Wall clock time and date at job start Tue Mar 31 2020 06:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46840 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99872 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00093 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99944 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47084 * 179.97438 * 8 6 5 10 10 N 1.46901 * 109.46941 * 180.02562 * 9 8 6 11 11 C 1.46847 * 111.00094 * 294.20803 * 10 9 8 12 12 C 1.53031 * 109.52464 * 174.16319 * 11 10 9 13 13 C 1.53115 * 109.27989 * 59.18135 * 12 11 10 14 14 C 1.53125 * 109.16055 * 302.34629 * 13 12 11 15 15 H 1.08998 * 109.50035 * 297.70855 * 14 13 12 16 16 C 1.50702 * 109.50360 * 177.59526 * 14 13 12 17 17 H 1.08004 * 119.99979 * 240.20086 * 16 14 13 18 18 C 1.37880 * 119.99977 * 60.19437 * 16 14 13 19 19 N 1.31510 * 120.00104 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99723 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46999 * 90.00264 * 20 18 16 22 22 H 1.48499 * 109.46928 * 210.00103 * 20 18 16 23 23 H 1.48494 * 109.47107 * 330.00094 * 20 18 16 24 24 C 1.46852 * 110.99899 * 170.00254 * 10 9 8 25 25 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 33 33 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 34 34 H 0.97005 * 120.00448 * 359.97438 * 5 4 3 35 35 H 1.08998 * 109.47224 * 300.00395 * 8 6 5 36 36 H 1.09002 * 109.47152 * 59.99840 * 8 6 5 37 37 H 1.09001 * 109.47375 * 299.99958 * 9 8 6 38 38 H 1.09002 * 109.47045 * 60.00033 * 9 8 6 39 39 H 1.08998 * 109.46358 * 294.18364 * 11 10 9 40 40 H 1.09004 * 109.46239 * 54.14563 * 11 10 9 41 41 H 1.09004 * 109.50778 * 299.23948 * 12 11 10 42 42 H 1.08997 * 109.53664 * 179.14295 * 12 11 10 43 43 H 1.09004 * 109.52875 * 182.44014 * 13 12 11 44 44 H 1.09002 * 109.57420 * 62.28241 * 13 12 11 45 45 H 0.96999 * 120.00233 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.46043 * 305.85642 * 24 10 9 47 47 H 1.09001 * 109.46331 * 65.83299 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 7 4.0584 2.8235 0.0000 6 6 5.3835 3.0697 0.0001 7 8 6.1715 2.1479 0.0001 8 6 5.8859 4.4906 0.0001 9 6 7.4158 4.4905 0.0009 10 7 7.9055 5.8755 0.0016 11 6 7.5516 6.5594 -1.2488 12 6 7.9473 8.0347 -1.1545 13 6 9.4540 8.1389 -0.9028 14 6 9.8032 7.3777 0.3791 15 1 9.2928 7.8371 1.2256 16 6 11.2928 7.4254 0.6026 17 1 11.8626 6.5088 0.6418 18 6 11.9282 8.6393 0.7570 19 7 11.2344 9.7555 0.7097 20 14 13.7745 8.6983 1.0347 21 1 14.4696 8.7821 -0.2749 22 1 14.1142 9.8904 1.8526 23 1 14.2074 7.4695 1.7472 24 6 9.3538 5.9215 0.2403 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 0.8891 33 1 3.9329 0.9286 -0.8908 34 1 3.4281 3.5609 0.0003 35 1 5.5226 5.0044 -0.8898 36 1 5.5225 5.0044 0.8901 37 1 7.7788 3.9768 0.8911 38 1 7.7796 3.9765 -0.8888 39 1 8.0811 6.0938 -2.0799 40 1 6.4769 6.4814 -1.4138 41 1 7.4076 8.5044 -0.3321 42 1 7.6985 8.5392 -2.0881 43 1 9.7332 9.1867 -0.7917 44 1 9.9955 7.7048 -1.7432 45 1 11.6813 10.6094 0.8186 46 1 9.5881 5.3801 1.1569 47 1 9.8749 5.4590 -0.5979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614984.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:42 Heat of formation + Delta-G solvation = -68.195476 kcal Electronic energy + Delta-G solvation = -22032.021741 eV Core-core repulsion = 18827.230449 eV Total energy + Delta-G solvation = -3204.791293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.85309 -38.13721 -36.49632 -34.11679 -33.94656 -32.15375 -30.44499 -29.72725 -28.71107 -24.94080 -24.67180 -23.21899 -21.73736 -21.68454 -21.05404 -19.93609 -18.58533 -17.14550 -16.34711 -16.27105 -16.05158 -15.48534 -14.94274 -14.51344 -14.30380 -14.05191 -13.87504 -13.47406 -13.42904 -12.99642 -12.75937 -12.61923 -12.40758 -12.18576 -11.90396 -11.64790 -11.56950 -11.49723 -11.41862 -11.08102 -10.91220 -10.85617 -10.64058 -10.54208 -10.07531 -9.86005 -9.77481 -9.43134 -9.24991 -8.98881 -8.66589 -8.26715 -7.63532 -5.93947 -3.99624 2.62110 3.01401 3.33699 3.40280 3.44043 4.39066 4.39203 4.48131 4.52483 4.65043 4.91191 4.94011 5.07986 5.15093 5.21568 5.30828 5.34466 5.36348 5.44745 5.57590 5.65565 5.67923 5.74820 5.79775 5.83040 5.86538 6.09330 6.11410 6.18088 6.27296 6.36358 6.46984 6.56690 6.74058 6.79300 7.01443 7.25216 7.33921 7.43375 7.69878 7.79185 7.85518 8.12458 8.16256 8.21095 8.52598 9.04443 9.64424 11.12112 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045777 B = 0.002432 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.512213 B =11508.055391 C =11895.125607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.117 3.883 5 N -0.738 5.738 6 C 0.514 3.486 7 O -0.540 6.540 8 C -0.137 4.137 9 C 0.071 3.929 10 N -0.540 5.540 11 C 0.059 3.941 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.055 3.945 15 H 0.034 0.966 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.068 3.932 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.401 0.599 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.023 0.977 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.090 0.910 44 H 0.029 0.971 45 H 0.259 0.741 46 H 0.060 0.940 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.714 -13.077 -2.900 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.170 4.170 4 C -0.006 4.006 5 N -0.391 5.391 6 C 0.301 3.699 7 O -0.417 6.417 8 C -0.177 4.177 9 C -0.058 4.058 10 N -0.265 5.265 11 C -0.069 4.069 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.036 3.964 15 H 0.053 0.947 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.058 4.058 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.235 0.765 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -20.325 -13.316 -2.496 24.427 hybrid contribution 1.031 -0.009 -0.584 1.184 sum -19.295 -13.325 -3.079 23.650 Atomic orbital electron populations 1.21765 0.95500 1.01811 1.01910 1.21438 0.96100 0.95945 1.02572 1.21835 0.94228 0.98078 1.02830 1.21347 0.93583 0.83347 1.02366 1.46070 1.07422 1.08709 1.76859 1.20907 0.81807 0.92080 0.75081 1.90703 1.55263 1.46805 1.48882 1.21689 0.98551 0.92542 1.04910 1.21736 0.91938 0.90395 1.01704 1.62004 1.16841 1.13185 1.34456 1.22093 0.98568 0.96130 0.90106 1.21669 1.00107 0.93739 0.99954 1.21655 0.90622 1.04445 0.98195 1.18671 0.95026 0.88283 0.94438 0.94739 1.21168 0.92693 0.92393 1.48978 0.92822 1.24933 0.97940 0.95757 0.95254 1.69891 1.35169 0.97363 1.50374 0.86626 0.85949 0.77509 0.78090 1.20820 1.21272 1.19965 1.22305 0.83520 1.01266 0.98740 0.92595 0.92644 0.92679 0.91657 0.91619 0.91207 0.91272 0.91594 0.91663 0.76544 0.88951 0.87989 0.90458 0.94831 0.95889 0.92435 0.92100 0.93609 0.89134 0.95189 0.93112 0.92172 0.96220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.15 0.37 -0.35 16 2 C -0.12 -0.65 5.93 -26.74 -0.16 -0.81 16 3 C -0.13 -0.74 5.33 -26.73 -0.14 -0.88 16 4 C 0.12 0.99 5.67 -4.04 -0.02 0.96 16 5 N -0.74 -6.72 5.56 -60.30 -0.33 -7.06 16 6 C 0.51 6.60 7.83 -10.98 -0.09 6.51 16 7 O -0.54 -9.19 15.98 5.56 0.09 -9.10 16 8 C -0.14 -1.68 5.63 -27.88 -0.16 -1.84 16 9 C 0.07 1.16 4.25 -3.82 -0.02 1.14 16 10 N -0.54 -10.11 4.66 -234.67 -1.09 -11.20 16 11 C 0.06 1.03 5.29 -3.84 -0.02 1.01 16 12 C -0.12 -2.27 6.09 -26.66 -0.16 -2.43 16 13 C -0.11 -2.65 5.03 -26.61 -0.13 -2.78 16 14 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 15 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 16 C -0.51 -14.30 8.56 -34.44 -0.29 -14.59 16 17 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -25.52 11.36 55.43 0.63 -24.89 16 20 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.07 1.51 4.68 -3.83 -0.02 1.49 16 25 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.40 2.51 8.47 -40.82 -0.35 2.16 16 35 H 0.09 1.00 6.43 -51.93 -0.33 0.66 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.08 1.33 7.94 -51.93 -0.41 0.91 16 38 H 0.03 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.83 6.21 -51.93 -0.32 0.51 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.06 1.32 8.01 -51.93 -0.42 0.90 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -31.22 367.84 -10.21 -41.43 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.88 Total: -1.48 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.15 Total: -9.75 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.80 Total: -43.15 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.22 -10.21 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614984.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.770 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds