Wall clock time and date at job start Tue Mar 31 2020 05:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46971 * 2 1 4 4 C 1.52995 * 109.47032 * 184.99881 * 3 2 1 5 5 C 1.53008 * 109.47017 * 176.04123 * 4 3 2 6 6 N 1.46501 * 109.46650 * 65.00029 * 3 2 1 7 7 C 1.34779 * 120.00121 * 245.03605 * 6 3 2 8 8 O 1.21278 * 120.00516 * 176.87024 * 7 6 3 9 9 C 1.50705 * 119.99779 * 356.86577 * 7 6 3 10 10 H 1.09009 * 109.46921 * 32.91229 * 9 7 6 11 11 N 1.46897 * 109.47127 * 152.90932 * 9 7 6 12 12 C 1.52996 * 109.47252 * 272.91302 * 9 7 6 13 13 C 1.52997 * 109.46991 * 173.88511 * 12 9 7 14 14 C 1.50703 * 109.47321 * 179.97438 * 13 12 9 15 15 H 1.08009 * 119.99620 * 359.97438 * 14 13 12 16 16 C 1.37867 * 120.00261 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00112 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00267 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46993 * 89.99636 * 18 16 14 20 20 H 1.48493 * 109.47152 * 209.99823 * 18 16 14 21 21 H 1.48498 * 109.46718 * 330.00270 * 18 16 14 22 22 C 1.46504 * 120.00086 * 65.04414 * 6 3 2 23 23 C 1.53000 * 117.49577 * 197.07361 * 22 6 3 24 24 C 1.52993 * 117.50106 * 128.45100 * 22 6 3 25 25 H 1.09005 * 109.47540 * 60.00068 * 1 2 3 26 26 H 1.08996 * 109.47204 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47345 * 299.99791 * 1 2 3 28 28 H 1.09002 * 109.47345 * 240.00209 * 2 1 3 29 29 H 1.08998 * 109.47194 * 120.00499 * 2 1 3 30 30 H 1.08996 * 109.47331 * 305.00444 * 3 2 1 31 31 H 1.09002 * 109.47215 * 296.04016 * 4 3 2 32 32 H 1.08997 * 109.47464 * 56.04482 * 4 3 2 33 33 H 1.08992 * 109.46755 * 299.41109 * 5 4 3 34 34 H 1.08998 * 109.46700 * 59.41437 * 5 4 3 35 35 H 1.09004 * 109.46635 * 179.40844 * 5 4 3 36 36 H 1.00902 * 110.99649 * 60.00007 * 11 9 7 37 37 H 1.00895 * 111.00247 * 183.95475 * 11 9 7 38 38 H 1.09006 * 109.46818 * 293.88096 * 12 9 7 39 39 H 1.09001 * 109.47676 * 53.88071 * 12 9 7 40 40 H 1.09006 * 109.47001 * 299.99474 * 13 12 9 41 41 H 1.08999 * 109.47349 * 59.99855 * 13 12 9 42 42 H 0.97001 * 119.99975 * 179.97438 * 17 16 14 43 43 H 1.08997 * 115.54603 * 342.77444 * 22 6 3 44 44 H 1.09006 * 117.50080 * 359.97438 * 23 22 6 45 45 H 1.09007 * 117.49800 * 145.01413 * 23 22 6 46 46 H 1.09001 * 117.50053 * 214.97493 * 24 22 6 47 47 H 1.09001 * 117.50395 * 0.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5647 1.4444 -0.1257 5 6 4.0665 2.8864 -0.2250 6 7 1.6523 2.0974 1.2519 7 6 0.7900 3.1331 1.2317 8 8 0.4251 3.6387 2.2719 9 6 0.2794 3.6630 -0.0834 10 1 0.1959 2.8435 -0.7975 11 7 -1.0407 4.2760 0.1150 12 6 1.2532 4.7124 -0.6231 13 6 0.8169 5.1393 -2.0261 14 6 1.7756 6.1734 -2.5574 15 1 2.6123 6.4945 -1.9545 16 6 1.5848 6.7097 -3.8131 17 7 2.4213 7.6127 -4.2767 18 14 0.1382 6.1540 -4.8562 19 1 -1.0343 7.0220 -4.5790 20 1 0.4979 6.2520 -6.2936 21 1 -0.1988 4.7462 -4.5250 22 6 2.2021 1.6267 2.5256 23 6 1.4845 2.0566 3.8067 24 6 2.8404 2.6676 3.4474 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6053 1.9816 -0.8417 31 1 4.0022 0.9671 0.7512 32 1 3.8562 0.8959 -1.0214 33 1 3.6373 3.3604 -1.1076 34 1 3.7661 3.4378 0.6660 35 1 5.1537 2.8881 -0.3040 36 1 -0.9898 5.0389 0.7734 37 1 -1.4332 4.5815 -0.7629 38 1 1.2545 5.5801 0.0367 39 1 2.2564 4.2885 -0.6678 40 1 0.8156 4.2716 -2.6858 41 1 -0.1863 5.5633 -1.9814 42 1 2.2872 7.9897 -5.1603 43 1 2.6460 0.6313 2.5068 44 1 0.6037 2.6901 3.7018 45 1 1.4561 1.3440 4.6311 46 1 3.7041 2.3571 4.0354 47 1 2.8510 3.7029 3.1064 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577740471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:50 Heat of formation + Delta-G solvation = -14.318701 kcal Electronic energy + Delta-G solvation = -24387.495107 eV Core-core repulsion = 21185.040087 eV Total energy + Delta-G solvation = -3202.455021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68716 -37.22582 -36.59913 -34.98038 -32.80407 -32.14433 -31.78588 -30.32490 -27.17880 -26.23697 -24.27590 -22.33474 -22.15843 -22.03581 -21.33330 -20.22145 -18.48555 -17.56496 -16.75422 -16.16204 -15.48058 -15.12024 -14.48507 -14.42840 -14.18784 -14.12144 -13.86273 -13.76878 -13.33142 -13.14481 -12.85480 -12.75731 -12.65255 -12.31438 -11.95483 -11.62837 -11.54415 -11.38750 -11.30821 -11.07592 -10.96147 -10.84543 -10.60546 -10.57243 -10.27941 -10.14579 -10.03202 -9.85532 -9.31605 -8.97730 -8.62392 -8.36751 -8.22769 -6.12223 -4.11639 2.79389 2.93283 3.23978 3.32392 3.33218 4.01273 4.36832 4.46826 4.60466 4.86642 4.92528 4.95485 5.03007 5.16561 5.18407 5.20838 5.22036 5.37261 5.42529 5.44002 5.55085 5.57508 5.64951 5.78895 5.82623 5.86823 5.88652 6.00457 6.02451 6.09912 6.17652 6.22814 6.24454 6.34156 6.44930 6.51404 6.69139 6.88232 7.11198 7.21081 7.32549 7.56349 7.66191 7.77001 8.43037 8.44888 8.91993 9.49227 11.00986 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018627 B = 0.005174 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.813047 B = 5410.786306 C = 5452.494273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.133 4.133 3 C 0.130 3.870 4 C -0.129 4.129 5 C -0.159 4.159 6 N -0.574 5.574 7 C 0.533 3.467 8 O -0.531 6.531 9 C 0.068 3.932 10 H 0.095 0.905 11 N -0.831 5.831 12 C -0.141 4.141 13 C -0.009 4.009 14 C -0.522 4.522 15 H 0.071 0.929 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.879 3.121 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 C 0.076 3.924 23 C -0.198 4.198 24 C -0.189 4.189 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.348 0.652 37 H 0.349 0.651 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.016 0.984 41 H 0.010 0.990 42 H 0.264 0.736 43 H 0.122 0.878 44 H 0.146 0.854 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.378 -16.226 9.831 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.027 3.973 4 C -0.167 4.167 5 C -0.216 4.216 6 N -0.305 5.305 7 C 0.322 3.678 8 O -0.408 6.408 9 C -0.047 4.047 10 H 0.113 0.887 11 N -0.363 5.363 12 C -0.181 4.181 13 C -0.046 4.046 14 C -0.560 4.560 15 H 0.089 0.911 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.028 4.028 23 C -0.235 4.235 24 C -0.228 4.228 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.161 0.839 37 H 0.164 0.836 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.035 0.965 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.139 0.861 44 H 0.163 0.837 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.770 -16.559 10.481 19.612 hybrid contribution -0.041 0.641 -1.111 1.283 sum -0.811 -15.918 9.370 18.489 Atomic orbital electron populations 1.21757 0.95262 1.01492 1.02481 1.21920 0.96777 0.96030 1.02445 1.21502 0.95607 0.93665 0.86552 1.21862 0.94140 0.98529 1.02184 1.21919 1.00839 0.95828 1.03012 1.47301 1.44849 1.32563 1.05808 1.20761 0.77177 0.78415 0.91417 1.90408 1.58232 1.58548 1.33647 1.21641 0.91036 0.98702 0.93313 0.88706 1.58776 1.21758 1.38955 1.16813 1.22422 0.99161 0.97119 0.99355 1.19556 0.96731 0.96817 0.91506 1.21048 1.11823 1.21699 1.01382 0.91060 1.25025 0.96118 0.94530 0.97651 1.69914 1.37041 1.28496 1.18460 0.86800 0.83152 0.79782 0.79673 1.20233 1.21328 1.18995 1.21431 1.02963 0.97134 0.81293 1.24066 0.99483 1.04003 0.95982 1.23208 0.96614 0.99398 1.03598 0.92515 0.92852 0.92359 0.90757 0.91718 0.87963 0.91775 0.90813 0.91031 0.92494 0.92780 0.83861 0.83606 0.92152 0.90683 0.96535 0.97180 0.92651 0.86079 0.83668 0.90031 0.89075 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.80 37.16 0.36 -1.21 16 2 C -0.13 -1.25 5.42 -26.73 -0.14 -1.39 16 3 C 0.13 1.47 1.87 -67.93 -0.13 1.34 16 4 C -0.13 -1.35 5.29 -26.73 -0.14 -1.50 16 5 C -0.16 -2.07 8.61 37.16 0.32 -1.75 16 6 N -0.57 -7.38 1.58 -158.59 -0.25 -7.63 16 7 C 0.53 8.43 6.56 -10.98 -0.07 8.35 16 8 O -0.53 -9.57 12.18 5.56 0.07 -9.50 16 9 C 0.07 1.09 2.37 -68.87 -0.16 0.93 16 10 H 0.10 1.44 6.13 -51.92 -0.32 1.12 16 11 N -0.83 -13.29 9.01 -5.65 -0.05 -13.34 16 12 C -0.14 -2.65 4.66 -26.73 -0.12 -2.78 16 13 C -0.01 -0.19 3.83 -27.88 -0.11 -0.30 16 14 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 16 15 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 18 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 22 C 0.08 0.90 5.30 -67.93 -0.36 0.54 16 23 C -0.20 -2.53 9.64 -26.73 -0.26 -2.78 16 24 C -0.19 -2.35 9.90 -26.74 -0.26 -2.61 16 25 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.56 7.06 -51.93 -0.37 0.20 16 30 H 0.10 1.29 5.25 -51.93 -0.27 1.02 16 31 H 0.06 0.61 7.20 -51.93 -0.37 0.24 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.08 6.38 -51.93 -0.33 0.75 16 34 H 0.06 0.81 7.55 -51.93 -0.39 0.42 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.35 5.70 8.55 -39.29 -0.34 5.36 16 37 H 0.35 5.41 7.59 -39.29 -0.30 5.12 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.38 4.55 -51.93 -0.24 1.14 16 40 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.22 6.33 -51.93 -0.33 -0.11 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.12 1.17 6.95 -51.93 -0.36 0.81 16 44 H 0.15 2.30 4.97 -53.32 -0.27 2.03 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 1.41 7.81 -51.93 -0.41 1.00 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -30.11 355.97 -8.30 -38.41 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -8.03 Total: 12.75 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.51 Total: -15.92 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.47 Total: -47.36 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.07 Total: -9.50 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.11 -8.30 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577740471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.093 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds