028 3.37098 4.35425 4.43521 4.46129 4.53154 4.57199 4.73915 5.06737 5.16785 5.24886 5.31353 5.33707 5.41876 5.44440 5.45702 5.47601 5.54808 5.63407 5.69506 5.71977 5.74802 5.79222 5.93961 5.98062 6.06532 6.11853 6.29108 6.37596 6.39084 6.50848 6.66993 6.88964 6.95487 6.98264 7.09623 7.28069 7.59429 7.65333 7.80353 7.98435 8.33367 8.40371 9.02797 9.60256 11.10027 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.003827 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.158431 B = 7314.580386 C = 7706.095006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.151 4.151 5 C 0.072 3.928 6 H 0.105 0.895 7 N -0.827 5.827 8 C 0.529 3.471 9 O -0.541 6.541 10 N -0.602 5.602 11 C 0.101 3.899 12 C -0.121 4.121 13 C -0.080 4.080 14 C 0.028 3.972 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.129 4.129 24 C 0.113 3.887 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.350 0.650 35 H 0.344 0.656 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.261 0.739 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.870 11.814 -14.404 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.191 4.191 5 C -0.043 4.043 6 H 0.123 0.877 7 N -0.359 5.359 8 C 0.318 3.682 9 O -0.419 6.419 10 N -0.335 5.335 11 C -0.021 4.021 12 C -0.159 4.159 13 C -0.098 4.098 14 C -0.009 4.009 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.168 4.168 24 C -0.009 4.009 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.166 0.834 35 H 0.157 0.843 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.274 10.755 -14.630 19.954 hybrid contribution 0.529 1.323 1.120 1.812 sum 8.803 12.078 -13.510 20.147 Atomic orbital electron populations 1.22404 0.94658 1.04380 1.01906 1.21134 0.96737 0.96082 0.97693 1.21857 1.00542 0.95982 1.01871 1.22565 1.02107 0.94939 0.99458 1.21419 0.93120 0.94469 0.95296 0.87743 1.58603 1.07343 1.66648 1.03352 1.20194 0.88474 0.76272 0.83298 1.90596 1.72686 1.47873 1.30737 1.48125 1.09231 1.67583 1.08586 1.21926 0.97309 0.98979 0.83893 1.21841 0.98102 0.97984 0.97928 1.21176 0.93740 1.00597 0.94313 1.19119 0.96732 0.93421 0.91664 1.21194 1.39750 1.02881 0.91755 0.92678 1.25021 0.95353 0.94938 0.99108 1.69953 1.43392 1.11068 1.29023 0.86710 0.79009 0.78662 0.83911 1.20316 1.21358 1.20282 1.22014 1.01284 0.98129 0.95330 1.21638 0.79603 0.98931 1.00734 0.92806 0.93123 0.89440 0.91406 0.92918 0.92712 0.92606 0.90314 0.90897 0.83356 0.84270 0.90471 0.91556 0.89680 0.92226 0.92405 0.96612 0.96622 0.92969 0.91188 0.92044 0.91974 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 8.04 37.16 0.30 -1.64 16 2 C -0.10 -0.88 2.71 -90.61 -0.25 -1.13 16 3 C -0.15 -1.12 9.07 37.16 0.34 -0.78 16 4 C -0.15 -1.33 4.42 -26.73 -0.12 -1.45 16 5 C 0.07 0.79 2.68 -68.86 -0.18 0.61 16 6 H 0.10 1.13 6.99 -51.93 -0.36 0.76 16 7 N -0.83 -8.73 8.77 -5.65 -0.05 -8.78 16 8 C 0.53 7.49 4.71 -10.98 -0.05 7.44 16 9 O -0.54 -9.17 13.34 5.56 0.07 -9.10 16 10 N -0.60 -8.41 2.98 -173.05 -0.52 -8.92 16 11 C 0.10 1.32 5.14 -3.93 -0.02 1.30 16 12 C -0.12 -2.01 5.17 -26.84 -0.14 -2.15 16 13 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 14 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 15 C -0.52 -13.87 8.39 -34.44 -0.29 -14.16 16 16 H 0.06 1.41 7.06 -52.49 -0.37 1.04 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 19 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.13 -2.17 5.36 -26.63 -0.14 -2.31 16 24 C 0.11 1.66 6.43 -3.74 -0.02 1.64 16 25 H 0.05 0.62 7.79 -51.93 -0.40 0.21 16 26 H 0.05 0.52 7.98 -51.93 -0.41 0.10 16 27 H 0.09 1.18 4.61 -51.93 -0.24 0.94 16 28 H 0.07 0.61 6.03 -51.93 -0.31 0.30 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.41 8.13 -51.93 -0.42 -0.02 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.72 6.04 -51.93 -0.31 0.41 16 33 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 34 H 0.35 3.79 6.46 -39.29 -0.25 3.54 16 35 H 0.34 2.70 9.03 -39.29 -0.35 2.34 16 36 H 0.08 0.83 4.99 -51.93 -0.26 0.57 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.30 7.00 -51.93 -0.36 0.94 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -30.49 350.18 -8.70 -39.19 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -8.21 Total: 4.32 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: -0.99 Total: -12.30 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.17 Total: -43.44 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.49 -8.70 -39.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568091154.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.198 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds