Wall clock time and date at job start Tue Mar 31 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47056 * 2 1 4 4 C 1.52993 * 109.47652 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47082 * 54.99392 * 4 3 2 6 6 C 1.52999 * 109.47816 * 174.99980 * 4 3 2 7 7 C 1.52992 * 109.47663 * 184.99907 * 6 4 3 8 8 N 1.46506 * 109.47019 * 295.00134 * 4 3 2 9 9 C 1.34774 * 119.99889 * 154.99800 * 8 4 3 10 10 O 1.21586 * 120.00160 * 354.72285 * 9 8 4 11 11 N 1.34776 * 119.99702 * 174.73124 * 9 8 4 12 12 C 1.46920 * 120.63339 * 5.20636 * 11 9 8 13 13 C 1.53196 * 108.77751 * 126.37002 * 12 11 9 14 14 C 1.53036 * 109.31166 * 54.63571 * 13 12 11 15 15 C 1.53039 * 109.53943 * 298.63516 * 14 13 12 16 16 H 1.09003 * 109.49909 * 301.41388 * 15 14 13 17 17 C 1.50704 * 109.49967 * 181.31895 * 15 14 13 18 18 H 1.07998 * 119.99817 * 359.97438 * 17 15 14 19 19 C 1.37874 * 120.00089 * 180.02562 * 17 15 14 20 20 N 1.31519 * 119.99722 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99945 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47446 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47008 * 119.99631 * 21 19 17 24 24 H 1.48500 * 109.46960 * 239.99475 * 21 19 17 25 25 C 1.46929 * 120.63028 * 184.92537 * 11 9 8 26 26 H 1.08993 * 109.47189 * 299.99447 * 1 2 3 27 27 H 1.09009 * 109.46735 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46964 * 60.00629 * 1 2 3 29 29 H 1.09001 * 109.47514 * 119.99829 * 2 1 3 30 30 H 1.09003 * 109.47386 * 239.99788 * 2 1 3 31 31 H 1.09006 * 109.47252 * 300.00091 * 3 2 1 32 32 H 1.09003 * 109.47196 * 59.99672 * 3 2 1 33 33 H 1.08998 * 109.46818 * 305.00252 * 6 4 3 34 34 H 1.09004 * 109.46872 * 64.99970 * 6 4 3 35 35 H 1.08999 * 109.47647 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.46938 * 300.00407 * 7 6 4 37 37 H 1.09004 * 109.46925 * 60.00096 * 7 6 4 38 38 H 0.96998 * 119.99774 * 335.00041 * 8 4 3 39 39 H 1.09001 * 109.58838 * 246.15987 * 12 11 9 40 40 H 1.09005 * 109.58491 * 6.58262 * 12 11 9 41 41 H 1.08999 * 109.49773 * 174.58768 * 13 12 11 42 42 H 1.08996 * 109.49598 * 294.68389 * 13 12 11 43 43 H 1.08998 * 109.45979 * 58.65888 * 14 13 12 44 44 H 1.09001 * 109.46169 * 178.61822 * 14 13 12 45 45 H 0.97006 * 119.99853 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58685 * 353.42171 * 25 11 9 47 47 H 1.08999 * 109.58518 * 113.84084 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0800 2.8796 -0.1251 7 6 5.6048 2.8706 -0.2498 8 7 4.0578 0.8591 1.2528 9 6 5.2797 0.2926 1.3011 10 8 5.9381 0.1796 0.2852 11 7 5.7719 -0.1487 2.4757 12 6 4.9456 -0.1237 3.6903 13 6 4.9323 -1.5262 4.3065 14 6 6.3719 -1.9923 4.5351 15 6 7.1067 -2.0608 3.1944 16 1 6.5837 -2.7460 2.5273 17 6 8.5144 -2.5508 3.4168 18 1 8.8518 -2.7893 4.4146 19 6 9.3718 -2.6936 2.3466 20 7 8.9610 -2.4027 1.1315 21 14 11.1164 -3.3017 2.6221 22 1 11.3286 -3.5579 4.0693 23 1 11.3287 -4.5585 1.8602 24 1 12.0791 -2.2716 2.1559 25 6 7.1428 -0.6696 2.5645 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.6457 3.3431 -1.0109 34 1 3.7912 3.4464 0.7601 35 1 5.9681 3.8943 -0.3398 36 1 6.0390 2.4071 0.6361 37 1 5.8936 2.3038 -1.1350 38 1 3.5013 0.8804 2.0470 39 1 5.3662 0.5849 4.4038 40 1 3.9284 0.1726 3.4342 41 1 4.4027 -1.5002 5.2588 42 1 4.4296 -2.2164 3.6290 43 1 6.8814 -1.2883 5.1930 44 1 6.3649 -2.9800 4.9961 45 1 9.5641 -2.5035 0.3785 46 1 7.5750 -0.7332 1.5658 47 1 7.7462 -0.0064 3.1843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595476058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:54 Heat of formation + Delta-G solvation = -54.995705 kcal Electronic energy + Delta-G solvation = -23869.948102 eV Core-core repulsion = 20665.729194 eV Total energy + Delta-G solvation = -3204.218908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.90078 -37.54621 -36.04866 -33.61126 -33.38198 -32.06789 -31.18868 -29.67312 -28.43833 -25.03514 -24.54769 -23.82779 -21.78924 -21.11425 -20.87828 -19.94912 -18.75812 -17.37194 -16.31077 -16.08790 -15.18206 -14.86324 -14.52832 -14.17570 -14.08356 -13.72254 -13.65093 -13.30446 -13.04642 -12.61170 -12.55564 -12.37509 -12.29947 -12.16283 -11.84610 -11.71490 -11.25969 -11.03163 -10.96626 -10.89076 -10.72795 -10.59185 -10.51763 -10.43920 -10.32258 -10.18458 -9.82424 -9.29483 -9.04443 -8.88480 -8.54774 -8.37634 -7.56290 -5.93948 -4.03161 3.30677 3.36333 3.41510 3.44407 3.95065 4.43243 4.51169 4.63237 4.91738 4.94641 5.27179 5.33344 5.33610 5.36017 5.39737 5.45902 5.54178 5.65699 5.67245 5.70681 5.76246 5.92748 6.00960 6.01691 6.08453 6.17891 6.19669 6.21867 6.27787 6.35220 6.42148 6.63969 6.72482 6.76524 6.86122 7.00259 7.05172 7.11127 7.42965 7.59608 7.81053 7.99083 8.12839 8.46243 8.69889 9.00825 9.38332 9.62309 11.10791 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.004647 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.834935 B = 6023.326431 C = 6622.181939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.124 4.124 4 C 0.161 3.839 5 H 0.088 0.912 6 C -0.131 4.131 7 C -0.144 4.144 8 N -0.750 5.750 9 C 0.701 3.299 10 O -0.578 6.578 11 N -0.625 5.625 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.521 4.521 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.130 3.870 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.387 0.613 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.262 0.738 46 H 0.124 0.876 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.444 8.878 0.889 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.163 4.163 4 C 0.055 3.945 5 H 0.106 0.894 6 C -0.170 4.170 7 C -0.201 4.201 8 N -0.409 5.409 9 C 0.403 3.597 10 O -0.455 6.455 11 N -0.361 5.361 12 C -0.008 4.008 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.019 3.981 16 H 0.046 0.954 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.718 3.282 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.009 3.991 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.223 0.777 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.141 0.859 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.850 8.807 -0.065 17.265 hybrid contribution 0.632 -0.306 0.607 0.928 sum -14.218 8.500 0.542 16.574 Atomic orbital electron populations 1.21775 0.96089 1.01517 1.01450 1.21521 0.95311 0.96645 1.02802 1.21899 0.94494 0.97362 1.02500 1.20825 0.92287 0.93649 0.87750 0.89427 1.21956 0.97398 0.96524 1.01149 1.21751 0.94794 0.99976 1.03588 1.45417 1.17875 1.64499 1.13149 1.15913 0.81198 0.78357 0.84250 1.90928 1.59500 1.62397 1.32665 1.47784 1.16582 1.65782 1.05994 1.21462 0.93755 0.97654 0.87930 1.21943 0.99433 0.96312 0.99462 1.21607 0.93057 0.99632 1.00407 1.18910 0.95330 0.92947 0.90871 0.95419 1.21110 0.96491 1.44773 0.93573 0.92410 1.25054 0.98523 0.95198 0.95244 1.69918 1.35577 1.47519 0.98485 0.86566 0.84947 0.78493 0.78176 1.19833 1.21051 1.21005 1.22051 0.76903 0.94561 1.05583 0.92953 0.92865 0.92933 0.91728 0.91808 0.90745 0.91790 0.91836 0.92465 0.94205 0.92065 0.92136 0.77690 0.92353 0.92248 0.92460 0.92256 0.93269 0.93163 0.92771 0.85850 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.28 5.82 -26.73 -0.16 -1.43 16 3 C -0.12 -1.20 4.75 -26.74 -0.13 -1.32 16 4 C 0.16 2.09 2.26 -67.93 -0.15 1.94 16 5 H 0.09 1.38 7.51 -51.93 -0.39 0.99 16 6 C -0.13 -1.62 5.61 -26.74 -0.15 -1.77 16 7 C -0.14 -2.23 8.58 37.15 0.32 -1.91 16 8 N -0.75 -11.08 4.39 -58.67 -0.26 -11.34 16 9 C 0.70 14.08 6.67 -86.92 -0.58 13.50 16 10 O -0.58 -14.10 13.33 5.29 0.07 -14.03 16 11 N -0.62 -12.61 2.98 -178.76 -0.53 -13.14 16 12 C 0.12 1.81 6.39 -3.71 -0.02 1.79 16 13 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 14 C -0.11 -2.20 5.11 -26.69 -0.14 -2.33 16 15 C 0.04 0.97 2.24 -91.87 -0.21 0.76 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -14.27 8.56 -34.44 -0.29 -14.56 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.88 -25.95 11.39 55.43 0.63 -25.31 16 21 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.13 3.19 5.39 -3.93 -0.02 3.16 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 1.13 5.76 -51.93 -0.30 0.83 16 37 H 0.06 1.04 7.92 -51.93 -0.41 0.62 16 38 H 0.39 4.78 6.09 -40.82 -0.25 4.53 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.74 5.64 -51.93 -0.29 0.44 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.12 3.56 5.10 -51.93 -0.27 3.29 16 47 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -31.10 357.72 -9.75 -40.85 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.61 Total: 4.86 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.42 Total: -3.73 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.16 Total: -49.80 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.07 Total: -14.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.10 -9.75 -40.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595476058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.144 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds