Wall clock time and date at job start Tue Mar 31 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46922 * 2 1 4 4 C 1.53001 * 109.47285 * 239.99712 * 2 1 3 5 5 C 1.52998 * 109.46962 * 119.99706 * 2 1 3 6 6 N 1.46906 * 109.46859 * 75.30209 * 5 2 1 7 7 C 1.46892 * 110.99918 * 318.21229 * 6 5 2 8 8 C 1.50704 * 109.47595 * 300.84514 * 7 6 5 9 9 H 1.08002 * 119.99543 * 359.88400 * 8 7 6 10 10 C 1.37874 * 120.00055 * 180.15536 * 8 7 6 11 11 N 1.31507 * 120.00280 * 359.73042 * 10 8 7 12 12 Si 1.86805 * 119.99749 * 179.72339 * 10 8 7 13 13 H 1.48498 * 109.47088 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46796 * 120.00062 * 12 10 8 15 15 H 1.48500 * 109.47258 * 240.00404 * 12 10 8 16 16 C 1.46896 * 111.00011 * 82.16932 * 6 5 2 17 17 C 1.53004 * 109.47288 * 77.47768 * 16 6 5 18 18 C 1.52994 * 109.47264 * 179.97438 * 17 16 6 19 19 H 1.08998 * 110.43993 * 307.54081 * 18 17 16 20 20 C 1.54635 * 110.48693 * 184.99641 * 18 17 16 21 21 C 1.54477 * 101.76546 * 216.52717 * 20 18 17 22 22 N 1.46763 * 105.47742 * 25.41228 * 21 20 18 23 23 C 1.34423 * 111.30202 * 342.98910 * 22 21 20 24 24 O 1.21277 * 124.94734 * 180.43767 * 23 22 21 25 25 H 1.08992 * 109.47374 * 279.44084 * 1 2 3 26 26 H 1.09004 * 109.47238 * 39.44621 * 1 2 3 27 27 H 1.09002 * 109.47191 * 159.43931 * 1 2 3 28 28 H 1.09000 * 109.46898 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47407 * 299.99669 * 3 2 1 30 30 H 1.08998 * 109.47458 * 60.00053 * 3 2 1 31 31 H 1.08997 * 109.47235 * 305.31464 * 4 2 1 32 32 H 1.09004 * 109.46632 * 65.31269 * 4 2 1 33 33 H 1.08993 * 109.47310 * 185.31210 * 4 2 1 34 34 H 1.09000 * 109.47439 * 315.29904 * 5 2 1 35 35 H 1.09001 * 109.47271 * 195.30179 * 5 2 1 36 36 H 1.09007 * 109.47298 * 180.84297 * 7 6 5 37 37 H 1.09002 * 109.47039 * 60.84788 * 7 6 5 38 38 H 0.97000 * 120.00366 * 180.02562 * 11 10 8 39 39 H 1.08998 * 109.47055 * 197.47230 * 16 6 5 40 40 H 1.08998 * 109.47131 * 317.47667 * 16 6 5 41 41 H 1.09002 * 109.47127 * 299.99799 * 17 16 6 42 42 H 1.09001 * 109.46998 * 59.99129 * 17 16 6 43 43 H 1.09000 * 110.96685 * 334.64366 * 20 18 17 44 44 H 1.09000 * 110.96797 * 98.37001 * 20 18 17 45 45 H 1.08995 * 110.24849 * 144.41554 * 21 20 18 46 46 H 1.09006 * 110.24287 * 266.41660 * 21 20 18 47 47 H 0.96996 * 124.35160 * 162.97652 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.8718 -2.1708 1.0807 7 6 0.5753 -2.4822 0.4643 8 6 -0.5348 -1.9476 1.3320 9 1 -0.3007 -1.4301 2.2506 10 6 -1.8495 -2.1242 0.9560 11 7 -2.1347 -2.7544 -0.1624 12 14 -3.2258 -1.4682 2.0355 13 1 -2.6444 -0.8031 3.2291 14 1 -4.0330 -0.4871 1.2667 15 1 -4.0939 -2.5925 2.4685 16 6 2.9770 -2.7416 0.2992 17 6 4.2140 -2.8779 1.1893 18 6 5.3648 -3.4730 0.3755 19 1 5.0479 -4.3931 -0.1154 20 6 6.5889 -3.7375 1.2826 21 6 7.7613 -3.3897 0.3388 22 7 7.2104 -2.4425 -0.6376 23 6 5.8665 -2.4723 -0.6422 24 8 5.1591 -1.7959 -1.3583 25 1 -0.3634 0.1686 1.0137 26 1 -0.3634 0.7936 -0.6529 27 1 -0.3634 -0.9622 -0.3609 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6011 -1.7178 -1.2980 32 1 1.7564 -0.1554 -2.1366 33 1 3.1258 -0.8044 -1.2029 34 1 1.4724 -0.3882 2.1182 35 1 3.0956 -0.4924 1.3954 36 1 0.4705 -3.5627 0.3648 37 1 0.5211 -2.0196 -0.5212 38 1 -3.0596 -2.8783 -0.4272 39 1 2.6883 -3.7240 -0.0744 40 1 3.2045 -2.0857 -0.5411 41 1 4.5027 -1.8955 1.5630 42 1 3.9864 -3.5337 2.0297 43 1 6.5796 -3.0799 2.1518 44 1 6.6298 -4.7832 1.5875 45 1 8.5719 -2.9245 0.8996 46 1 8.1179 -4.2874 -0.1664 47 1 7.7470 -1.8686 -1.2064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568899662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:18 Heat of formation + Delta-G solvation = 10.087348 kcal Electronic energy + Delta-G solvation = -24434.857055 eV Core-core repulsion = 21233.460360 eV Total energy + Delta-G solvation = -3201.396695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.47896 -39.07418 -36.34770 -34.30295 -33.05482 -32.06616 -29.37455 -27.93343 -27.27927 -26.00396 -25.47370 -24.12049 -22.06949 -21.99727 -19.93172 -19.61278 -17.99587 -17.36733 -16.69895 -16.21788 -15.16125 -14.81878 -14.65632 -14.26756 -14.00581 -13.83823 -13.68789 -13.27853 -13.04077 -12.75065 -12.56501 -12.28325 -11.93612 -11.75878 -11.35255 -11.19847 -11.13560 -10.99903 -10.84820 -10.67142 -10.59092 -10.45264 -10.39108 -10.13680 -10.02553 -9.65070 -9.52011 -9.24849 -9.19120 -8.92363 -8.70900 -8.18403 -6.67256 -5.92965 -3.81189 2.66473 3.28188 3.36342 3.44634 3.48308 4.29727 4.38043 4.51033 4.61603 4.93759 5.15821 5.22629 5.33547 5.41105 5.60381 5.65692 5.70188 5.72875 5.76856 5.95403 6.00703 6.05749 6.25452 6.34754 6.36435 6.47585 6.51033 6.56774 6.63963 6.72551 6.75882 6.84439 6.96385 7.04986 7.09417 7.13799 7.29081 7.44319 7.52353 7.63727 7.92158 8.17825 8.29985 8.30971 8.42389 8.73294 9.12691 9.69194 11.17484 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025719 B = 0.004750 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.412216 B = 5893.459356 C = 6383.031606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.166 4.166 5 C 0.083 3.917 6 N -0.535 5.535 7 C 0.159 3.841 8 C -0.480 4.480 9 H 0.062 0.938 10 C 0.049 3.951 11 N -0.900 5.900 12 Si 0.886 3.114 13 H -0.274 1.274 14 H -0.286 1.286 15 H -0.286 1.286 16 C 0.007 3.993 17 C -0.091 4.091 18 C -0.123 4.123 19 H 0.107 0.893 20 C -0.130 4.130 21 C 0.102 3.898 22 N -0.740 5.740 23 C 0.520 3.480 24 O -0.516 6.516 25 H 0.059 0.941 26 H 0.003 0.997 27 H 0.128 0.872 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.021 0.979 37 H 0.037 0.963 38 H 0.259 0.741 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.233 -0.636 1.070 19.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.191 4.191 4 C -0.222 4.222 5 C -0.045 4.045 6 N -0.257 5.257 7 C 0.035 3.965 8 C -0.519 4.519 9 H 0.080 0.920 10 C -0.151 4.151 11 N -0.541 5.541 12 Si 0.714 3.286 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.121 4.121 17 C -0.130 4.130 18 C -0.145 4.145 19 H 0.125 0.875 20 C -0.168 4.168 21 C -0.023 4.023 22 N -0.397 5.397 23 C 0.306 3.694 24 O -0.390 6.390 25 H 0.078 0.922 26 H 0.022 0.978 27 H 0.146 0.854 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 18.615 -0.642 1.143 18.661 hybrid contribution -0.501 0.922 -0.416 1.129 sum 18.114 0.281 0.728 18.131 Atomic orbital electron populations 1.23095 0.92141 1.04132 1.01366 1.21101 0.98224 0.93983 0.96163 1.21840 0.99484 0.97141 1.00624 1.22707 1.01186 1.01652 0.96658 1.22029 0.97715 0.88385 0.96398 1.62277 1.03235 1.10275 1.49951 1.20719 0.84088 0.96556 0.95185 1.21053 0.90043 1.34140 1.06688 0.92021 1.24825 0.98400 0.96493 0.95347 1.69934 1.18694 1.42875 1.22554 0.86611 0.82581 0.78616 0.80776 1.19817 1.21232 1.21243 1.22943 0.91262 1.00842 0.97025 1.21419 0.93039 1.00425 0.98095 1.22029 0.96791 0.99400 0.96293 0.87479 1.22704 0.92835 1.03366 0.97915 1.22033 0.96918 0.92869 0.90459 1.46268 1.07833 1.43186 1.42433 1.21018 0.82168 0.82894 0.83331 1.90725 1.59689 1.45122 1.43513 0.92209 0.97793 0.85398 0.94021 0.93718 0.93403 0.90349 0.94619 0.91086 0.91541 0.93926 0.96046 0.94617 0.93126 0.92649 0.89268 0.92313 0.90824 0.89800 0.89203 0.90604 0.91318 0.75592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 6.54 37.16 0.24 -3.28 16 2 C -0.09 -1.91 0.77 -154.51 -0.12 -2.03 16 3 C -0.13 -2.37 8.32 37.16 0.31 -2.06 16 4 C -0.17 -3.43 6.56 37.16 0.24 -3.18 16 5 C 0.08 1.71 4.57 -3.82 -0.02 1.69 16 6 N -0.53 -11.59 4.68 -236.07 -1.10 -12.70 16 7 C 0.16 4.03 3.76 -4.98 -0.02 4.01 16 8 C -0.48 -12.92 4.94 -34.44 -0.17 -13.09 16 9 H 0.06 1.69 6.46 -52.49 -0.34 1.35 16 10 C 0.05 1.35 4.47 -17.82 -0.08 1.27 16 11 N -0.90 -26.05 13.03 55.43 0.72 -25.33 16 12 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 13 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 16 C 0.01 0.13 3.98 -3.82 -0.02 0.12 16 17 C -0.09 -1.34 4.72 -26.73 -0.13 -1.47 16 18 C -0.12 -1.42 2.94 -90.63 -0.27 -1.69 16 19 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 20 C -0.13 -0.99 6.70 -25.10 -0.17 -1.16 16 21 C 0.10 0.65 7.78 -3.12 -0.02 0.63 16 22 N -0.74 -6.94 6.24 -59.20 -0.37 -7.31 16 23 C 0.52 6.93 7.82 -10.85 -0.08 6.85 16 24 O -0.52 -9.05 14.45 5.56 0.08 -8.97 16 25 H 0.06 1.44 6.03 -51.93 -0.31 1.13 16 26 H 0.00 0.07 7.96 -51.93 -0.41 -0.34 16 27 H 0.13 3.36 2.89 -51.93 -0.15 3.21 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.77 3.95 -51.93 -0.21 1.56 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.44 4.83 -51.93 -0.25 1.19 16 34 H 0.07 1.44 6.78 -51.93 -0.35 1.09 16 35 H 0.04 0.81 6.50 -51.93 -0.34 0.47 16 36 H 0.02 0.60 7.99 -51.93 -0.41 0.18 16 37 H 0.04 0.96 2.54 -51.93 -0.13 0.83 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.05 1.07 7.81 -51.93 -0.41 0.66 16 40 H 0.09 1.74 1.77 -51.93 -0.09 1.65 16 41 H 0.06 0.89 6.86 -51.93 -0.36 0.54 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.08 0.64 7.91 -51.93 -0.41 0.23 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.41 3.22 8.96 -40.82 -0.37 2.86 16 LS Contribution 333.96 15.07 5.03 5.03 Total: -1.00 -30.88 333.96 -8.43 -39.31 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.48 Total: 6.72 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -0.29 Total: -13.39 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.75 Total: -45.34 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.08 Total: -8.97 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.88 -8.43 -39.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568899662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.402 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds