Wall clock time and date at job start Tue Mar 31 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47179 * 2 1 4 4 C 1.52996 * 109.47664 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47281 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47089 * 179.97438 * 5 4 3 7 7 C 1.34775 * 119.99916 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00395 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99897 * 180.02562 * 7 6 5 10 10 N 1.46899 * 109.47173 * 173.73196 * 9 7 6 11 11 C 1.46846 * 110.99816 * 169.39837 * 10 9 7 12 12 C 1.53044 * 109.52021 * 185.84107 * 11 10 9 13 13 C 1.53115 * 109.28027 * 300.82325 * 12 11 10 14 14 C 1.53124 * 109.16047 * 57.65232 * 13 12 11 15 15 H 1.08997 * 109.53264 * 62.30924 * 14 13 12 16 16 C 1.50699 * 109.50343 * 182.40470 * 14 13 12 17 17 H 1.07997 * 120.00310 * 119.80400 * 16 14 13 18 18 C 1.37880 * 119.99957 * 299.80921 * 16 14 13 19 19 N 1.31518 * 120.00137 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99952 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47373 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47522 * 119.99567 * 20 18 16 23 23 H 1.48500 * 109.47019 * 239.99777 * 20 18 16 24 24 C 1.46845 * 111.00320 * 293.61546 * 10 9 7 25 25 H 1.08992 * 109.47509 * 59.99745 * 1 2 3 26 26 H 1.08998 * 109.46886 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47258 * 299.99563 * 1 2 3 28 28 H 1.09001 * 109.47258 * 240.00437 * 2 1 3 29 29 H 1.09001 * 109.47750 * 119.99750 * 2 1 3 30 30 H 1.09001 * 109.46669 * 60.00077 * 3 2 1 31 31 H 1.09001 * 109.47101 * 300.00481 * 3 2 1 32 32 H 1.09002 * 109.47095 * 59.99401 * 4 3 2 33 33 H 1.09001 * 109.47076 * 300.00278 * 4 3 2 34 34 H 1.09006 * 109.47357 * 60.00089 * 5 4 3 35 35 H 1.08992 * 109.47242 * 300.00129 * 5 4 3 36 36 H 0.97004 * 119.99953 * 359.72721 * 6 5 4 37 37 H 1.09001 * 109.47197 * 293.73939 * 9 7 6 38 38 H 1.08997 * 109.46754 * 53.73584 * 9 7 6 39 39 H 1.08996 * 109.46554 * 305.85569 * 11 10 9 40 40 H 1.08995 * 109.45993 * 65.82746 * 11 10 9 41 41 H 1.09003 * 109.49972 * 180.88123 * 12 11 10 42 42 H 1.09001 * 109.53297 * 60.78657 * 12 11 10 43 43 H 1.09002 * 109.52045 * 297.75109 * 13 12 11 44 44 H 1.08998 * 109.57465 * 177.59146 * 13 12 11 45 45 H 0.96997 * 120.00149 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.45566 * 294.17459 * 24 10 9 47 47 H 1.08996 * 109.46665 * 54.13694 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0798 2.8851 0.0000 6 7 5.5449 2.8852 0.0000 7 6 6.2187 4.0524 0.0000 8 8 5.6123 5.1027 0.0005 9 6 7.7257 4.0525 -0.0006 10 7 8.2153 5.4293 -0.1517 11 6 9.6612 5.5035 0.0934 12 6 10.1093 6.9667 0.0712 13 6 9.7715 7.5782 -1.2913 14 6 8.2670 7.4445 -1.5432 15 1 7.7195 8.0034 -0.7843 16 6 7.9349 7.9909 -2.9078 17 1 7.4870 7.3492 -3.6520 18 6 8.2028 9.3101 -3.2062 19 7 8.7479 10.0917 -2.2997 20 14 7.7904 9.9875 -4.8974 21 1 7.1890 8.9132 -5.7278 22 1 6.8244 11.1070 -4.7603 23 1 9.0304 10.4806 -5.5490 24 6 7.8724 5.9676 -1.4742 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9337 0.9287 0.8891 34 1 3.7169 3.3985 0.8905 35 1 3.7161 3.3995 -0.8894 36 1 6.0299 2.0452 0.0036 37 1 8.0895 3.6386 0.9399 38 1 8.0887 3.4449 -0.8295 39 1 9.8874 5.0692 1.0672 40 1 10.1899 4.9499 -0.6826 41 1 11.1852 7.0203 0.2375 42 1 9.5917 7.5182 0.8560 43 1 10.3198 7.0520 -2.0727 44 1 10.0497 8.6321 -1.2977 45 1 8.9361 11.0198 -2.5095 46 1 8.4095 5.4119 -2.2428 47 1 6.7994 5.8703 -1.6389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595608920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:27 Heat of formation + Delta-G solvation = -62.626725 kcal Electronic energy + Delta-G solvation = -22383.099471 eV Core-core repulsion = 19178.549658 eV Total energy + Delta-G solvation = -3204.549814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.64615 -37.76179 -36.55826 -34.37922 -33.60633 -31.77602 -31.02031 -29.75939 -27.53358 -25.53756 -24.86175 -22.54548 -21.80033 -21.46555 -21.23516 -20.01659 -18.54544 -16.70848 -16.40462 -16.28080 -15.81062 -15.28847 -14.77090 -14.51793 -14.18348 -14.01057 -13.82093 -13.58633 -13.26144 -12.96316 -12.68164 -12.43172 -12.22095 -12.20266 -11.95920 -11.60110 -11.50331 -11.43562 -11.22973 -11.07507 -10.88984 -10.85001 -10.61851 -10.56499 -10.04530 -9.80009 -9.50609 -9.34081 -9.01371 -8.84851 -8.55891 -8.20748 -7.61120 -5.87695 -3.92634 2.96509 3.20527 3.36165 3.43674 3.47964 4.43520 4.47754 4.57421 4.62346 4.72761 4.90832 4.94222 5.13140 5.24324 5.35932 5.40616 5.42285 5.44520 5.48835 5.54047 5.62353 5.71921 5.74218 5.75519 5.86021 5.90197 6.00093 6.04290 6.09406 6.29506 6.46015 6.52212 6.67188 6.76355 6.82981 7.12121 7.30457 7.42426 7.60085 7.71793 7.85036 7.88901 8.23245 8.28725 8.54774 8.59580 9.11436 9.70568 11.18719 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018131 B = 0.003213 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.987444 B = 8711.525587 C = 9978.647380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.119 4.119 4 C -0.130 4.130 5 C 0.120 3.880 6 N -0.743 5.743 7 C 0.509 3.491 8 O -0.504 6.504 9 C 0.038 3.962 10 N -0.522 5.522 11 C 0.065 3.935 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.056 3.944 15 H 0.036 0.964 16 C -0.509 4.509 17 H 0.052 0.948 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.066 3.934 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.024 0.976 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.029 0.971 44 H 0.091 0.909 45 H 0.258 0.742 46 H 0.013 0.987 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 -20.754 6.428 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.157 4.157 4 C -0.168 4.168 5 C -0.004 4.004 6 N -0.398 5.398 7 C 0.294 3.706 8 O -0.376 6.376 9 C -0.094 4.094 10 N -0.247 5.247 11 C -0.063 4.063 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.038 3.962 15 H 0.054 0.946 16 C -0.548 4.548 17 H 0.070 0.930 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.060 4.060 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.229 0.771 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.031 0.969 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.949 -19.465 6.795 22.096 hybrid contribution 0.451 -0.602 -1.529 1.703 sum -7.499 -20.066 5.266 22.059 Atomic orbital electron populations 1.21781 0.95855 1.01539 1.01978 1.21522 0.95924 0.96736 1.01968 1.21542 0.94362 0.97034 1.02745 1.21800 0.96326 0.96087 1.02571 1.21294 0.80025 0.96624 1.02442 1.46038 1.06997 1.08711 1.78011 1.20746 0.90268 0.83442 0.76151 1.90760 1.69857 1.30865 1.46114 1.21906 0.91973 0.93332 1.02169 1.61744 1.13749 1.15531 1.33675 1.22052 0.86998 0.98524 0.98727 1.21669 0.98403 0.94156 1.01232 1.21669 0.99188 1.02331 0.91753 1.18630 0.92193 0.88596 0.96815 0.94577 1.21180 1.40038 0.95363 0.98173 0.92963 1.24933 0.95279 0.96953 0.96793 1.69908 1.43541 1.06102 1.33295 0.86583 0.77948 0.78985 0.84729 1.19919 1.21060 1.21173 1.22416 1.00269 0.98731 0.84596 0.92655 0.92860 0.92690 0.92034 0.92072 0.91584 0.91524 0.91373 0.91433 0.91712 0.91604 0.77101 0.88708 0.92978 0.92367 0.95820 0.93416 0.91953 0.95252 0.89088 0.93219 0.96921 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.15 0.37 -0.55 16 2 C -0.12 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.84 5.21 -26.73 -0.14 -0.98 16 4 C -0.13 -0.95 5.33 -26.74 -0.14 -1.09 16 5 C 0.12 1.29 5.67 -4.04 -0.02 1.27 16 6 N -0.74 -8.52 5.56 -60.29 -0.33 -8.85 16 7 C 0.51 8.22 7.36 -10.98 -0.08 8.14 16 8 O -0.50 -10.82 14.71 5.56 0.08 -10.73 16 9 C 0.04 0.57 5.45 -4.97 -0.03 0.54 16 10 N -0.52 -10.30 4.35 -236.12 -1.03 -11.33 16 11 C 0.06 1.15 5.46 -3.83 -0.02 1.13 16 12 C -0.12 -2.36 6.09 -26.65 -0.16 -2.52 16 13 C -0.11 -2.74 5.03 -26.61 -0.13 -2.87 16 14 C 0.06 1.51 2.26 -91.69 -0.21 1.31 16 15 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 16 C -0.51 -14.73 8.56 -34.44 -0.29 -15.03 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -26.37 11.36 55.43 0.63 -25.74 16 20 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.07 1.54 4.34 -3.84 -0.02 1.52 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.40 3.17 8.47 -40.82 -0.35 2.82 16 37 H 0.09 1.14 7.98 -51.93 -0.41 0.73 16 38 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 39 H 0.06 0.87 8.01 -51.93 -0.42 0.46 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 2.49 6.16 -51.93 -0.32 2.17 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 1.78 6.06 -51.93 -0.31 1.47 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -33.20 368.01 -10.22 -43.41 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.96 Total: -1.01 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.13 Total: -8.37 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.73 Total: -45.92 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.20 -10.22 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595608920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.213 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds