Wall clock time and date at job start Tue Mar 31 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47067 * 2 1 4 4 C 1.53000 * 109.47314 * 120.00177 * 2 1 3 5 5 H 1.09001 * 109.49508 * 179.80658 * 4 2 1 6 6 C 1.53691 * 109.44436 * 300.02371 * 4 2 1 7 7 N 1.47076 * 108.27891 * 173.95990 * 6 4 2 8 8 C 1.34776 * 120.88336 * 128.75528 * 7 6 4 9 9 O 1.21285 * 119.99960 * 359.72427 * 8 7 6 10 10 C 1.50699 * 120.00376 * 179.72153 * 8 7 6 11 11 C 1.53005 * 109.47202 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46742 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.46686 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00415 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99868 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00136 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46641 * 269.99393 * 17 15 13 19 19 H 1.48502 * 109.46986 * 29.99474 * 17 15 13 20 20 H 1.48493 * 109.47174 * 149.99641 * 17 15 13 21 21 C 1.47081 * 118.23885 * 308.48324 * 7 6 4 22 22 C 1.53243 * 108.51744 * 51.45781 * 21 7 6 23 23 N 1.46898 * 109.33928 * 306.17042 * 22 21 7 24 24 C 1.46900 * 110.99726 * 187.25809 * 23 22 21 25 25 H 1.08999 * 109.47314 * 66.29770 * 1 2 3 26 26 H 1.09006 * 109.47121 * 186.29596 * 1 2 3 27 27 H 1.09000 * 109.47478 * 306.29410 * 1 2 3 28 28 H 1.09005 * 109.47171 * 240.00300 * 2 1 3 29 29 H 1.09001 * 109.47272 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47425 * 299.99977 * 3 2 1 31 31 H 1.08999 * 109.47176 * 60.00444 * 3 2 1 32 32 H 1.09003 * 109.79777 * 54.29851 * 6 4 2 33 33 H 1.09003 * 109.70261 * 293.56626 * 6 4 2 34 34 H 1.09004 * 109.47139 * 60.00140 * 10 8 7 35 35 H 1.08999 * 109.47115 * 300.00213 * 10 8 7 36 36 H 1.08997 * 109.46387 * 60.00377 * 11 10 8 37 37 H 1.08996 * 109.47127 * 299.99953 * 11 10 8 38 38 H 1.08996 * 109.47130 * 60.00025 * 12 11 10 39 39 H 1.08996 * 109.47167 * 299.99801 * 12 11 10 40 40 H 0.96997 * 119.99986 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.63173 * 171.16340 * 21 7 6 42 42 H 1.08995 * 109.62944 * 291.75076 * 21 7 6 43 43 H 1.09001 * 109.49307 * 66.12957 * 22 21 7 44 44 H 1.09005 * 109.48931 * 186.21255 * 22 21 7 45 45 H 1.08994 * 109.47529 * 53.08090 * 24 23 22 46 46 H 1.09007 * 109.47007 * 173.08666 * 24 23 22 47 47 H 1.08998 * 109.47146 * 293.07663 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1300 -0.7245 1.2478 6 6 1.5269 0.0033 2.5037 7 7 1.9076 -0.7896 3.6825 8 6 2.5471 -0.2192 4.7228 9 8 2.8206 0.9621 4.6926 10 6 2.9223 -1.0490 5.9234 11 6 3.6329 -0.1663 6.9515 12 6 4.0144 -1.0090 8.1702 13 6 4.7137 -0.1395 9.1832 14 1 4.8708 0.9091 8.9780 15 6 5.1540 -0.6830 10.3713 16 7 4.9632 -1.9601 10.6210 17 14 6.0215 0.3947 11.6266 18 1 7.4833 0.3799 11.3655 19 1 5.5135 1.7860 11.5199 20 1 5.7574 -0.1254 12.9922 21 6 1.5665 -2.2202 3.6987 22 6 2.0729 -2.8560 2.3996 23 7 1.5458 -2.1047 1.2526 24 6 1.8656 -2.7811 -0.0115 25 1 -0.3634 0.4131 -0.9410 26 1 -0.3634 -1.0215 0.1127 27 1 -0.3634 0.6083 0.8283 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.4416 0.0951 2.4591 33 1 1.9786 0.9933 2.5669 34 1 3.5885 -1.8546 5.6145 35 1 2.0218 -1.4725 6.3681 36 1 2.9671 0.6394 7.2605 37 1 4.5334 0.2568 6.5066 38 1 4.6803 -1.8146 7.8609 39 1 3.1141 -1.4325 8.6154 40 1 5.2727 -2.3423 11.4570 41 1 2.0444 -2.7010 4.5522 42 1 0.4850 -2.3380 3.7667 43 1 3.1624 -2.8294 2.3823 44 1 1.7329 -3.8902 2.3443 45 1 1.5298 -3.8169 0.0355 46 1 1.3614 -2.2726 -0.8334 47 1 2.9430 -2.7555 -0.1749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594345379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:40 Heat of formation + Delta-G solvation = -48.477501 kcal Electronic energy + Delta-G solvation = -23030.372997 eV Core-core repulsion = 19826.436740 eV Total energy + Delta-G solvation = -3203.936257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45553 -38.61595 -35.59836 -34.44467 -34.16510 -32.04603 -30.13182 -29.04256 -27.55027 -27.30380 -24.84851 -24.44691 -23.37207 -21.91330 -20.34817 -19.26338 -18.73685 -16.97263 -16.47956 -16.05950 -15.62161 -15.52649 -15.11910 -14.95212 -14.46180 -14.35766 -14.12970 -13.66000 -13.27064 -13.02872 -12.95008 -12.65753 -12.28930 -12.19465 -12.14710 -11.92326 -11.80150 -11.61082 -11.35683 -11.27758 -11.08760 -10.86022 -10.79379 -10.68385 -10.53727 -10.51456 -9.65279 -9.60729 -9.23539 -8.99500 -8.82867 -8.41849 -8.30467 -5.96273 -3.97509 2.91632 3.03423 3.35843 3.41552 3.46628 3.58015 4.41329 4.50473 4.53520 4.64622 4.82789 4.87580 4.93994 5.02931 5.06622 5.18850 5.24113 5.28019 5.35972 5.39820 5.44364 5.46882 5.57039 5.59271 5.66149 5.70342 5.71080 5.74871 5.76082 5.84189 5.92351 6.06857 6.15968 6.26209 6.51029 6.71405 6.74872 6.76584 6.95802 7.18155 7.51812 7.72752 7.85640 8.04616 8.43831 8.48901 9.09581 9.66377 11.15275 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032787 B = 0.003041 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.804850 B = 9206.410984 C = 9760.134555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.152 4.152 4 C 0.076 3.924 5 H 0.045 0.955 6 C 0.119 3.881 7 N -0.625 5.625 8 C 0.515 3.485 9 O -0.538 6.538 10 C -0.137 4.137 11 C -0.095 4.095 12 C 0.021 3.979 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.273 1.273 20 H -0.287 1.287 21 C 0.111 3.889 22 C 0.039 3.961 23 N -0.535 5.535 24 C 0.021 3.979 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.627 -2.600 -24.150 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.210 4.210 4 C -0.033 4.033 5 H 0.063 0.937 6 C -0.004 4.004 7 N -0.360 5.360 8 C 0.305 3.695 9 O -0.415 6.415 10 C -0.177 4.177 11 C -0.133 4.133 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.198 1.198 20 H -0.213 1.213 21 C -0.012 4.012 22 C -0.089 4.089 23 N -0.260 5.260 24 C -0.127 4.127 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.946 -2.072 -23.953 26.019 hybrid contribution 1.396 0.255 0.578 1.532 sum -8.549 -1.817 -23.376 24.956 Atomic orbital electron populations 1.21825 0.94266 1.02869 1.01098 1.21175 0.97038 0.95977 0.96647 1.21911 1.01129 0.95631 1.02304 1.22151 0.97181 0.88454 0.95528 0.93700 1.21867 1.00308 0.95526 0.82707 1.48314 1.59301 1.09947 1.18410 1.21288 0.75933 0.88472 0.83801 1.90659 1.53816 1.16552 1.80429 1.21862 1.02331 0.99674 0.93790 1.21454 0.98902 0.97776 0.95152 1.19127 0.96440 0.94932 0.91117 1.21279 1.36821 0.95870 1.01592 0.92587 1.25020 0.96220 0.95004 0.98272 1.69963 1.47324 1.11652 1.24846 0.86594 0.79939 0.80838 0.80664 1.20699 1.19822 1.21259 1.21837 1.01177 0.80577 0.97619 1.22525 0.97923 0.97895 0.90574 1.61951 1.59577 1.01833 1.02644 1.22428 0.98886 0.99302 0.92037 0.93330 0.91242 0.92552 0.90953 0.92691 0.92362 0.91973 0.90813 0.88686 0.89541 0.89359 0.92688 0.92792 0.96668 0.96591 0.93086 0.88662 0.90653 0.94231 0.89366 0.91364 0.90836 0.95740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.41 37.15 0.31 -0.77 16 2 C -0.09 -0.72 2.21 -90.63 -0.20 -0.92 16 3 C -0.15 -1.23 8.85 37.16 0.33 -0.91 16 4 C 0.08 0.76 1.84 -67.35 -0.12 0.63 16 5 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 6 C 0.12 1.42 5.13 -3.37 -0.02 1.40 16 7 N -0.62 -8.35 3.00 -172.18 -0.52 -8.86 16 8 C 0.52 8.79 7.71 -10.99 -0.08 8.70 16 9 O -0.54 -11.16 15.43 5.55 0.09 -11.07 16 10 C -0.14 -2.34 4.07 -27.88 -0.11 -2.46 16 11 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 17 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 C 0.11 1.14 6.50 -3.60 -0.02 1.12 16 22 C 0.04 0.35 5.62 -3.70 -0.02 0.33 16 23 N -0.54 -4.79 3.87 -234.30 -0.91 -5.70 16 24 C 0.02 0.15 8.77 60.06 0.53 0.68 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.56 7.08 -51.93 -0.37 0.19 16 27 H 0.06 0.46 6.65 -51.93 -0.35 0.11 16 28 H 0.07 0.54 6.40 -51.93 -0.33 0.20 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.55 6.58 -51.93 -0.34 0.21 16 32 H 0.07 0.84 6.32 -51.93 -0.33 0.51 16 33 H 0.09 1.29 5.73 -51.93 -0.30 1.00 16 34 H 0.09 1.35 7.66 -51.93 -0.40 0.95 16 35 H 0.09 1.38 8.00 -51.93 -0.42 0.96 16 36 H 0.05 1.27 8.10 -51.93 -0.42 0.84 16 37 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.10 0.93 6.02 -51.93 -0.31 0.62 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 0.63 8.03 -51.93 -0.42 0.21 16 45 H 0.07 0.42 8.03 -51.93 -0.42 0.01 16 46 H 0.07 0.48 6.04 -51.93 -0.31 0.16 16 47 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -32.97 357.60 -8.79 -41.76 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -8.47 Total: -4.26 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.08 Total: -7.91 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.69 Total: -41.08 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.97 -8.79 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594345379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.713 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds