Wall clock time and date at job start Tue Mar 31 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52990 * 109.47151 * 2 1 4 4 C 1.53005 * 109.46617 * 240.00315 * 2 1 3 5 5 C 1.52997 * 109.47150 * 120.00301 * 2 1 3 6 6 N 1.46906 * 109.47222 * 79.26184 * 5 2 1 7 7 C 1.46903 * 110.99639 * 313.09345 * 6 5 2 8 8 C 1.50699 * 109.47174 * 301.07850 * 7 6 5 9 9 H 1.08004 * 120.00218 * 2.40264 * 8 7 6 10 10 C 1.37881 * 120.00062 * 182.39690 * 8 7 6 11 11 N 1.31511 * 119.99506 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00040 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47138 * 60.00147 * 12 10 8 14 14 H 1.48503 * 109.47026 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47281 * 299.99896 * 12 10 8 16 16 C 1.46896 * 111.00162 * 77.04596 * 6 5 2 17 17 C 1.52998 * 109.47050 * 90.90338 * 16 6 5 18 18 C 1.53000 * 109.47500 * 180.02562 * 17 16 6 19 19 H 1.09003 * 110.43035 * 56.08517 * 18 17 16 20 20 C 1.54618 * 110.49053 * 178.77628 * 18 17 16 21 21 C 1.54482 * 101.76566 * 143.47693 * 20 18 17 22 22 N 1.46760 * 105.47402 * 334.58327 * 21 20 18 23 23 C 1.34417 * 111.29702 * 17.01646 * 22 21 20 24 24 O 1.21287 * 124.93589 * 179.55996 * 23 22 21 25 25 H 1.09001 * 109.46877 * 274.37059 * 1 2 3 26 26 H 1.08999 * 109.47268 * 34.37310 * 1 2 3 27 27 H 1.09004 * 109.46971 * 154.37152 * 1 2 3 28 28 H 1.08997 * 109.47164 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47722 * 300.00270 * 3 2 1 30 30 H 1.08997 * 109.47483 * 60.00073 * 3 2 1 31 31 H 1.09004 * 109.46912 * 294.93661 * 4 2 1 32 32 H 1.08989 * 109.47598 * 54.94279 * 4 2 1 33 33 H 1.09007 * 109.46756 * 174.94346 * 4 2 1 34 34 H 1.08998 * 109.46992 * 319.26429 * 5 2 1 35 35 H 1.09002 * 109.46990 * 199.25957 * 5 2 1 36 36 H 1.08994 * 109.47340 * 61.08526 * 7 6 5 37 37 H 1.09005 * 109.46613 * 181.08483 * 7 6 5 38 38 H 0.97002 * 119.99787 * 179.97438 * 11 10 8 39 39 H 1.08990 * 109.47531 * 210.90868 * 16 6 5 40 40 H 1.09008 * 109.47061 * 330.90887 * 16 6 5 41 41 H 1.09003 * 109.47625 * 300.00369 * 17 16 6 42 42 H 1.09008 * 109.46741 * 60.00352 * 17 16 6 43 43 H 1.09001 * 110.96912 * 261.59485 * 20 18 17 44 44 H 1.09001 * 110.97146 * 25.35777 * 20 18 17 45 45 H 1.09006 * 110.24253 * 215.58129 * 21 20 18 46 46 H 1.09004 * 110.32015 * 93.62670 * 21 20 18 47 47 H 0.96993 * 124.34625 * 197.04228 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0401 -0.7213 1.2492 6 7 1.9600 -2.1736 1.0430 7 6 0.6543 -2.5554 0.4886 8 6 -0.4384 -2.1182 1.4299 9 1 -0.1907 -1.5736 2.3291 10 6 -1.7544 -2.4133 1.1431 11 7 -2.0559 -3.0768 0.0484 12 14 -3.1088 -1.8707 2.3095 13 1 -3.0918 -0.3910 2.4336 14 1 -4.4245 -2.3083 1.7778 15 1 -2.8868 -2.4821 3.6444 16 6 3.0547 -2.6446 0.1841 17 6 4.2504 -3.0402 1.0528 18 6 5.3908 -3.5301 0.1583 19 1 5.6516 -2.7689 -0.5770 20 6 6.6239 -3.9077 1.0113 21 6 7.1731 -5.1324 0.2465 22 7 6.0200 -5.7015 -0.4609 23 6 5.0065 -4.8213 -0.5301 24 8 3.9394 -5.0315 -1.0668 25 1 -0.3633 0.0783 1.0247 26 1 -0.3634 0.8482 -0.5802 27 1 -0.3633 -0.9266 -0.4445 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.7525 -1.7717 -1.2052 32 1 1.6046 -0.2624 -2.1369 33 1 3.1263 -0.6435 -1.2958 34 1 1.4270 -0.4416 2.1059 35 1 3.0758 -0.4373 1.4353 36 1 0.5152 -2.0729 -0.4788 37 1 0.6149 -3.6376 0.3640 38 1 -2.9816 -3.2847 -0.1532 39 1 2.7204 -3.5090 -0.3893 40 1 3.3495 -1.8476 -0.4986 41 1 4.5848 -2.1756 1.6263 42 1 3.9556 -3.8372 1.7355 43 1 7.3524 -3.0970 1.0242 44 1 6.3286 -4.1808 2.0244 45 1 7.5837 -5.8607 0.9458 46 1 7.9373 -4.8221 -0.4662 47 1 5.9927 -6.5978 -0.8306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568899661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:14 Heat of formation + Delta-G solvation = 0.157695 kcal Electronic energy + Delta-G solvation = -24185.901686 eV Core-core repulsion = 20984.074409 eV Total energy + Delta-G solvation = -3201.827277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40773 -39.09919 -36.27936 -34.25550 -33.01376 -32.00577 -29.36133 -27.80765 -27.43999 -26.04002 -25.67590 -24.20372 -22.02636 -21.96222 -19.92619 -19.56123 -18.13003 -17.28796 -16.65603 -16.17198 -15.07729 -14.93680 -14.55780 -14.17175 -14.02861 -13.86175 -13.64419 -13.45039 -12.99274 -12.86824 -12.55007 -12.28818 -11.90421 -11.71987 -11.45194 -11.24669 -11.19331 -10.98939 -10.81678 -10.68916 -10.64882 -10.60354 -10.43137 -10.17430 -10.06500 -9.71775 -9.52977 -9.18441 -9.15212 -9.07175 -8.88495 -8.25443 -6.75069 -5.89025 -3.82960 2.74664 3.35230 3.39704 3.44492 3.46897 4.33330 4.41310 4.52807 4.64440 4.97862 5.16878 5.26727 5.37900 5.44745 5.55001 5.56735 5.59212 5.65456 5.79180 5.89029 5.95905 6.07051 6.13153 6.22500 6.27346 6.31227 6.40367 6.44049 6.60798 6.73120 6.79763 6.82312 6.84307 6.92951 6.98899 7.09232 7.13107 7.31554 7.56168 7.57540 7.92949 8.00968 8.30222 8.36672 8.46510 8.76840 9.16756 9.73016 11.21582 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.004955 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.918591 B = 5649.432425 C = 6391.843040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.159 4.159 5 C 0.081 3.919 6 N -0.535 5.535 7 C 0.169 3.831 8 C -0.488 4.488 9 H 0.059 0.941 10 C 0.054 3.946 11 N -0.898 5.898 12 Si 0.886 3.114 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.279 1.279 16 C 0.011 3.989 17 C -0.091 4.091 18 C -0.122 4.122 19 H 0.104 0.896 20 C -0.130 4.130 21 C 0.103 3.897 22 N -0.741 5.741 23 C 0.519 3.481 24 O -0.512 6.512 25 H 0.066 0.934 26 H 0.011 0.989 27 H 0.102 0.898 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.027 0.973 37 H 0.025 0.975 38 H 0.259 0.741 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.165 1.059 -0.090 19.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.191 4.191 4 C -0.215 4.215 5 C -0.048 4.048 6 N -0.257 5.257 7 C 0.044 3.956 8 C -0.527 4.527 9 H 0.077 0.923 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.714 3.286 13 H -0.204 1.204 14 H -0.216 1.216 15 H -0.205 1.205 16 C -0.117 4.117 17 C -0.130 4.130 18 C -0.144 4.144 19 H 0.122 0.878 20 C -0.168 4.168 21 C -0.022 4.022 22 N -0.398 5.398 23 C 0.305 3.695 24 O -0.387 6.387 25 H 0.085 0.915 26 H 0.030 0.970 27 H 0.121 0.879 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 18.461 0.751 0.039 18.476 hybrid contribution -0.767 0.248 -0.272 0.851 sum 17.694 0.999 -0.233 17.723 Atomic orbital electron populations 1.22586 0.92338 1.01980 1.02808 1.21134 0.98113 0.94144 0.96347 1.21854 0.99482 0.96913 1.00852 1.22697 0.98552 1.03069 0.97209 1.22125 0.98102 0.88284 0.96303 1.62188 1.04386 1.11117 1.48020 1.20483 0.83592 0.96354 0.95139 1.21040 0.90412 1.34388 1.06898 0.92269 1.24861 0.98430 0.95971 0.95350 1.69940 1.18490 1.40496 1.24865 0.86745 0.81468 0.78936 0.81407 1.20358 1.21556 1.20454 1.23028 0.92234 1.01485 0.94922 1.21433 0.93368 1.00882 0.97312 1.22011 0.97150 0.96184 0.99081 0.87816 1.22698 0.97144 0.97391 0.99574 1.22016 0.88491 0.96149 0.95571 1.46261 1.16196 1.17343 1.60015 1.20989 0.83179 0.86442 0.78907 1.90777 1.23183 1.80264 1.44436 0.91497 0.97000 0.87914 0.93902 0.93655 0.93168 0.89515 0.94153 0.93590 0.91068 0.93801 0.95574 0.95718 0.93084 0.89608 0.92332 0.91682 0.91635 0.89383 0.89700 0.90620 0.91420 0.75545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 6.97 37.16 0.26 -2.83 16 2 C -0.10 -1.80 0.77 -154.51 -0.12 -1.92 16 3 C -0.13 -2.09 8.25 37.15 0.31 -1.78 16 4 C -0.16 -2.96 6.40 37.16 0.24 -2.72 16 5 C 0.08 1.57 4.68 -3.82 -0.02 1.55 16 6 N -0.53 -11.58 4.62 -236.07 -1.09 -12.67 16 7 C 0.17 4.36 3.65 -4.98 -0.02 4.34 16 8 C -0.49 -13.29 5.14 -34.44 -0.18 -13.46 16 9 H 0.06 1.61 6.38 -52.48 -0.33 1.28 16 10 C 0.05 1.52 4.96 -17.82 -0.09 1.43 16 11 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 12 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 C 0.01 0.21 3.32 -3.83 -0.01 0.20 16 17 C -0.09 -1.37 4.92 -26.73 -0.13 -1.50 16 18 C -0.12 -1.45 2.98 -90.64 -0.27 -1.72 16 19 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 20 C -0.13 -1.03 6.70 -25.10 -0.17 -1.20 16 21 C 0.10 0.71 7.78 -3.12 -0.02 0.68 16 22 N -0.74 -7.64 6.24 -59.20 -0.37 -8.01 16 23 C 0.52 7.52 7.83 -10.86 -0.09 7.44 16 24 O -0.51 -10.04 15.45 5.55 0.09 -9.95 16 25 H 0.07 1.55 5.94 -51.93 -0.31 1.25 16 26 H 0.01 0.23 7.88 -51.93 -0.41 -0.18 16 27 H 0.10 2.61 4.14 -51.93 -0.21 2.40 16 28 H 0.04 0.60 8.13 -51.93 -0.42 0.18 16 29 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.85 3.42 -51.93 -0.18 1.67 16 32 H 0.04 0.72 8.14 -51.94 -0.42 0.30 16 33 H 0.05 0.76 6.48 -51.92 -0.34 0.42 16 34 H 0.07 1.49 6.37 -51.93 -0.33 1.16 16 35 H 0.04 0.75 7.47 -51.93 -0.39 0.36 16 36 H 0.03 0.71 2.78 -51.93 -0.14 0.57 16 37 H 0.02 0.73 8.00 -51.93 -0.42 0.32 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.09 1.89 5.16 -51.93 -0.27 1.62 16 40 H 0.06 1.04 3.71 -51.92 -0.19 0.85 16 41 H 0.06 0.89 7.80 -51.93 -0.41 0.49 16 42 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.41 3.63 8.96 -40.82 -0.37 3.27 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -31.81 338.75 -8.50 -40.31 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -7.64 Total: 5.78 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -0.31 Total: -11.49 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.72 Total: -46.51 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.81 -8.50 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568899661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.473 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds