Wall clock time and date at job start Tue Mar 31 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47311 * 2 1 4 4 C 1.53004 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46990 * 54.99944 * 4 3 2 6 6 C 1.52990 * 109.47270 * 175.00102 * 4 3 2 7 7 C 1.52997 * 109.47176 * 185.00194 * 6 4 3 8 8 N 1.46502 * 109.47218 * 295.00341 * 4 3 2 9 9 C 1.34773 * 120.00119 * 155.27170 * 8 4 3 10 10 O 1.21585 * 119.99906 * 354.50559 * 9 8 4 11 11 N 1.34775 * 119.99644 * 174.50170 * 9 8 4 12 12 C 1.46923 * 120.63669 * 5.02365 * 11 9 8 13 13 C 1.53191 * 108.77876 * 233.58417 * 12 11 9 14 14 C 1.53042 * 109.30936 * 305.36536 * 13 12 11 15 15 C 1.53038 * 109.53989 * 61.36381 * 14 13 12 16 16 H 1.08998 * 109.49964 * 58.58647 * 15 14 13 17 17 C 1.50705 * 109.49622 * 178.68078 * 15 14 13 18 18 H 1.07999 * 119.99680 * 0.02562 * 17 15 14 19 19 C 1.37870 * 119.99830 * 180.02562 * 17 15 14 20 20 N 1.31511 * 120.00441 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99879 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47240 * 89.99622 * 21 19 17 23 23 H 1.48500 * 109.47068 * 209.99926 * 21 19 17 24 24 H 1.48500 * 109.46954 * 329.99872 * 21 19 17 25 25 C 1.46935 * 120.62794 * 184.74160 * 11 9 8 26 26 H 1.08995 * 109.46777 * 59.99807 * 1 2 3 27 27 H 1.08997 * 109.47121 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46664 * 299.99983 * 1 2 3 29 29 H 1.08998 * 109.46664 * 240.00017 * 2 1 3 30 30 H 1.09004 * 109.47021 * 120.00276 * 2 1 3 31 31 H 1.08998 * 109.47243 * 60.00371 * 3 2 1 32 32 H 1.09004 * 109.47303 * 300.00102 * 3 2 1 33 33 H 1.08998 * 109.47353 * 304.99987 * 6 4 3 34 34 H 1.09000 * 109.47323 * 65.00224 * 6 4 3 35 35 H 1.09007 * 109.47232 * 299.99700 * 7 6 4 36 36 H 1.09009 * 109.47546 * 59.99661 * 7 6 4 37 37 H 1.09004 * 109.47427 * 179.97438 * 7 6 4 38 38 H 0.96999 * 119.99809 * 334.99672 * 8 4 3 39 39 H 1.09000 * 109.58442 * 353.37176 * 12 11 9 40 40 H 1.08998 * 109.59073 * 113.65073 * 12 11 9 41 41 H 1.09004 * 109.49670 * 65.31182 * 13 12 11 42 42 H 1.08996 * 109.49800 * 185.40992 * 13 12 11 43 43 H 1.09003 * 109.45781 * 181.38399 * 14 13 12 44 44 H 1.08993 * 109.45768 * 301.35234 * 14 13 12 45 45 H 0.96999 * 120.00212 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58363 * 246.20783 * 25 11 9 47 47 H 1.09000 * 109.58469 * 6.62485 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9331 0.8531 -0.8427 6 6 4.0801 2.8793 -0.1263 7 6 5.6048 2.8702 -0.2524 8 7 4.0590 0.8584 1.2508 9 6 5.2832 0.2968 1.2994 10 8 5.9413 0.1847 0.2833 11 7 5.7777 -0.1406 2.4744 12 6 4.9535 -0.1131 3.6903 13 6 5.7166 0.6372 4.7865 14 6 7.0932 -0.0045 4.9746 15 6 7.8898 0.1017 3.6722 16 1 7.9910 1.1502 3.3922 17 6 9.2568 -0.5015 3.8682 18 1 9.5304 -0.9194 4.8257 19 6 10.1582 -0.5198 2.8250 20 7 9.8248 -0.0114 1.6589 21 14 11.8524 -1.2682 3.0677 22 1 11.8086 -2.7132 2.7282 23 1 12.8282 -0.5813 2.1837 24 1 12.2674 -1.1049 4.4842 25 6 7.1494 -0.6599 2.5624 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.6451 3.3431 -1.0116 34 1 3.7921 3.4459 0.7593 35 1 6.0399 2.4064 0.6330 36 1 5.8929 2.3036 -1.1380 37 1 5.9681 3.8940 -0.3424 38 1 3.5032 0.8796 2.0455 39 1 4.0138 0.3991 3.4833 40 1 4.7495 -1.1328 4.0168 41 1 5.8383 1.6807 4.4959 42 1 5.1586 0.5821 5.7211 43 1 7.6288 0.5121 5.7711 44 1 6.9710 -1.0543 5.2408 45 1 10.4589 -0.0246 0.9249 46 1 7.1230 -1.7233 2.8001 47 1 7.6591 -0.5087 1.6109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595476060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:02 Heat of formation + Delta-G solvation = -54.955298 kcal Electronic energy + Delta-G solvation = -23912.843824 eV Core-core repulsion = 20708.626668 eV Total energy + Delta-G solvation = -3204.217156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.89792 -37.51953 -36.05364 -33.61441 -33.36929 -32.04989 -31.16442 -29.64773 -28.42757 -25.03817 -24.53962 -23.78805 -21.79376 -21.11422 -20.85199 -19.94226 -18.75162 -17.40207 -16.26398 -16.10858 -15.12543 -14.87616 -14.59513 -14.19091 -14.06165 -13.68156 -13.65221 -13.28931 -12.99526 -12.67342 -12.55507 -12.36333 -12.27576 -12.08198 -11.90174 -11.65990 -11.21699 -11.00750 -10.95770 -10.86930 -10.74761 -10.51766 -10.49529 -10.47083 -10.32156 -10.18812 -9.82598 -9.30321 -9.05326 -8.90146 -8.53248 -8.38412 -7.56338 -5.94787 -4.03508 3.31065 3.36415 3.41132 3.43344 3.96607 4.42677 4.50600 4.62940 4.89185 4.93253 5.27918 5.33751 5.35597 5.36498 5.40217 5.49242 5.54484 5.65206 5.66909 5.71543 5.79011 5.91411 6.00861 6.01671 6.11738 6.16941 6.20457 6.27149 6.32990 6.34951 6.52410 6.63237 6.71544 6.86012 6.92472 7.00567 7.04928 7.13174 7.40342 7.58502 7.80527 7.98125 8.11200 8.45396 8.69726 8.99892 9.37887 9.61848 11.10261 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022239 B = 0.004561 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.726522 B = 6137.510179 C = 6679.521716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.125 4.125 4 C 0.162 3.838 5 H 0.087 0.913 6 C -0.132 4.132 7 C -0.144 4.144 8 N -0.750 5.750 9 C 0.702 3.298 10 O -0.580 6.580 11 N -0.625 5.625 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.109 4.109 15 C 0.040 3.960 16 H 0.028 0.972 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.131 3.869 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.387 0.613 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.263 0.737 46 H 0.036 0.964 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.501 3.116 -0.344 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.163 4.163 4 C 0.056 3.944 5 H 0.105 0.895 6 C -0.171 4.171 7 C -0.201 4.201 8 N -0.409 5.409 9 C 0.404 3.596 10 O -0.458 6.458 11 N -0.362 5.362 12 C -0.008 4.008 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.021 3.979 16 H 0.046 0.954 17 C -0.560 4.560 18 H 0.075 0.925 19 C -0.139 4.139 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.010 3.990 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.223 0.777 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.904 3.061 -1.297 17.228 hybrid contribution 0.627 -0.340 0.603 0.934 sum -16.277 2.721 -0.694 16.518 Atomic orbital electron populations 1.21778 0.96096 1.01460 1.01534 1.21517 0.95306 0.96737 1.02637 1.21905 0.94562 0.97269 1.02571 1.20820 0.92156 0.93798 0.87645 0.89519 1.21966 0.97643 0.96375 1.01091 1.21751 0.94423 1.00141 1.03797 1.45412 1.17786 1.64609 1.13129 1.15902 0.81108 0.78320 0.84279 1.90916 1.59457 1.62529 1.32859 1.47795 1.16438 1.66264 1.05658 1.21463 0.92961 0.99778 0.86609 1.21941 0.98165 0.99985 0.97030 1.21610 0.93640 0.99042 1.00428 1.19053 0.92852 0.96761 0.89216 0.95379 1.21078 0.97519 1.39888 0.97558 0.92474 1.25040 0.98427 0.95153 0.95328 1.69896 1.35411 1.44329 1.01909 0.86619 0.84263 0.79306 0.77957 1.20670 1.21247 1.19993 1.22229 0.76326 0.95084 1.05373 0.92900 0.92921 0.92912 0.91887 0.91800 0.91740 0.90726 0.91938 0.92468 0.91643 0.92291 0.94187 0.77675 0.92248 0.92339 0.92236 0.92481 0.93167 0.93267 0.92716 0.94512 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.20 5.82 -26.73 -0.16 -1.35 16 3 C -0.13 -1.19 4.75 -26.73 -0.13 -1.32 16 4 C 0.16 2.13 2.26 -67.93 -0.15 1.97 16 5 H 0.09 1.35 7.51 -51.93 -0.39 0.96 16 6 C -0.13 -1.73 5.61 -26.74 -0.15 -1.88 16 7 C -0.14 -2.45 8.58 37.16 0.32 -2.14 16 8 N -0.75 -11.14 4.40 -58.68 -0.26 -11.40 16 9 C 0.70 14.10 6.66 -86.92 -0.58 13.52 16 10 O -0.58 -14.09 13.33 5.29 0.07 -14.02 16 11 N -0.62 -12.60 2.97 -178.23 -0.53 -13.12 16 12 C 0.12 1.81 6.43 -3.71 -0.02 1.78 16 13 C -0.13 -2.14 6.08 -26.61 -0.16 -2.30 16 14 C -0.11 -2.19 5.10 -26.69 -0.14 -2.33 16 15 C 0.04 1.00 2.26 -91.43 -0.21 0.80 16 16 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 17 C -0.52 -14.24 8.56 -34.44 -0.29 -14.54 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -25.79 11.41 55.43 0.63 -25.16 16 21 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.13 3.20 5.41 -3.48 -0.02 3.18 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.36 5.74 -51.93 -0.30 1.06 16 36 H 0.06 1.08 7.92 -51.92 -0.41 0.67 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.39 4.80 6.06 -40.82 -0.25 4.55 16 39 H 0.06 0.73 5.57 -51.93 -0.29 0.44 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.12 3.50 5.18 -51.93 -0.27 3.23 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -30.84 357.76 -9.74 -40.58 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.61 Total: 5.07 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.41 Total: -3.74 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.15 Total: -49.68 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.07 Total: -14.02 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.84 -9.74 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595476060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.377 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds