Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46772 * 2 1 4 4 C 1.53005 * 109.46924 * 299.99538 * 3 2 1 5 5 C 1.53003 * 109.47360 * 59.99720 * 3 2 1 6 6 N 1.46505 * 109.47010 * 179.97438 * 3 2 1 7 7 C 1.46500 * 119.99955 * 359.97438 * 6 3 2 8 8 C 1.34769 * 119.99856 * 179.97438 * 6 3 2 9 9 O 1.21587 * 120.00457 * 6.55510 * 8 6 3 10 10 N 1.34783 * 120.00079 * 186.55724 * 8 6 3 11 11 C 1.46927 * 120.62497 * 18.74756 * 10 8 6 12 12 C 1.53629 * 108.54224 * 126.37003 * 11 10 8 13 13 C 1.53037 * 109.24189 * 54.85304 * 12 11 10 14 14 C 1.53046 * 109.53827 * 298.51255 * 13 12 11 15 15 H 1.08998 * 109.49518 * 301.41531 * 14 13 12 16 16 C 1.50698 * 109.52082 * 181.33278 * 14 13 12 17 17 H 1.08007 * 120.00093 * 240.13928 * 16 14 13 18 18 C 1.37879 * 119.99960 * 60.14662 * 16 14 13 19 19 N 1.31505 * 120.00319 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99704 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47310 * 59.99858 * 20 18 16 22 22 H 1.48501 * 109.46855 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47024 * 299.99723 * 20 18 16 24 24 C 1.46917 * 120.63393 * 199.02533 * 10 8 6 25 25 H 1.09001 * 109.47137 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47289 * 300.00205 * 1 2 3 27 27 H 1.09000 * 109.47067 * 60.00458 * 1 2 3 28 28 H 1.08996 * 109.47289 * 239.99795 * 2 1 3 29 29 H 1.09000 * 109.47067 * 119.99542 * 2 1 3 30 30 H 1.09001 * 109.46959 * 180.02562 * 4 3 2 31 31 H 1.08998 * 109.46592 * 60.00238 * 4 3 2 32 32 H 1.09004 * 109.47117 * 300.00087 * 4 3 2 33 33 H 1.09001 * 109.46963 * 300.00091 * 5 3 2 34 34 H 1.09000 * 109.47176 * 60.00031 * 5 3 2 35 35 H 1.09003 * 109.46640 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46962 * 84.65572 * 7 6 3 37 37 H 1.08993 * 109.46936 * 204.65607 * 7 6 3 38 38 H 1.09006 * 109.47108 * 324.65938 * 7 6 3 39 39 H 1.09005 * 109.58718 * 246.19881 * 11 10 8 40 40 H 1.09001 * 109.59301 * 6.62474 * 11 10 8 41 41 H 1.09004 * 109.63203 * 294.85977 * 12 11 10 42 42 H 1.09005 * 109.45681 * 174.73975 * 12 11 10 43 43 H 1.09003 * 109.46017 * 178.49348 * 13 12 11 44 44 H 1.09004 * 109.44972 * 58.52350 * 13 12 11 45 45 H 0.97005 * 120.00453 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.58689 * 353.37150 * 24 10 8 47 47 H 1.09000 * 109.58571 * 113.65571 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1637 -1.2494 5 6 1.5299 2.1639 1.2492 6 7 3.5050 1.4426 0.0006 7 6 4.2375 0.1739 0.0017 8 6 4.1787 2.6098 0.0002 9 8 3.5767 3.6594 0.1195 10 7 5.5200 2.6137 -0.1325 11 6 6.2216 1.4434 -0.6776 12 6 7.1012 1.9035 -1.8501 13 6 8.0267 3.0263 -1.3760 14 6 7.1879 4.2174 -0.9072 15 1 6.5559 4.5619 -1.7257 16 6 8.1000 5.3350 -0.4711 17 1 8.0577 5.7016 0.5440 18 6 8.9882 5.8897 -1.3680 19 7 9.0392 5.4439 -2.6041 20 14 10.1182 7.2756 -0.8276 21 1 10.9799 6.8057 0.2867 22 1 10.9697 7.6939 -1.9700 23 1 9.3027 8.4293 -0.3701 24 6 6.3088 3.7857 0.2707 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8936 3.1913 -1.2496 31 1 0.4400 2.1636 -1.2493 32 1 1.8934 1.6499 -2.1393 33 1 0.4398 2.1638 1.2492 34 1 1.8932 1.6501 2.1392 35 1 1.8928 3.1917 1.2489 36 1 4.3367 -0.1892 -1.0213 37 1 5.2278 0.3266 0.4307 38 1 3.6929 -0.5596 0.5964 39 1 6.8450 0.9974 0.0974 40 1 5.4939 0.7123 -1.0298 41 1 6.4700 2.2698 -2.6598 42 1 7.6994 1.0647 -2.2062 43 1 8.6712 3.3372 -2.1983 44 1 8.6401 2.6665 -0.5498 45 1 9.6644 5.8339 -3.2351 46 1 5.6387 4.6006 0.5444 47 1 6.9373 3.5275 1.1230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594803660.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = 4.655205 kcal Electronic energy + Delta-G solvation = -24259.294100 eV Core-core repulsion = 21057.661849 eV Total energy + Delta-G solvation = -3201.632250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.61978 -37.91810 -36.33068 -34.46254 -32.80338 -31.19742 -30.39151 -29.61559 -27.17950 -26.99306 -25.28743 -24.24617 -23.69856 -21.59515 -20.47341 -18.99232 -18.33342 -16.81411 -16.24433 -15.97190 -15.67312 -14.98061 -14.80047 -14.49348 -13.84259 -13.78058 -13.40663 -13.14279 -12.98567 -12.81969 -12.70133 -12.37127 -12.20495 -12.17261 -12.01493 -11.65218 -11.53776 -11.36207 -11.17194 -10.92038 -10.84219 -10.72629 -10.66178 -10.54635 -10.12604 -9.79288 -9.65451 -9.39509 -9.10799 -8.76275 -8.45098 -8.29743 -7.65912 -5.96666 -4.03715 2.95638 3.34251 3.38480 3.41735 3.59416 4.15175 4.46773 4.65039 4.79605 4.97998 5.02668 5.21049 5.29971 5.32620 5.40656 5.42855 5.52312 5.60885 5.72325 5.77686 5.78789 5.81255 5.85702 5.89050 5.94951 6.03566 6.09248 6.11096 6.37571 6.40964 6.48352 6.55258 6.57826 6.70667 6.84835 6.93499 7.10357 7.22377 7.33556 7.54810 7.74526 8.02389 8.14192 8.41105 8.46484 8.98531 9.09197 9.60649 11.08721 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033233 B = 0.004173 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.328096 B = 6707.493359 C = 7086.072743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.193 3.807 4 C -0.163 4.163 5 C -0.165 4.165 6 N -0.631 5.631 7 C 0.063 3.937 8 C 0.710 3.290 9 O -0.585 6.585 10 N -0.624 5.624 11 C 0.081 3.919 12 C -0.135 4.135 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.030 0.970 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.137 3.863 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.093 0.907 44 H 0.033 0.967 45 H 0.260 0.740 46 H 0.076 0.924 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.336 -14.519 3.968 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C 0.108 3.892 4 C -0.221 4.221 5 C -0.223 4.223 6 N -0.370 5.370 7 C -0.080 4.080 8 C 0.413 3.587 9 O -0.463 6.463 10 N -0.361 5.361 11 C -0.042 4.042 12 C -0.174 4.174 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.048 0.952 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.202 1.202 24 C 0.015 3.985 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.553 -13.890 3.869 19.118 hybrid contribution 0.877 0.563 0.127 1.049 sum -11.677 -13.328 3.996 18.164 Atomic orbital electron populations 1.21876 0.94926 1.01659 1.02532 1.21846 0.96577 0.95484 1.02219 1.20136 0.78131 0.94919 0.96023 1.22262 1.00627 1.02839 0.96410 1.22333 1.00322 1.03463 0.96163 1.47237 1.05575 1.04841 1.79337 1.22498 0.98395 0.86561 1.00527 1.15916 0.81720 0.83323 0.77713 1.90797 1.67208 1.30516 1.57819 1.47430 1.04035 1.18209 1.66414 1.22866 0.96366 0.88772 0.96155 1.22110 0.98618 0.99589 0.97042 1.21603 0.98003 0.93715 1.01541 1.18949 0.93035 0.93092 0.92748 0.95227 1.21059 1.19542 1.17397 0.97223 0.92618 1.24931 0.97194 0.96825 0.94851 1.69869 1.37183 1.41993 1.03763 0.86656 0.80664 0.82655 0.78001 1.20304 1.21358 1.20241 1.21832 0.93061 0.85217 0.98354 0.92665 0.92127 0.92118 0.91503 0.91403 0.90332 0.91919 0.93076 0.92231 0.93274 0.89536 0.92677 0.89219 0.91925 0.92511 0.88373 0.92608 0.92869 0.88899 0.94817 0.92999 0.90578 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.21 37.16 0.34 -0.85 16 2 C -0.12 -1.14 3.83 -26.73 -0.10 -1.24 16 3 C 0.19 2.44 0.82 -131.81 -0.11 2.33 16 4 C -0.16 -2.18 8.05 37.16 0.30 -1.88 16 5 C -0.16 -2.16 8.04 37.16 0.30 -1.86 16 6 N -0.63 -9.18 2.82 -187.24 -0.53 -9.71 16 7 C 0.06 0.68 7.59 59.85 0.45 1.14 16 8 C 0.71 13.49 7.40 -86.92 -0.64 12.85 16 9 O -0.59 -12.96 12.16 5.29 0.06 -12.90 16 10 N -0.62 -12.02 2.91 -178.23 -0.52 -12.54 16 11 C 0.08 1.28 4.39 -3.48 -0.02 1.27 16 12 C -0.14 -2.50 6.10 -26.38 -0.16 -2.66 16 13 C -0.11 -2.55 4.96 -26.69 -0.13 -2.68 16 14 C 0.04 1.04 2.25 -91.65 -0.21 0.83 16 15 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.51 -14.19 8.56 -34.44 -0.29 -14.48 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.45 11.32 55.43 0.63 -24.82 16 20 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.14 3.05 5.66 -3.72 -0.02 3.03 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 27 H 0.06 0.48 6.43 -51.93 -0.33 0.14 16 28 H 0.07 0.59 7.78 -51.93 -0.40 0.19 16 29 H 0.07 0.59 6.87 -51.93 -0.36 0.23 16 30 H 0.08 1.33 6.39 -51.93 -0.33 1.00 16 31 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 1.43 5.96 -51.93 -0.31 1.12 16 36 H 0.06 0.54 6.93 -51.93 -0.36 0.18 16 37 H 0.09 1.02 4.72 -51.93 -0.24 0.77 16 38 H 0.06 0.55 6.00 -51.93 -0.31 0.24 16 39 H 0.06 0.83 7.62 -51.93 -0.40 0.43 16 40 H 0.10 1.30 3.44 -70.12 -0.24 1.06 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 2.42 6.05 -51.93 -0.31 2.11 16 44 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.08 1.82 7.10 -51.93 -0.37 1.46 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -30.77 337.98 -8.56 -39.33 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.90 Total: 1.69 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -0.38 Total: -2.54 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.42 Total: -47.06 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.06 Total: -12.90 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.77 -8.56 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594803660.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.987 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds