Wall clock time and date at job start Tue Mar 31 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46851 * 110.99882 * 2 1 4 4 C 1.53036 * 109.52435 * 174.16334 * 3 2 1 5 5 C 1.53118 * 109.27863 * 59.17888 * 4 3 2 6 6 C 1.53116 * 109.15992 * 302.34744 * 5 4 3 7 7 C 1.46851 * 110.99811 * 235.79353 * 2 1 3 8 8 H 1.08994 * 109.46350 * 65.82190 * 7 2 1 9 9 C 1.50701 * 109.46159 * 305.85022 * 7 2 1 10 10 O 1.21280 * 119.99910 * 340.00582 * 9 7 2 11 11 N 1.34773 * 119.99820 * 160.00157 * 9 7 2 12 12 C 1.46497 * 119.99740 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47186 * 180.02562 * 12 11 9 14 14 C 1.53009 * 109.46902 * 300.00548 * 13 12 11 15 15 C 1.52997 * 109.47095 * 59.99728 * 13 12 11 16 16 C 1.52992 * 109.47640 * 180.02562 * 13 12 11 17 17 C 1.50695 * 109.47663 * 179.97438 * 16 13 12 18 18 H 1.08006 * 119.99559 * 0.02562 * 17 16 13 19 19 C 1.37873 * 120.00334 * 179.97438 * 17 16 13 20 20 N 1.31519 * 119.99931 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00205 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46945 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47108 * 120.00233 * 21 19 17 24 24 H 1.48503 * 109.46852 * 240.00356 * 21 19 17 25 25 H 1.09002 * 109.47401 * 56.04503 * 1 2 3 26 26 H 1.09001 * 109.46874 * 296.04515 * 1 2 3 27 27 H 1.09004 * 109.46970 * 176.04649 * 1 2 3 28 28 H 1.09008 * 109.46277 * 294.17746 * 3 2 1 29 29 H 1.08998 * 109.45969 * 54.15446 * 3 2 1 30 30 H 1.09000 * 109.50296 * 179.11929 * 4 3 2 31 31 H 1.09004 * 109.50020 * 299.19897 * 4 3 2 32 32 H 1.08994 * 109.52383 * 62.25280 * 5 4 3 33 33 H 1.08996 * 109.52166 * 182.37800 * 5 4 3 34 34 H 1.09005 * 109.50619 * 177.60011 * 6 5 4 35 35 H 1.09000 * 109.50263 * 297.71296 * 6 5 4 36 36 H 0.97001 * 119.99898 * 0.02562 * 11 9 7 37 37 H 1.08994 * 109.47657 * 299.99867 * 12 11 9 38 38 H 1.09003 * 109.47115 * 60.00382 * 12 11 9 39 39 H 1.09001 * 109.47085 * 59.99449 * 14 13 12 40 40 H 1.08998 * 109.47021 * 180.02562 * 14 13 12 41 41 H 1.09003 * 109.46953 * 299.99524 * 14 13 12 42 42 H 1.09004 * 109.46798 * 60.00790 * 15 13 12 43 43 H 1.08996 * 109.47431 * 180.02562 * 15 13 12 44 44 H 1.08997 * 109.47806 * 300.00615 * 15 13 12 45 45 H 1.09002 * 109.47014 * 300.00302 * 16 13 12 46 46 H 1.09003 * 109.47136 * 59.99912 * 16 13 12 47 47 H 0.96997 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1188 0.5371 -1.0145 6 6 3.5181 -0.8713 -1.0209 7 6 1.9952 -0.7707 -1.1338 8 1 1.7324 -0.2708 -2.0660 9 6 1.3982 -2.1544 -1.1207 10 8 0.9165 -2.5973 -0.0995 11 7 1.3996 -2.8996 -2.2436 12 6 0.8198 -4.2449 -2.2306 13 6 0.9498 -4.8697 -3.6212 14 6 0.2070 -4.0039 -4.6409 15 6 2.4282 -4.9552 -4.0057 16 6 0.3437 -6.2744 -3.6079 17 6 0.4712 -6.8896 -4.9777 18 1 0.9383 -6.3343 -5.7776 19 6 -0.0074 -8.1617 -5.2094 20 7 -0.5758 -8.8380 -4.2351 21 14 0.1513 -8.9245 -6.9071 22 1 0.8238 -7.9654 -7.8198 23 1 0.9562 -10.1691 -6.8173 24 1 -1.1996 -9.2455 -7.4337 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 -1.0253 -0.0709 28 1 1.7324 1.8609 -0.9376 29 1 1.5635 1.9257 0.8331 30 1 3.9098 2.3513 0.1309 31 1 3.7813 0.8575 1.0909 32 1 3.8887 1.0356 -1.9560 33 1 5.1998 0.4725 -0.8912 34 1 3.9099 -1.4302 -1.8708 35 1 3.7814 -1.3834 -0.0955 36 1 1.7852 -2.5455 -3.0602 37 1 1.3492 -4.8618 -1.5046 38 1 -0.2334 -4.1839 -1.9564 39 1 0.6385 -3.0029 -4.6504 40 1 0.2993 -4.4492 -5.6314 41 1 -0.8463 -3.9429 -4.3670 42 1 2.9574 -5.5721 -3.2793 43 1 2.5209 -5.4000 -4.9965 44 1 2.8597 -3.9544 -4.0153 45 1 0.8725 -6.8914 -2.8814 46 1 -0.7096 -6.2131 -3.3342 47 1 -0.9129 -9.7328 -4.3982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588782991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:26 Heat of formation + Delta-G solvation = -55.766373 kcal Electronic energy + Delta-G solvation = -23273.698319 eV Core-core repulsion = 20069.445993 eV Total energy + Delta-G solvation = -3204.252327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37036 -38.31330 -36.89909 -33.91866 -33.38524 -32.18576 -31.21668 -27.34409 -26.97510 -26.53179 -26.15435 -24.02521 -23.12732 -22.52899 -20.42013 -19.83181 -18.31717 -16.99778 -16.39284 -16.04080 -15.48440 -15.15386 -14.81732 -14.57543 -14.43734 -14.27402 -13.92880 -13.34417 -13.18059 -13.11721 -12.91965 -12.71515 -12.41754 -12.07962 -12.04650 -11.77542 -11.54871 -11.19663 -11.07299 -11.03110 -10.92847 -10.84436 -10.66371 -10.63929 -10.41860 -10.25476 -9.89119 -9.56748 -9.14117 -8.92154 -8.71071 -8.44536 -8.37277 -6.01077 -4.02423 2.79162 3.23596 3.29168 3.37410 3.39650 3.84597 4.44062 4.52530 4.59103 4.67124 4.90615 4.96513 5.03951 5.23506 5.32262 5.34507 5.36439 5.42676 5.50951 5.52715 5.61389 5.66405 5.69294 5.73366 5.85031 5.87913 6.01391 6.11324 6.15143 6.21083 6.27291 6.37821 6.56348 6.61154 6.75278 6.81178 6.91717 7.04645 7.05679 7.11670 7.63091 7.75178 7.76513 7.97746 8.38951 8.46479 9.02659 9.60866 11.10421 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036452 B = 0.003271 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.957382 B = 8556.967395 C = 8879.937813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.069 3.931 8 H 0.058 0.942 9 C 0.510 3.490 10 O -0.526 6.526 11 N -0.721 5.721 12 C 0.129 3.871 13 C -0.073 4.073 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.036 3.964 17 C -0.511 4.511 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.019 0.981 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.397 0.603 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.028 0.972 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 20.669 4.726 22.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.043 4.043 8 H 0.075 0.925 9 C 0.295 3.705 10 O -0.402 6.402 11 N -0.374 5.374 12 C 0.006 3.994 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.001 4.001 17 C -0.549 4.549 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.232 0.768 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.176 19.937 5.937 22.005 hybrid contribution -0.149 -0.006 -2.070 2.075 sum 7.027 19.931 3.867 21.484 Atomic orbital electron populations 1.22587 0.86506 1.03920 1.00280 1.61637 1.08341 1.12779 1.41706 1.22138 0.95682 0.88808 1.00532 1.21618 0.94403 1.00102 0.99565 1.21574 1.00193 0.95274 0.98642 1.21546 0.91625 0.97874 1.03518 1.21607 0.96502 0.92604 0.93543 0.92459 1.20347 0.79571 0.86870 0.83726 1.90680 1.45248 1.72523 1.31711 1.46238 1.61160 1.17659 1.12304 1.21619 0.98048 0.80881 0.98820 1.20907 0.96094 0.98915 0.91388 1.21761 0.99410 0.96631 1.00592 1.21756 0.95166 0.98761 1.02706 1.19089 0.95771 0.87808 0.97480 1.21219 1.38089 0.99637 0.95955 0.92211 1.25017 0.95489 0.97388 0.96628 1.69976 1.39873 1.11940 1.31571 0.86596 0.77695 0.79302 0.84749 1.19805 1.21124 1.21134 0.96244 0.91274 0.89270 0.94988 0.90424 0.91450 0.90831 0.92072 0.91253 0.90844 0.90261 0.76821 0.91794 0.91889 0.95337 0.91416 0.93401 0.93329 0.91442 0.95283 0.96329 0.96368 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.20 60.07 0.55 0.73 16 2 N -0.52 -6.23 4.51 -236.31 -1.07 -7.30 16 3 C 0.06 0.51 5.46 -3.83 -0.02 0.49 16 4 C -0.12 -0.93 6.09 -26.65 -0.16 -1.10 16 5 C -0.12 -0.93 6.00 -26.61 -0.16 -1.09 16 6 C -0.11 -1.07 5.36 -26.65 -0.14 -1.22 16 7 C 0.07 0.81 2.24 -68.87 -0.15 0.66 16 8 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 9 C 0.51 7.66 6.16 -10.99 -0.07 7.60 16 10 O -0.53 -9.94 14.60 5.56 0.08 -9.86 16 11 N -0.72 -10.37 4.96 -60.30 -0.30 -10.67 16 12 C 0.13 2.27 4.56 -4.04 -0.02 2.25 16 13 C -0.07 -1.36 0.54 -154.51 -0.08 -1.44 16 14 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 15 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 16 C 0.04 0.88 4.04 -27.89 -0.11 0.76 16 17 C -0.51 -13.47 7.65 -34.44 -0.26 -13.74 16 18 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 21 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.32 5.44 -51.93 -0.28 1.03 16 28 H 0.03 0.27 8.14 -51.92 -0.42 -0.15 16 29 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.40 4.83 6.16 -40.82 -0.25 4.58 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 40 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 44 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -30.62 358.02 -8.86 -39.48 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.55 Total: 0.91 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.13 Total: -8.42 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.63 Total: -43.59 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.62 -8.86 -39.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588782991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.288 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds