Wall clock time and date at job start Tue Mar 31 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47044 * 2 1 4 4 C 1.53004 * 109.47193 * 175.00075 * 3 2 1 5 5 C 1.53001 * 109.47249 * 185.00148 * 4 3 2 6 6 N 1.46498 * 109.47036 * 295.00270 * 3 2 1 7 7 C 1.34782 * 119.99675 * 155.00134 * 6 3 2 8 8 O 1.21585 * 120.00182 * 4.29903 * 7 6 3 9 9 N 1.34776 * 119.99666 * 184.30063 * 7 6 3 10 10 C 1.46929 * 120.62739 * 174.75546 * 9 7 6 11 11 C 1.53188 * 108.89507 * 126.34103 * 10 9 7 12 12 C 1.53356 * 109.14869 * 54.57463 * 11 10 9 13 13 C 1.52999 * 109.41869 * 178.67609 * 12 11 10 14 14 C 1.50701 * 109.47181 * 295.12863 * 13 12 11 15 15 H 1.08006 * 119.99657 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00367 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99714 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00264 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47167 * 59.99616 * 18 16 14 20 20 H 1.48502 * 109.47169 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46734 * 299.99549 * 18 16 14 22 22 C 1.53039 * 109.60761 * 298.71201 * 12 11 10 23 23 C 1.46924 * 120.63537 * 354.77419 * 9 7 6 24 24 H 1.08993 * 109.46894 * 299.99236 * 1 2 3 25 25 H 1.08998 * 109.47213 * 60.00128 * 1 2 3 26 26 H 1.08999 * 109.46592 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47220 * 240.00641 * 2 1 3 28 28 H 1.08999 * 109.47761 * 120.00403 * 2 1 3 29 29 H 1.09004 * 109.46848 * 55.00346 * 3 2 1 30 30 H 1.09001 * 109.46791 * 305.00611 * 4 3 2 31 31 H 1.08998 * 109.46918 * 65.00334 * 4 3 2 32 32 H 1.09001 * 109.46846 * 59.99751 * 5 4 3 33 33 H 1.09001 * 109.47122 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.46727 * 300.00229 * 5 4 3 35 35 H 0.96993 * 120.00686 * 334.99671 * 6 3 2 36 36 H 1.09000 * 109.58585 * 246.19803 * 10 9 7 37 37 H 1.08998 * 109.58867 * 6.48225 * 10 9 7 38 38 H 1.08993 * 109.49986 * 174.65262 * 11 10 9 39 39 H 1.09000 * 109.50131 * 294.75510 * 11 10 9 40 40 H 1.09005 * 109.41773 * 58.75275 * 12 11 10 41 41 H 1.09000 * 109.47367 * 55.12490 * 13 12 11 42 42 H 1.08997 * 109.47321 * 175.12888 * 13 12 11 43 43 H 0.97001 * 120.00013 * 180.02562 * 17 16 14 44 44 H 1.08994 * 109.49777 * 301.42437 * 22 12 11 45 45 H 1.08997 * 109.52486 * 181.33880 * 22 12 11 46 46 H 1.09007 * 109.58506 * 353.37657 * 23 9 7 47 47 H 1.08998 * 109.58724 * 113.65647 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0645 2.8851 0.2511 6 7 1.6523 2.0975 -1.2518 7 6 1.5255 3.4385 -1.2995 8 8 1.8081 4.1109 -0.3267 9 7 1.0854 4.0341 -2.4255 10 6 0.8327 5.4811 -2.4573 11 6 1.6123 6.0953 -3.6242 12 6 1.2420 5.3609 -4.9186 13 6 1.9925 5.9911 -6.0935 14 6 1.5219 7.4096 -6.2874 15 1 0.7637 7.8206 -5.6372 16 6 2.0593 8.1827 -7.2947 17 7 2.9829 7.6823 -8.0860 18 14 1.4765 9.9412 -7.5345 19 1 1.7429 10.7236 -6.3008 20 1 2.2048 10.5528 -8.6750 21 1 0.0188 9.9451 -7.8181 22 6 1.6280 3.8848 -4.7999 23 6 0.8488 3.2487 -3.6445 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6053 1.9815 0.8419 30 1 3.8570 0.8800 1.0113 31 1 4.0029 0.9837 -0.7597 32 1 3.6263 3.3458 1.1365 33 1 5.1508 2.8864 0.3402 34 1 3.7722 3.4493 -0.6344 35 1 1.4870 1.5662 -2.0462 36 1 -0.2333 5.6629 -2.5942 37 1 1.1627 5.9304 -1.5207 38 1 1.3583 7.1513 -3.7157 39 1 2.6819 5.9925 -3.4414 40 1 0.1683 5.4431 -5.0874 41 1 3.0623 5.9887 -5.8847 42 1 1.7978 5.4168 -6.9992 43 1 3.3613 8.2263 -8.7944 44 1 2.6975 3.8028 -4.6061 45 1 1.3861 3.3691 -5.7292 46 1 1.1918 2.2253 -3.4921 47 1 -0.2161 3.2463 -3.8767 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570445807.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:05 Heat of formation + Delta-G solvation = -57.351808 kcal Electronic energy + Delta-G solvation = -23375.619982 eV Core-core repulsion = 20171.298906 eV Total energy + Delta-G solvation = -3204.321076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42732 -37.97737 -36.37885 -34.06314 -32.58178 -32.19329 -31.68840 -30.47160 -27.96422 -26.39195 -24.58093 -22.83536 -22.13791 -22.03333 -20.94529 -20.02186 -19.15769 -17.75922 -16.61478 -16.21563 -15.65844 -15.02169 -14.55500 -14.43941 -14.14223 -13.88717 -13.79085 -13.55932 -13.17074 -13.01034 -12.87114 -12.77749 -12.40796 -12.08444 -11.86575 -11.71037 -11.40307 -11.26256 -11.16718 -11.01647 -10.82549 -10.78544 -10.72542 -10.65447 -10.39345 -10.15149 -9.80528 -9.60414 -9.23174 -8.98450 -8.94105 -8.34059 -8.18439 -5.98951 -4.00716 2.81614 3.33776 3.38471 3.38617 3.40727 3.98469 4.46150 4.46740 4.78813 4.81552 5.04921 5.15152 5.27444 5.31043 5.35703 5.37233 5.39661 5.47669 5.61750 5.65538 5.66666 5.69616 5.81948 5.85400 5.88365 5.99455 6.01513 6.04292 6.12915 6.20715 6.35716 6.42028 6.52357 6.57504 6.62722 6.68998 7.00624 7.04161 7.12749 7.19160 7.66857 7.81995 8.00666 8.10439 8.43531 8.78313 9.05524 9.63085 11.12352 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031026 B = 0.003420 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.241540 B = 8184.956305 C = 8341.901586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.162 3.838 4 C -0.134 4.134 5 C -0.143 4.143 6 N -0.743 5.743 7 C 0.706 3.294 8 O -0.590 6.590 9 N -0.623 5.623 10 C 0.127 3.873 11 C -0.118 4.118 12 C -0.080 4.080 13 C 0.028 3.972 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.129 4.129 23 C 0.114 3.886 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 -16.248 14.208 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.057 3.943 4 C -0.173 4.173 5 C -0.200 4.200 6 N -0.402 5.402 7 C 0.408 3.592 8 O -0.469 6.469 9 N -0.361 5.361 10 C 0.004 3.996 11 C -0.156 4.156 12 C -0.098 4.098 13 C -0.009 4.009 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.168 4.168 23 C -0.009 4.009 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.213 -15.703 14.786 21.807 hybrid contribution -0.261 0.684 -0.810 1.092 sum -3.474 -15.019 13.976 20.808 Atomic orbital electron populations 1.21755 0.95331 1.01458 1.02340 1.21834 0.96551 0.95702 1.02860 1.20904 0.94280 0.92237 0.86903 1.21982 0.95395 0.98416 1.01496 1.21802 0.98937 0.95688 1.03583 1.45377 1.75535 1.05597 1.13643 1.15807 0.78067 0.81951 0.83354 1.90892 1.56856 1.63381 1.35729 1.47357 1.69582 1.09224 1.09888 1.21631 0.99299 0.77979 1.00672 1.21953 0.99636 1.00665 0.93339 1.21229 1.00208 0.91764 0.96619 1.19116 0.95235 0.95052 0.91485 1.21211 1.21906 0.97688 1.14647 0.92621 1.25016 0.95131 0.98272 0.96030 1.69953 1.27737 1.36792 1.19117 0.86703 0.78800 0.85113 0.77658 1.20233 1.21389 1.20295 1.22017 0.99932 0.98187 0.96627 1.21659 1.00179 0.93726 0.85353 0.92627 0.92524 0.92724 0.91520 0.90490 0.89614 0.91673 0.92202 0.92370 0.94231 0.91734 0.77087 0.92284 0.89611 0.89870 0.92426 0.92407 0.96683 0.96703 0.93019 0.92067 0.91226 0.91660 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.80 37.16 0.36 -0.72 16 2 C -0.13 -0.93 5.47 -26.73 -0.15 -1.07 16 3 C 0.16 1.60 2.25 -67.93 -0.15 1.45 16 4 C -0.13 -1.35 5.61 -26.73 -0.15 -1.50 16 5 C -0.14 -1.85 8.47 37.16 0.31 -1.54 16 6 N -0.74 -8.31 4.39 -58.67 -0.26 -8.57 16 7 C 0.71 10.52 7.02 -86.91 -0.61 9.91 16 8 O -0.59 -10.55 12.57 5.29 0.07 -10.48 16 9 N -0.62 -9.14 2.97 -178.50 -0.53 -9.67 16 10 C 0.13 2.02 6.43 -3.71 -0.02 2.00 16 11 C -0.12 -2.17 5.21 -26.45 -0.14 -2.31 16 12 C -0.08 -1.53 2.10 -90.42 -0.19 -1.72 16 13 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 14 C -0.52 -14.12 8.39 -34.44 -0.29 -14.41 16 15 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.13 -2.02 5.36 -26.61 -0.14 -2.17 16 23 C 0.11 1.44 6.39 -3.71 -0.02 1.42 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.44 7.75 -51.93 -0.40 0.04 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 1.01 7.64 -51.93 -0.40 0.61 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.81 7.80 -51.93 -0.40 0.41 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 1.02 5.55 -51.93 -0.29 0.73 16 35 H 0.39 3.65 6.09 -40.82 -0.25 3.40 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 38 H 0.08 1.64 6.92 -51.93 -0.36 1.28 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.07 0.65 5.65 -51.93 -0.29 0.35 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -31.05 358.39 -9.62 -40.67 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.60 Total: 0.76 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -1.41 Total: -8.58 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.05 Total: -44.24 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.07 Total: -10.48 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.05 -9.62 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570445807.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.682 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds