Wall clock time and date at job start Tue Mar 31 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46685 * 2 1 4 4 C 1.53003 * 109.47085 * 240.00298 * 2 1 3 5 5 C 1.50702 * 109.46948 * 59.99616 * 4 2 1 6 6 H 1.07999 * 120.00282 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99751 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00126 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00013 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47175 * 90.00202 * 9 7 5 11 11 H 1.48500 * 109.47437 * 210.00281 * 9 7 5 12 12 H 1.48507 * 109.47264 * 330.00045 * 9 7 5 13 13 C 1.52992 * 109.47142 * 119.99954 * 2 1 3 14 14 N 1.46496 * 109.47319 * 299.99947 * 13 2 1 15 15 C 1.34784 * 120.00279 * 179.97438 * 14 13 2 16 16 O 1.21591 * 119.99526 * 0.02562 * 15 14 13 17 17 N 1.34768 * 120.00428 * 180.02562 * 15 14 13 18 18 C 1.46497 * 120.00280 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47191 * 59.99837 * 18 17 15 20 20 C 1.52999 * 109.46907 * 300.00001 * 18 17 15 21 21 C 1.53003 * 109.47329 * 180.02562 * 18 17 15 22 22 C 1.53001 * 117.51964 * 116.28255 * 21 18 17 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 18 24 24 H 1.09001 * 109.47071 * 299.99423 * 1 2 3 25 25 H 1.08998 * 109.47636 * 59.99842 * 1 2 3 26 26 H 1.09001 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46749 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47212 * 300.00417 * 3 2 1 29 29 H 1.09003 * 109.47321 * 60.00180 * 3 2 1 30 30 H 1.08995 * 109.46530 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46525 * 299.99766 * 4 2 1 32 32 H 0.96998 * 120.00283 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46885 * 179.97438 * 13 2 1 34 34 H 1.08997 * 109.47455 * 60.00206 * 13 2 1 35 35 H 0.97003 * 120.00180 * 0.02562 * 14 13 2 36 36 H 0.97003 * 120.00030 * 0.02562 * 17 15 14 37 37 H 1.09004 * 109.47051 * 180.02562 * 19 18 17 38 38 H 1.08991 * 109.47188 * 300.00218 * 19 18 17 39 39 H 1.09001 * 109.46725 * 60.00331 * 19 18 17 40 40 H 1.08998 * 109.47344 * 299.99941 * 20 18 17 41 41 H 1.09003 * 109.47562 * 59.99865 * 20 18 17 42 42 H 1.09004 * 109.47159 * 180.02562 * 20 18 17 43 43 H 1.09002 * 115.54973 * 330.58039 * 21 18 17 44 44 H 1.09001 * 117.49733 * 214.97413 * 22 21 18 45 45 H 1.08995 * 117.49577 * 359.97438 * 22 21 18 46 46 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 47 47 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 1.4322 0.1382 -4.8058 9 14 2.9442 -2.0008 -3.9034 10 1 2.0857 -3.2117 -3.9483 11 1 3.7357 -1.9085 -5.1565 12 1 3.8651 -2.0896 -2.7418 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0306 2.4453 15 6 1.8769 -0.4914 3.6695 16 8 2.5759 -1.4800 3.7810 17 7 1.4273 0.1436 4.7699 18 6 1.7812 -0.3569 6.1005 19 6 3.3026 -0.3442 6.2621 20 6 1.2632 -1.7875 6.2616 21 6 1.1470 0.5378 7.1673 22 6 0.1032 -0.0940 8.0905 23 6 1.4936 0.2485 8.6293 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 3.1300 -0.7208 -1.2494 31 1 1.6767 -1.7489 -1.2492 32 1 1.6665 -0.1931 -5.6868 33 1 3.1300 -0.7216 1.2489 34 1 1.6767 -1.7489 1.2492 35 1 0.9937 0.7578 2.3564 36 1 0.8693 0.9320 4.6810 37 1 3.5659 -0.7171 7.2520 38 1 3.7540 -0.9819 5.5022 39 1 3.6716 0.6750 6.1473 40 1 0.1793 -1.7966 6.1465 41 1 1.7146 -2.4253 5.5016 42 1 1.5261 -2.1598 7.2518 43 1 1.0013 1.5795 6.8813 44 1 -0.7293 0.5320 8.4118 45 1 -0.1322 -1.1472 7.9376 46 1 2.1733 -0.5795 8.8309 47 1 1.5760 1.0999 9.3049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581745370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:04 Heat of formation + Delta-G solvation = -21.237508 kcal Electronic energy + Delta-G solvation = -23015.671368 eV Core-core repulsion = 19812.916325 eV Total energy + Delta-G solvation = -3202.755043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45231 -38.66116 -37.16560 -34.40774 -33.64406 -32.16052 -30.61058 -27.76215 -27.50956 -26.53442 -26.10473 -24.20874 -22.52473 -22.39699 -20.53876 -19.37146 -18.65631 -17.71143 -16.94929 -16.62020 -15.40853 -15.32138 -14.88415 -14.46317 -14.13055 -13.98396 -13.77372 -13.41950 -13.36313 -12.89761 -12.68160 -12.48737 -12.25315 -12.20623 -12.08170 -11.72834 -11.30014 -11.18581 -11.10326 -11.02510 -10.98474 -10.76517 -10.59719 -10.45615 -10.43014 -9.94460 -9.80318 -9.71443 -9.46062 -9.10294 -8.97574 -8.57487 -8.52069 -6.03064 -4.00198 2.78958 3.32947 3.37531 3.40882 3.45382 3.51084 4.29045 4.34731 4.47096 4.59539 4.66903 4.83694 4.99682 5.20582 5.29881 5.30287 5.41069 5.52861 5.55648 5.57241 5.57753 5.66929 5.77894 5.79047 5.80466 5.88707 6.14493 6.15008 6.20800 6.25551 6.31162 6.36221 6.54793 6.61788 6.63818 6.78967 6.94960 7.03531 7.06313 7.10980 7.22799 7.39247 7.79751 8.21100 8.54120 8.81363 9.01069 9.59801 11.09701 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038418 B = 0.003133 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.648622 B = 8934.070727 C = 9218.840253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.063 4.063 3 C -0.127 4.127 4 C -0.002 4.002 5 C -0.510 4.510 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.905 5.905 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.146 3.854 14 N -0.738 5.738 15 C 0.703 3.297 16 O -0.591 6.591 17 N -0.743 5.743 18 C 0.225 3.775 19 C -0.161 4.161 20 C -0.166 4.166 21 C -0.159 4.159 22 C -0.181 4.181 23 C -0.169 4.169 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.394 0.606 36 H 0.393 0.607 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 1.871 25.048 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.063 4.063 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.548 4.548 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.189 1.189 13 C 0.022 3.978 14 N -0.393 5.393 15 C 0.403 3.597 16 O -0.470 6.470 17 N -0.399 5.399 18 C 0.139 3.861 19 C -0.219 4.219 20 C -0.224 4.224 21 C -0.178 4.178 22 C -0.218 4.218 23 C -0.206 4.206 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.229 0.771 36 H 0.226 0.774 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.122 0.878 46 H 0.115 0.885 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.046 0.934 24.930 24.969 hybrid contribution -0.023 0.041 -0.357 0.360 sum -1.070 0.975 24.573 24.615 Atomic orbital electron populations 1.21762 0.94865 1.01204 1.00642 1.20692 0.95775 0.95903 0.93958 1.21757 1.00421 0.95635 1.00638 1.19591 0.96301 0.95502 0.92596 1.21085 1.31784 1.13295 0.88632 0.90418 1.25000 0.95717 0.96768 0.95985 1.69903 1.46017 1.40595 0.97875 0.86857 0.81350 0.83910 0.77647 1.20379 1.21540 1.18944 1.21461 0.98565 0.95589 0.82184 1.45357 1.56209 1.33212 1.04545 1.15973 0.80345 0.82943 0.80411 1.90840 1.42805 1.27540 1.85804 1.45259 1.57027 1.33089 1.04493 1.19475 0.94439 0.92640 0.79588 1.22226 0.94536 1.02528 1.02622 1.22361 1.01102 0.96367 1.02569 1.22457 1.03996 0.99796 0.91524 1.23197 0.92701 1.02441 1.03462 1.22952 0.98934 1.03580 0.95167 0.95080 0.90988 0.93448 0.93439 0.90988 0.95080 0.96346 0.96795 0.92817 0.92112 0.92129 0.77137 0.77391 0.92229 0.89926 0.92869 0.92542 0.89843 0.92262 0.87473 0.88900 0.87832 0.88455 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.66 8.20 -34.44 -0.28 -13.95 16 6 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.87 21.59 27.47 -169.99 -4.67 16.93 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.15 2.47 4.56 -4.05 -0.02 2.45 16 14 N -0.74 -10.37 4.96 -65.23 -0.32 -10.69 16 15 C 0.70 10.25 7.98 -86.92 -0.69 9.56 16 16 O -0.59 -10.65 12.55 5.29 0.07 -10.58 16 17 N -0.74 -8.07 5.11 -52.42 -0.27 -8.34 16 18 C 0.23 2.26 0.92 -131.82 -0.12 2.14 16 19 C -0.16 -1.75 8.19 37.16 0.30 -1.44 16 20 C -0.17 -1.77 6.97 37.16 0.26 -1.51 16 21 C -0.16 -1.21 5.34 -90.61 -0.48 -1.69 16 22 C -0.18 -1.22 9.50 -26.73 -0.25 -1.48 16 23 C -0.17 -1.10 9.40 -26.73 -0.25 -1.36 16 24 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 25 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 29 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 30 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 31 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.39 4.69 6.18 -40.82 -0.25 4.44 16 36 H 0.39 3.29 8.42 -40.82 -0.34 2.95 16 37 H 0.06 0.54 7.00 -51.93 -0.36 0.18 16 38 H 0.08 1.15 6.16 -51.93 -0.32 0.83 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.58 7.23 -51.93 -0.38 0.20 16 41 H 0.08 1.15 6.16 -51.93 -0.32 0.83 16 42 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 43 H 0.11 0.74 8.04 -51.93 -0.42 0.32 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 0.73 5.82 -51.93 -0.30 0.43 16 46 H 0.10 0.63 7.08 -51.93 -0.37 0.27 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -30.92 353.29 -8.35 -39.26 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -8.04 Total: 5.31 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.21 Total: -10.68 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.18 Total: -45.56 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.92 -8.35 -39.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581745370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.027 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds