Wall clock time and date at job start Tue Mar 31 2020 06:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47264 * 2 1 4 4 C 1.53003 * 109.47362 * 120.00402 * 2 1 3 5 5 N 1.46901 * 109.47163 * 239.99896 * 2 1 3 6 6 C 1.46196 * 111.00079 * 184.71461 * 5 2 1 7 7 C 1.51280 * 109.10340 * 144.77190 * 6 5 2 8 8 C 1.53803 * 109.62739 * 92.40764 * 7 6 5 9 9 N 1.47616 * 111.30432 * 319.96190 * 8 7 6 10 10 C 1.34776 * 118.74532 * 138.34099 * 9 8 7 11 11 O 1.21280 * 120.00006 * 179.97438 * 10 9 8 12 12 C 1.50700 * 119.99902 * 359.97438 * 10 9 8 13 13 C 1.53001 * 109.46857 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99773 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00516 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99551 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47191 * 89.99335 * 18 16 14 20 20 H 1.48497 * 109.47199 * 210.00212 * 18 16 14 21 21 H 1.48501 * 109.46800 * 329.99663 * 18 16 14 22 22 C 1.44879 * 122.50336 * 318.31901 * 9 8 7 23 23 C 1.41447 * 110.99925 * 53.68518 * 5 2 1 24 24 H 1.08994 * 109.46946 * 52.20570 * 1 2 3 25 25 H 1.08998 * 109.46651 * 292.20346 * 1 2 3 26 26 H 1.08997 * 109.46956 * 172.20730 * 1 2 3 27 27 H 1.08996 * 109.46957 * 60.00244 * 3 2 1 28 28 H 1.09003 * 109.47112 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47417 * 300.00051 * 3 2 1 30 30 H 1.08993 * 109.47153 * 70.99978 * 4 2 1 31 31 H 1.08994 * 109.47628 * 191.00605 * 4 2 1 32 32 H 1.09007 * 109.46821 * 311.00457 * 4 2 1 33 33 H 1.09004 * 109.53236 * 264.65848 * 6 5 2 34 34 H 1.08995 * 109.53607 * 24.88566 * 6 5 2 35 35 H 1.08999 * 109.44140 * 332.36610 * 7 6 5 36 36 H 1.08992 * 109.42280 * 212.44464 * 7 6 5 37 37 H 1.09000 * 109.10965 * 199.49287 * 8 7 6 38 38 H 1.09000 * 109.11136 * 80.43152 * 8 7 6 39 39 H 1.08995 * 109.47049 * 299.99810 * 12 10 9 40 40 H 1.09000 * 109.47248 * 60.00373 * 12 10 9 41 41 H 1.09000 * 109.47338 * 300.00387 * 13 12 10 42 42 H 1.09000 * 109.46974 * 60.00098 * 13 12 10 43 43 H 0.97000 * 120.00139 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.43932 * 329.65842 * 22 9 8 45 45 H 1.09006 * 109.39716 * 209.76785 * 22 9 8 46 46 H 1.09006 * 109.38178 * 311.84033 * 23 5 2 47 47 H 1.08995 * 109.38934 * 71.62699 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 2.0197 -0.6925 -1.1994 6 6 3.4768 -0.8099 -1.1785 7 6 3.8765 -2.1263 -1.8077 8 6 4.1419 -1.9219 -3.3088 9 7 3.1543 -1.0028 -3.9078 10 6 3.5813 -0.0781 -4.7904 11 8 2.7894 0.6883 -5.2967 12 6 5.0430 0.0036 -5.1481 13 6 5.2577 1.1293 -6.1618 14 6 6.7192 1.2107 -6.5201 15 1 7.4245 0.5280 -6.0695 16 6 7.1563 2.1572 -7.4223 17 7 6.2977 2.9896 -7.9698 18 14 8.9678 2.2576 -7.8669 19 1 9.2405 1.3802 -9.0335 20 1 9.3164 3.6598 -8.2098 21 1 9.7866 1.8126 -6.7108 22 6 1.7433 -1.0572 -3.5834 23 6 1.4513 -0.1403 -2.3711 24 1 -0.3633 0.6298 -0.8120 25 1 -0.3632 0.3884 0.9515 26 1 -0.3633 -1.0182 -0.1393 27 1 1.6768 1.9562 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.8458 -1.7898 1.1566 31 1 3.1122 -0.5546 1.3528 32 1 1.5255 -0.3334 2.1283 33 1 3.9168 0.0123 -1.7428 34 1 3.8304 -0.7764 -0.1480 35 1 3.0721 -2.8501 -1.6767 36 1 4.7811 -2.4981 -1.3266 37 1 4.0861 -2.8854 -3.8155 38 1 5.1414 -1.5075 -3.4413 39 1 5.6260 0.2077 -4.2501 40 1 5.3642 -0.9431 -5.5826 41 1 4.6746 0.9258 -7.0599 42 1 4.9366 2.0759 -5.7270 43 1 6.6051 3.6553 -8.6048 44 1 1.4669 -2.0825 -3.3376 45 1 1.1613 -0.7204 -4.4413 46 1 0.3733 -0.0458 -2.2403 47 1 1.8815 0.8446 -2.5524 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569777491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:01 Heat of formation + Delta-G solvation = -34.337964 kcal Electronic energy + Delta-G solvation = -23764.177774 eV Core-core repulsion = 20560.854653 eV Total energy + Delta-G solvation = -3203.323121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47244 -38.84032 -35.96040 -33.56805 -32.75290 -32.62149 -30.87555 -28.30500 -27.59751 -27.39285 -25.52701 -25.28785 -22.62357 -21.28611 -20.87123 -19.01475 -18.16242 -17.04145 -16.51351 -15.97169 -15.66457 -15.35784 -15.16207 -14.43995 -14.30939 -14.10396 -13.83922 -13.55399 -13.35921 -12.78867 -12.69558 -12.25964 -12.23385 -12.16594 -12.06712 -11.88097 -11.70407 -11.59900 -11.30952 -11.12060 -11.00289 -10.94677 -10.88469 -10.73042 -10.55266 -10.48566 -9.93283 -9.57772 -9.13723 -8.93448 -8.36857 -8.29788 -8.13554 -5.94770 -3.99138 3.26359 3.33825 3.38250 3.40734 3.43493 3.76940 4.47847 4.61087 4.72041 4.74659 4.98074 5.03414 5.07073 5.13754 5.23218 5.39267 5.40060 5.42111 5.50429 5.53627 5.57145 5.58975 5.63800 5.68267 5.75166 5.76877 5.86396 5.88447 5.90975 6.02194 6.05221 6.10305 6.17016 6.22029 6.25997 6.27106 6.87105 7.00188 7.16612 7.39075 7.75727 7.79859 7.88339 8.08921 8.40491 8.81383 9.09526 9.64277 11.16210 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025784 B = 0.003692 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.703547 B = 7582.568336 C = 7608.903573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.108 3.892 3 C -0.180 4.180 4 C -0.139 4.139 5 N -0.548 5.548 6 C 0.065 3.935 7 C -0.128 4.128 8 C 0.108 3.892 9 N -0.620 5.620 10 C 0.506 3.494 11 O -0.534 6.534 12 C -0.129 4.129 13 C 0.038 3.962 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.121 3.879 23 C 0.052 3.948 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.022 0.978 43 H 0.261 0.739 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 -10.914 18.927 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.019 3.981 3 C -0.238 4.238 4 C -0.197 4.197 5 N -0.273 5.273 6 C -0.062 4.062 7 C -0.167 4.167 8 C -0.015 4.015 9 N -0.356 5.356 10 C 0.296 3.704 11 O -0.410 6.410 12 C -0.169 4.169 13 C 0.000 4.000 14 C -0.565 4.565 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.003 4.003 23 C -0.078 4.078 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.913 -10.787 18.511 23.607 hybrid contribution 1.331 0.899 -0.324 1.638 sum -8.582 -9.888 18.187 22.410 Atomic orbital electron populations 1.21953 0.93952 1.02437 1.01573 1.21008 0.95130 0.91553 0.90445 1.22497 1.01527 0.97592 1.02227 1.21946 1.00687 1.01093 0.95931 1.58670 1.09907 1.56511 1.02189 1.21602 0.86687 0.97290 1.00636 1.21853 1.01945 0.98345 0.94579 1.21969 0.92747 0.93479 0.93309 1.48008 1.07476 1.35522 1.44554 1.21609 0.92552 0.78890 0.77375 1.90651 1.57096 1.40700 1.52521 1.21880 0.89539 1.03442 1.02004 1.18892 0.96251 0.91875 0.92968 1.21222 0.93250 1.16858 1.25127 0.92662 1.25026 0.97539 0.95650 0.96159 1.70003 1.33939 1.19551 1.29360 0.86598 0.85421 0.77230 0.78746 1.20658 1.21234 1.19894 1.21412 0.82476 0.99718 0.96731 1.21791 0.99725 0.96644 0.89627 0.92434 0.92377 0.91686 0.92301 0.92556 0.92331 0.91666 0.92572 0.92411 0.93843 0.90661 0.90446 0.90603 0.92109 0.89578 0.90520 0.90389 0.95887 0.96000 0.92976 0.90679 0.89815 0.89837 0.95001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 7.75 37.16 0.29 -0.91 16 2 C 0.11 1.01 0.70 -131.60 -0.09 0.92 16 3 C -0.18 -1.85 7.99 37.16 0.30 -1.56 16 4 C -0.14 -1.10 7.98 37.16 0.30 -0.80 16 5 N -0.55 -5.91 3.68 -223.77 -0.82 -6.74 16 6 C 0.06 0.71 3.91 -5.07 -0.02 0.69 16 7 C -0.13 -1.24 5.78 -27.18 -0.16 -1.39 16 8 C 0.11 1.27 5.99 -3.01 -0.02 1.25 16 9 N -0.62 -9.42 2.18 -172.44 -0.38 -9.80 16 10 C 0.51 10.14 7.63 -10.99 -0.08 10.06 16 11 O -0.53 -12.91 15.41 5.56 0.09 -12.82 16 12 C -0.13 -2.70 3.97 -27.88 -0.11 -2.81 16 13 C 0.04 1.03 4.26 -27.88 -0.12 0.92 16 14 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 15 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C 0.12 1.64 5.51 -3.97 -0.02 1.62 16 23 C 0.05 0.66 4.64 -5.74 -0.03 0.63 16 24 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 25 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.62 7.30 -51.93 -0.38 0.24 16 29 H 0.06 0.70 6.82 -51.93 -0.35 0.34 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.44 6.31 -51.93 -0.33 0.11 16 32 H 0.06 0.40 8.04 -51.93 -0.42 -0.02 16 33 H 0.04 0.60 7.32 -51.93 -0.38 0.22 16 34 H 0.08 0.72 5.27 -51.93 -0.27 0.45 16 35 H 0.08 0.74 7.98 -51.93 -0.41 0.33 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.05 5.87 -51.93 -0.30 0.74 16 39 H 0.08 1.48 7.41 -51.93 -0.38 1.10 16 40 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.66 8.10 -51.93 -0.42 0.23 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 45 H 0.08 1.28 7.28 -51.93 -0.38 0.91 16 46 H 0.08 0.94 5.59 -51.93 -0.29 0.65 16 47 H 0.03 0.51 6.94 -51.93 -0.36 0.14 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -33.28 351.96 -8.63 -41.91 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.36 Total: -2.47 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.18 Total: -5.20 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.46 Total: -43.53 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.28 -8.63 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569777491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.571 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds