Wall clock time and date at job start Tue Mar 31 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99873 * 2 1 4 4 H 1.07999 * 119.99826 * 198.91536 * 3 2 1 5 5 C 1.38813 * 119.99918 * 18.90878 * 3 2 1 6 6 N 1.31619 * 120.00174 * 8.19307 * 5 3 2 7 7 Si 1.86799 * 119.99770 * 188.18944 * 5 3 2 8 8 H 1.48500 * 109.47175 * 90.00315 * 7 5 3 9 9 H 1.48504 * 109.47365 * 210.00364 * 7 5 3 10 10 H 1.48503 * 109.47392 * 330.00305 * 7 5 3 11 11 C 1.46499 * 120.00138 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46882 * 90.00459 * 11 2 1 13 13 H 1.09002 * 109.52204 * 304.91088 * 12 11 2 14 14 C 1.53037 * 109.50076 * 64.99939 * 12 11 2 15 15 C 1.53037 * 109.52574 * 181.31061 * 14 12 11 16 16 C 1.53197 * 109.31305 * 298.64060 * 15 14 12 17 17 N 1.46929 * 108.77488 * 54.63832 * 16 15 14 18 18 C 1.34773 * 120.63038 * 126.37084 * 17 16 15 19 19 O 1.21280 * 119.99609 * 175.11869 * 18 17 16 20 20 C 1.50695 * 120.00258 * 355.12159 * 18 17 16 21 21 C 1.53001 * 109.47166 * 181.03150 * 20 18 17 22 22 C 1.53004 * 109.47091 * 301.03392 * 20 18 17 23 23 C 1.53009 * 109.47016 * 61.03132 * 20 18 17 24 24 C 1.46931 * 118.73628 * 306.38736 * 17 16 15 25 25 H 1.09001 * 109.46767 * 275.42533 * 1 2 3 26 26 H 1.08993 * 109.46899 * 35.43063 * 1 2 3 27 27 H 1.08999 * 109.46844 * 155.42977 * 1 2 3 28 28 H 0.96991 * 119.99908 * 179.97438 * 6 5 3 29 29 H 1.08996 * 109.47493 * 330.00161 * 11 2 1 30 30 H 1.09002 * 109.47125 * 209.99738 * 11 2 1 31 31 H 1.08995 * 109.45866 * 61.29884 * 14 12 11 32 32 H 1.08999 * 109.46065 * 301.32326 * 14 12 11 33 33 H 1.09001 * 109.50355 * 58.59167 * 15 14 12 34 34 H 1.08998 * 109.50159 * 178.65789 * 15 14 12 35 35 H 1.09000 * 109.58427 * 174.42352 * 16 15 14 36 36 H 1.09004 * 109.58563 * 294.70708 * 16 15 14 37 37 H 1.08998 * 109.47029 * 60.00175 * 21 20 18 38 38 H 1.09003 * 109.46742 * 179.97438 * 21 20 18 39 39 H 1.08995 * 109.46999 * 299.99717 * 21 20 18 40 40 H 1.08997 * 109.47163 * 48.95311 * 22 20 18 41 41 H 1.09002 * 109.47023 * 168.94859 * 22 20 18 42 42 H 1.08990 * 109.46653 * 288.94992 * 22 20 18 43 43 H 1.09001 * 109.46588 * 75.93882 * 23 20 18 44 44 H 1.09006 * 109.46915 * 195.93405 * 23 20 18 45 45 H 1.08990 * 109.47080 * 315.93779 * 23 20 18 46 46 H 1.08996 * 109.58359 * 173.39988 * 24 17 16 47 47 H 1.08991 * 109.58953 * 293.82726 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1859 1.2112 -0.3032 5 6 1.5118 2.3556 0.3896 6 7 0.3042 2.3045 0.9108 7 14 2.3672 4.0022 0.1742 8 1 2.0368 4.5607 -1.1615 9 1 1.9085 4.9403 1.2302 10 1 3.8363 3.8148 0.2828 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 1 1.5066 -1.7575 -1.9812 14 6 3.3826 -0.7071 -2.1270 15 6 3.6120 -1.1312 -3.5794 16 6 4.2831 -2.5082 -3.6052 17 7 3.4662 -3.4471 -2.8242 18 6 3.0508 -4.6097 -3.3647 19 8 2.4529 -5.4156 -2.6835 20 6 3.3293 -4.9084 -4.8153 21 6 2.7339 -6.2700 -5.1790 22 6 2.6958 -3.8246 -5.6899 23 6 4.8411 -4.9338 -5.0496 24 6 3.1104 -3.0942 -1.4430 25 1 -0.3633 0.0972 1.0231 26 1 -0.3633 0.8373 -0.5957 27 1 -0.3633 -0.9346 -0.4273 28 1 -0.1413 3.1218 1.1833 29 1 1.6086 -2.0282 0.5147 30 1 3.1500 -1.1381 0.5143 31 1 4.3373 -0.6794 -1.6017 32 1 2.9274 0.2830 -2.1054 33 1 2.6551 -1.1832 -4.0988 34 1 4.2552 -0.4033 -4.0738 35 1 4.3589 -2.8585 -4.6346 36 1 5.2796 -2.4372 -3.1690 37 1 1.6569 -6.2519 -5.0121 38 1 2.9349 -6.4858 -6.2284 39 1 3.1852 -7.0421 -4.5560 40 1 2.9679 -2.8419 -5.3048 41 1 3.0568 -3.9265 -6.7133 42 1 1.6114 -3.9333 -5.6746 43 1 5.2535 -5.8646 -4.6600 44 1 5.0443 -4.8657 -6.1184 45 1 5.3024 -4.0895 -4.5375 46 1 2.4125 -3.8312 -1.0458 47 1 4.0102 -3.0715 -0.8283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590603174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:51 Heat of formation + Delta-G solvation = -11.552541 kcal Electronic energy + Delta-G solvation = -24015.685422 eV Core-core repulsion = 20813.350351 eV Total energy + Delta-G solvation = -3202.335071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72144 -37.75412 -36.04545 -35.37033 -32.67428 -31.64728 -30.26142 -27.62171 -27.44794 -26.09664 -25.63998 -25.41713 -22.41301 -22.18076 -20.73936 -19.40506 -18.59141 -16.73509 -16.49730 -16.05078 -15.24269 -15.16463 -14.57222 -14.27909 -14.06214 -13.86550 -13.65370 -13.31287 -13.23177 -12.79046 -12.55803 -12.42769 -12.38457 -12.22519 -11.89946 -11.82338 -11.54219 -11.27245 -11.13534 -10.96318 -10.88891 -10.84030 -10.68203 -10.39128 -10.25841 -10.18869 -10.03173 -9.73669 -9.66386 -9.40934 -8.51825 -8.41584 -6.73290 -5.67173 -3.11284 2.71186 3.10060 3.38186 3.44013 3.45869 4.32255 4.51208 4.57258 4.70226 4.86175 5.01549 5.11033 5.20653 5.30530 5.35592 5.40204 5.44955 5.48483 5.49998 5.60559 5.67632 5.69052 5.73357 5.80536 5.89656 5.91442 5.98425 5.99923 6.10102 6.16139 6.18692 6.24996 6.42385 6.59632 6.68822 6.75001 6.85790 7.04073 7.04857 7.52785 7.54549 7.76298 7.88434 8.28138 8.42847 9.28898 9.92810 10.40731 11.37379 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029447 B = 0.004163 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.623995 B = 6724.465217 C = 7159.619647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.603 5.603 3 C -0.246 4.246 4 H 0.073 0.927 5 C -0.003 4.003 6 N -0.913 5.913 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.159 3.841 12 C -0.118 4.118 13 H 0.064 0.936 14 C -0.110 4.110 15 C -0.138 4.138 16 C 0.087 3.913 17 N -0.604 5.604 18 C 0.522 3.478 19 O -0.546 6.546 20 C -0.086 4.086 21 C -0.125 4.125 22 C -0.158 4.158 23 C -0.158 4.158 24 C 0.116 3.884 25 H 0.025 0.975 26 H 0.050 0.950 27 H -0.008 1.008 28 H 0.251 0.749 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 -12.014 -13.554 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.326 5.326 3 C -0.376 4.376 4 H 0.090 0.910 5 C -0.201 4.201 6 N -0.559 5.559 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.030 3.970 12 C -0.140 4.140 13 H 0.083 0.917 14 C -0.148 4.148 15 C -0.176 4.176 16 C -0.036 4.036 17 N -0.336 5.336 18 C 0.310 3.690 19 O -0.423 6.423 20 C -0.089 4.089 21 C -0.183 4.183 22 C -0.215 4.215 23 C -0.215 4.215 24 C -0.007 4.007 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.010 0.990 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.177 -12.287 -13.094 19.731 hybrid contribution 0.391 1.083 -0.097 1.156 sum 8.569 -11.204 -13.191 19.312 Atomic orbital electron populations 1.20816 0.82416 0.95246 0.99279 1.43899 1.01939 1.00548 1.86174 1.19264 0.95815 0.84955 1.37532 0.90953 1.24990 0.97131 0.98294 0.99639 1.70098 1.13794 1.26292 1.45744 0.86269 0.78827 0.84250 0.77285 1.21643 1.21807 1.20593 1.20663 0.96048 0.88498 0.91777 1.22215 0.98323 0.92347 1.01095 0.91709 1.21588 0.99169 1.01310 0.92717 1.22018 1.00804 0.95343 0.99415 1.22360 0.94090 0.90103 0.97023 1.48085 1.52247 1.18653 1.14636 1.20539 0.78343 0.80999 0.89152 1.90663 1.41907 1.46762 1.62991 1.20755 0.97559 0.98186 0.92442 1.21656 1.01480 0.94418 1.00697 1.22259 1.01456 0.98495 0.99267 1.22276 0.93150 1.03334 1.02700 1.21728 1.00021 0.97705 0.81213 0.95692 0.93161 0.98994 0.93889 0.94520 0.93525 0.92847 0.88924 0.91777 0.91224 0.88075 0.91573 0.92008 0.92239 0.92051 0.90457 0.91498 0.91953 0.92019 0.91401 0.90768 0.89594 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.20 8.95 59.85 0.54 4.74 16 2 N -0.60 -14.91 2.81 -181.12 -0.51 -15.41 16 3 C -0.25 -6.52 8.13 -15.06 -0.12 -6.64 16 4 H 0.07 1.84 6.85 -52.49 -0.36 1.48 16 5 C 0.00 -0.09 5.21 -17.43 -0.09 -0.18 16 6 N -0.91 -26.58 10.22 55.49 0.57 -26.02 16 7 Si 0.90 21.59 29.56 -169.99 -5.03 16.56 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 C 0.16 3.21 5.15 -4.04 -0.02 3.19 16 12 C -0.12 -2.03 2.54 -90.51 -0.23 -2.26 16 13 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 14 C -0.11 -1.79 4.45 -26.69 -0.12 -1.91 16 15 C -0.14 -1.73 5.76 -26.61 -0.15 -1.88 16 16 C 0.09 0.95 3.84 -3.71 -0.01 0.94 16 17 N -0.60 -8.28 2.97 -172.78 -0.51 -8.80 16 18 C 0.52 7.53 6.48 -10.99 -0.07 7.46 16 19 O -0.55 -9.90 15.42 5.56 0.09 -9.81 16 20 C -0.09 -0.91 0.75 -155.66 -0.12 -1.02 16 21 C -0.12 -1.28 7.68 37.16 0.29 -0.99 16 22 C -0.16 -1.46 8.09 37.16 0.30 -1.16 16 23 C -0.16 -1.30 8.08 37.16 0.30 -1.00 16 24 C 0.12 1.78 5.70 -3.72 -0.02 1.76 16 25 H 0.02 0.68 7.47 -51.93 -0.39 0.29 16 26 H 0.05 1.36 6.93 -51.93 -0.36 1.00 16 27 H -0.01 -0.19 8.03 -51.93 -0.42 -0.61 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 30 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 1.82 6.01 -51.93 -0.31 1.51 16 33 H 0.06 0.85 7.41 -51.93 -0.39 0.46 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.90 2.94 -51.93 -0.15 0.75 16 36 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 37 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.08 0.74 3.97 -51.93 -0.21 0.53 16 41 H 0.07 0.48 7.93 -51.93 -0.41 0.07 16 42 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 44 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 45 H 0.07 0.60 4.78 -51.93 -0.25 0.35 16 46 H 0.09 1.45 7.03 -51.93 -0.37 1.08 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -30.88 345.94 -7.92 -38.80 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -8.20 Total: -1.57 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 0.46 Total: 1.03 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.45 Total: -50.23 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.88 -7.92 -38.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590603174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.248 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds