Wall clock time and date at job start Tue Mar 31 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99795 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99953 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 5 10 10 N 1.46901 * 109.46921 * 179.97438 * 9 7 6 11 11 C 1.46846 * 110.99738 * 66.04780 * 10 9 7 12 12 C 1.53041 * 109.52003 * 174.15981 * 11 10 9 13 13 C 1.53120 * 109.28215 * 59.17728 * 12 11 10 14 14 C 1.53120 * 109.15835 * 302.34563 * 13 12 11 15 15 H 1.08995 * 109.50232 * 297.70964 * 14 13 12 16 16 C 1.50693 * 109.50286 * 177.59101 * 14 13 12 17 17 H 1.07998 * 120.00396 * 240.00023 * 16 14 13 18 18 C 1.37883 * 119.99696 * 60.00300 * 16 14 13 19 19 N 1.31510 * 120.00271 * 359.97438 * 18 16 14 20 20 Si 1.86804 * 119.99941 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47372 * 89.99598 * 20 18 16 22 22 H 1.48500 * 109.46930 * 209.99818 * 20 18 16 23 23 H 1.48501 * 109.46987 * 329.99432 * 20 18 16 24 24 C 1.46839 * 111.00234 * 301.83416 * 10 9 7 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 4 3 2 33 33 H 1.09001 * 109.47066 * 60.00169 * 4 3 2 34 34 H 1.09002 * 109.47153 * 300.00216 * 5 4 3 35 35 H 1.09001 * 109.47289 * 60.00300 * 5 4 3 36 36 H 0.96995 * 120.00194 * 359.97438 * 6 5 4 37 37 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 38 38 H 1.09001 * 109.46927 * 59.99526 * 9 7 6 39 39 H 1.08996 * 109.46077 * 294.17264 * 11 10 9 40 40 H 1.08994 * 109.46671 * 54.14251 * 11 10 9 41 41 H 1.09001 * 109.50321 * 179.12207 * 12 11 10 42 42 H 1.09002 * 109.50319 * 299.23376 * 12 11 10 43 43 H 1.09002 * 109.51647 * 62.24590 * 13 12 11 44 44 H 1.08992 * 109.52456 * 182.37442 * 13 12 11 45 45 H 0.97001 * 120.00312 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.46586 * 305.85726 * 24 10 9 47 47 H 1.09001 * 109.46136 * 65.82255 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 7 5.5449 2.8851 -0.0025 7 6 6.2187 4.0524 -0.0027 8 8 5.6123 5.1026 -0.0024 9 6 7.7258 4.0524 -0.0046 10 7 8.2153 5.4374 -0.0051 11 6 7.8675 6.1189 1.2483 12 6 8.5156 7.5051 1.2736 13 6 8.0191 8.3174 0.0743 14 6 8.3509 7.5625 -1.2159 15 1 9.4320 7.4595 -1.3095 16 6 7.8133 8.3266 -2.3983 17 1 7.0877 7.8675 -3.0534 18 6 8.2477 9.6119 -2.6438 19 7 9.1309 10.1713 -1.8459 20 14 7.5808 10.5594 -4.1091 21 1 6.3679 11.3128 -3.7010 22 1 8.6132 11.5094 -4.5958 23 1 7.2311 9.6092 -5.1954 24 6 7.7076 6.1747 -1.1691 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.9336 0.9286 0.8891 33 1 3.9329 0.9289 -0.8909 34 1 3.7161 3.3987 -0.8913 35 1 3.7170 3.3992 0.8887 36 1 6.0299 2.0451 -0.0024 37 1 8.0902 3.5382 0.8847 38 1 8.0880 3.5390 -0.8953 39 1 6.7847 6.2230 1.3166 40 1 8.2299 5.5331 2.0929 41 1 8.2445 8.0168 2.1970 42 1 9.5993 7.4012 1.2192 43 1 6.9404 8.4546 0.1489 44 1 8.5103 9.2903 0.0648 45 1 9.4363 11.0756 -2.0184 46 1 7.9538 5.6294 -2.0801 47 1 6.6255 6.2785 -1.0894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595608919.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:24 Heat of formation + Delta-G solvation = -60.005003 kcal Electronic energy + Delta-G solvation = -22646.838688 eV Core-core repulsion = 19442.402561 eV Total energy + Delta-G solvation = -3204.436127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01178 -37.59904 -36.49499 -34.45410 -33.52516 -31.77830 -31.04057 -29.70590 -27.45746 -25.51511 -24.81308 -22.53362 -21.75978 -21.50787 -21.24183 -20.14759 -18.60432 -16.72618 -16.39233 -16.31819 -15.85578 -15.25329 -14.77443 -14.41877 -14.24296 -13.95337 -13.91999 -13.80782 -13.28498 -13.00872 -12.67761 -12.26258 -12.05018 -12.00545 -11.94214 -11.59603 -11.47099 -11.38565 -11.22610 -11.10356 -10.89459 -10.84176 -10.55929 -10.47498 -10.07790 -9.90388 -9.67667 -9.33379 -8.95308 -8.89942 -8.57014 -8.18511 -7.39227 -5.86087 -3.90951 2.82737 3.25664 3.38336 3.44220 3.47928 4.42092 4.47335 4.54054 4.62987 4.68107 4.87405 4.92293 5.14176 5.20725 5.32118 5.37373 5.40748 5.43714 5.50997 5.58905 5.63005 5.69956 5.72265 5.82775 5.85936 5.96375 6.00570 6.06756 6.24809 6.40897 6.52167 6.66788 6.73459 6.90435 7.00891 7.20571 7.36602 7.44935 7.58074 7.75337 7.86717 7.91470 8.23564 8.30533 8.44642 8.63246 9.12915 9.72167 11.20026 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.003231 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.248666 B = 8663.386494 C = 9614.806484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.130 4.130 5 C 0.117 3.883 6 N -0.739 5.739 7 C 0.474 3.526 8 O -0.520 6.520 9 C 0.036 3.964 10 N -0.514 5.514 11 C 0.051 3.949 12 C -0.115 4.115 13 C -0.109 4.109 14 C 0.057 3.943 15 H 0.029 0.971 16 C -0.508 4.508 17 H 0.052 0.948 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.047 3.953 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.031 0.969 44 H 0.088 0.912 45 H 0.258 0.742 46 H 0.049 0.951 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.998 -20.537 6.333 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.157 4.157 4 C -0.168 4.168 5 C -0.007 4.007 6 N -0.394 5.394 7 C 0.260 3.740 8 O -0.395 6.395 9 C -0.097 4.097 10 N -0.236 5.236 11 C -0.077 4.077 12 C -0.153 4.153 13 C -0.147 4.147 14 C 0.038 3.962 15 H 0.047 0.953 16 C -0.547 4.547 17 H 0.070 0.930 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.080 4.080 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.050 0.950 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.807 -19.564 6.315 22.777 hybrid contribution -1.062 0.077 -0.738 1.296 sum -10.869 -19.487 5.577 22.999 Atomic orbital electron populations 1.21783 0.95840 1.01566 1.01965 1.21521 0.95938 0.96695 1.01992 1.21540 0.94383 0.97066 1.02686 1.21799 0.96328 0.96061 1.02580 1.21309 0.80514 0.96642 1.02271 1.46334 1.06956 1.09054 1.77049 1.22681 0.92235 0.83458 0.75617 1.90694 1.70528 1.30596 1.47705 1.22383 0.88045 0.95282 1.03973 1.62484 1.56743 0.99756 1.04632 1.22184 0.99494 0.95735 0.90274 1.21644 1.00163 0.94268 0.99197 1.21617 0.98689 1.01029 0.93336 1.18627 0.96151 0.88275 0.93121 0.95278 1.21157 1.24270 0.98854 1.10404 0.92980 1.24933 0.95065 0.97582 0.96381 1.69898 1.31198 1.14434 1.37409 0.86644 0.78576 0.79851 0.83193 1.20833 1.21325 1.20040 1.22646 0.99886 0.96429 0.89011 0.92657 0.92823 0.92707 0.92056 0.92009 0.91570 0.91643 0.91431 0.91353 0.91722 0.91865 0.76995 0.88731 0.88281 0.93225 0.93208 0.93692 0.92441 0.95010 0.89338 0.93207 0.93290 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.12 -0.83 5.21 -26.74 -0.14 -0.96 16 4 C -0.13 -0.93 5.33 -26.74 -0.14 -1.07 16 5 C 0.12 1.23 5.67 -4.04 -0.02 1.21 16 6 N -0.74 -8.16 5.56 -60.29 -0.33 -8.50 16 7 C 0.47 7.29 7.24 -10.98 -0.08 7.21 16 8 O -0.52 -10.52 11.62 5.56 0.06 -10.45 16 9 C 0.04 0.52 5.86 -4.97 -0.03 0.49 16 10 N -0.51 -9.98 4.86 -236.12 -1.15 -11.12 16 11 C 0.05 0.98 5.10 -3.83 -0.02 0.96 16 12 C -0.11 -2.44 6.09 -26.65 -0.16 -2.60 16 13 C -0.11 -2.78 5.02 -26.61 -0.13 -2.91 16 14 C 0.06 1.52 2.26 -91.69 -0.21 1.32 16 15 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 16 C -0.51 -14.75 8.56 -34.44 -0.29 -15.05 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -26.40 11.35 55.43 0.63 -25.77 16 20 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 C 0.05 1.08 4.20 -3.84 -0.02 1.06 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 3.03 8.47 -40.82 -0.35 2.69 16 37 H 0.09 1.09 8.06 -51.93 -0.42 0.67 16 38 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 1.05 6.00 -51.93 -0.31 0.74 16 40 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.09 2.48 6.15 -51.93 -0.32 2.16 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.05 1.11 8.12 -51.93 -0.42 0.69 16 47 H 0.06 1.56 5.36 -51.93 -0.28 1.28 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -32.72 362.51 -10.30 -43.02 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -8.82 Total: 0.33 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.13 Total: -10.13 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -0.85 Total: -45.39 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.06 Total: -10.45 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.72 -10.30 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595608919.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.983 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds