Wall clock time and date at job start Tue Mar 31 2020 06:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47485 * 179.97438 * 4 3 2 6 6 C 1.34770 * 119.99912 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00222 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00019 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47342 * 180.02562 * 8 6 5 10 10 N 1.46906 * 109.47344 * 180.02562 * 9 8 6 11 11 C 1.46848 * 110.99704 * 45.78580 * 10 9 8 12 12 C 1.53041 * 109.52320 * 185.84236 * 11 10 9 13 13 C 1.53122 * 109.27709 * 300.82672 * 12 11 10 14 14 C 1.53111 * 109.16477 * 57.65078 * 13 12 11 15 15 H 1.09003 * 109.53982 * 62.30416 * 14 13 12 16 16 C 1.50700 * 109.50463 * 182.41043 * 14 13 12 17 17 H 1.07998 * 120.00319 * 119.80538 * 16 14 13 18 18 C 1.37880 * 119.99618 * 299.79679 * 16 14 13 19 19 N 1.31516 * 120.00240 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99863 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47214 * 90.00673 * 20 18 16 22 22 H 1.48508 * 109.47011 * 210.00414 * 20 18 16 23 23 H 1.48503 * 109.47161 * 330.00209 * 20 18 16 24 24 C 1.46844 * 111.00304 * 169.99888 * 10 9 8 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 4 3 2 33 33 H 1.09001 * 109.47066 * 60.00169 * 4 3 2 34 34 H 0.96992 * 119.99570 * 0.02562 * 5 4 3 35 35 H 1.09002 * 109.47210 * 300.00400 * 8 6 5 36 36 H 1.09001 * 109.47122 * 60.00417 * 8 6 5 37 37 H 1.09001 * 109.47230 * 299.99432 * 9 8 6 38 38 H 1.08988 * 109.47529 * 59.99983 * 9 8 6 39 39 H 1.09000 * 109.46861 * 305.85631 * 11 10 9 40 40 H 1.08996 * 109.46450 * 65.82813 * 11 10 9 41 41 H 1.08994 * 109.50749 * 180.88240 * 12 11 10 42 42 H 1.09002 * 109.53325 * 60.77742 * 12 11 10 43 43 H 1.09003 * 109.52033 * 297.74135 * 13 12 11 44 44 H 1.08999 * 109.57323 * 177.58973 * 13 12 11 45 45 H 0.96998 * 120.00143 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.45873 * 294.17571 * 24 10 9 47 47 H 1.08994 * 109.46144 * 54.14904 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 5.3833 3.0701 -0.0014 7 8 6.1714 2.1483 -0.0014 8 6 5.8856 4.4909 -0.0014 9 6 7.4156 4.4910 -0.0022 10 7 7.9053 5.8760 -0.0016 11 6 7.1798 6.6902 0.9818 12 6 7.6123 8.1526 0.8538 13 6 9.1214 8.2561 1.0913 14 6 9.8510 7.3616 0.0854 15 1 9.6501 7.7120 -0.9270 16 6 11.3337 7.4117 0.3504 17 1 11.8684 6.5075 0.6010 18 6 12.0076 8.6121 0.2727 19 7 11.3564 9.7133 -0.0321 20 14 13.8456 8.6742 0.6004 21 1 14.5826 8.4626 -0.6714 22 1 14.2032 10.0004 1.1649 23 1 14.2122 7.6091 1.5682 24 6 9.3537 5.9221 0.2357 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.9336 0.9286 0.8891 33 1 3.9329 0.9289 -0.8909 34 1 3.4279 3.5610 -0.0008 35 1 5.5221 5.0048 -0.8914 36 1 5.5224 5.0048 0.8886 37 1 7.7794 3.9771 0.8876 38 1 7.7785 3.9773 -0.8923 39 1 6.1081 6.6112 0.7992 40 1 7.4042 6.3318 1.9864 41 1 7.0853 8.7542 1.5943 42 1 7.3755 8.5165 -0.1460 43 1 9.3539 7.9296 2.1049 44 1 9.4419 9.2896 0.9591 45 1 11.8305 10.5578 -0.0864 46 1 9.5679 5.5672 1.2439 47 1 9.8608 5.2851 -0.4889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595614986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:47 Heat of formation + Delta-G solvation = -65.008300 kcal Electronic energy + Delta-G solvation = -22069.884913 eV Core-core repulsion = 18865.231827 eV Total energy + Delta-G solvation = -3204.653087 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.89413 -38.18664 -36.50364 -34.16925 -33.95985 -32.11788 -30.51164 -29.69855 -28.66682 -25.00288 -24.68300 -23.28220 -21.74684 -21.72746 -21.07337 -19.82038 -18.58839 -17.21433 -16.35861 -16.27094 -16.06033 -15.50035 -14.97298 -14.52400 -14.28563 -14.05446 -13.97291 -13.45945 -13.37779 -13.07382 -12.76958 -12.56460 -12.43134 -12.19288 -11.91038 -11.63950 -11.57646 -11.49121 -11.34617 -11.08897 -11.01091 -10.91739 -10.63360 -10.51896 -10.11012 -9.87163 -9.72578 -9.42359 -9.26472 -8.99033 -8.66136 -8.26336 -7.61527 -5.93849 -3.99517 2.60095 2.99767 3.33922 3.40314 3.43921 4.38179 4.39290 4.47385 4.52131 4.64223 4.88767 4.93239 5.04906 5.13204 5.19355 5.24748 5.33441 5.36312 5.43940 5.56556 5.62336 5.66371 5.69982 5.79037 5.81666 5.85800 6.06783 6.12955 6.19714 6.26721 6.34121 6.46938 6.56728 6.73681 6.78899 7.01807 7.24860 7.32108 7.43206 7.69785 7.79224 7.85484 8.12548 8.14667 8.21171 8.52688 9.04572 9.64523 11.12219 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049219 B = 0.002439 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.753826 B =11475.724048 C =11901.559044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.117 3.883 5 N -0.737 5.737 6 C 0.514 3.486 7 O -0.539 6.539 8 C -0.143 4.143 9 C 0.071 3.929 10 N -0.539 5.539 11 C 0.055 3.945 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.055 3.945 15 H 0.035 0.965 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.068 3.932 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.022 0.978 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.029 0.971 44 H 0.090 0.910 45 H 0.259 0.741 46 H 0.020 0.980 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.418 -12.867 0.791 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.170 4.170 4 C -0.006 4.006 5 N -0.390 5.390 6 C 0.301 3.699 7 O -0.415 6.415 8 C -0.183 4.183 9 C -0.057 4.057 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.036 3.964 15 H 0.053 0.947 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.059 4.059 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.234 0.766 35 H 0.120 0.880 36 H 0.114 0.886 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.038 0.962 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.883 -13.159 0.306 24.685 hybrid contribution 0.786 0.076 1.023 1.292 sum -20.097 -13.083 1.329 24.017 Atomic orbital electron populations 1.21766 0.95494 1.01818 1.01908 1.21440 0.96104 0.95932 1.02581 1.21833 0.94217 0.98093 1.02825 1.21352 0.93594 0.83312 1.02392 1.46061 1.07393 1.08730 1.76855 1.20883 0.81829 0.92034 0.75149 1.90711 1.55240 1.46762 1.48797 1.21852 0.98702 0.92861 1.04913 1.21789 0.91462 0.90705 1.01751 1.62128 1.06201 1.08321 1.49779 1.22169 0.96994 0.95269 0.92899 1.21676 0.99452 0.93581 1.00798 1.21650 0.90557 1.04487 0.98204 1.18668 0.93711 0.87958 0.96087 0.94736 1.21167 0.93023 0.93803 1.47241 0.92822 1.24934 0.98003 0.95761 0.95187 1.69893 1.35379 0.98680 1.48849 0.86628 0.85897 0.77219 0.78426 1.20714 1.21308 1.20033 1.22311 0.84196 1.01424 0.97929 0.92675 0.92649 0.92588 0.91644 0.91616 0.91222 0.91264 0.91638 0.91575 0.76566 0.87990 0.88624 0.94750 0.90393 0.92044 0.95955 0.93617 0.92086 0.95212 0.89123 0.93112 0.96209 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.65 5.93 -26.73 -0.16 -0.81 16 3 C -0.13 -0.73 5.33 -26.74 -0.14 -0.87 16 4 C 0.12 0.98 5.67 -4.04 -0.02 0.95 16 5 N -0.74 -6.65 5.56 -60.29 -0.33 -6.99 16 6 C 0.51 6.56 7.83 -10.99 -0.09 6.48 16 7 O -0.54 -9.15 15.98 5.55 0.09 -9.06 16 8 C -0.14 -1.74 4.95 -27.89 -0.14 -1.88 16 9 C 0.07 1.16 4.56 -3.82 -0.02 1.15 16 10 N -0.54 -10.13 4.81 -234.67 -1.13 -11.26 16 11 C 0.05 0.94 4.85 -3.83 -0.02 0.92 16 12 C -0.12 -2.26 6.09 -26.65 -0.16 -2.42 16 13 C -0.11 -2.64 5.03 -26.61 -0.13 -2.77 16 14 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 15 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.51 -14.32 8.56 -34.44 -0.29 -14.62 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 19 N -0.89 -25.55 11.36 55.43 0.63 -24.92 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.07 1.51 4.65 -3.83 -0.02 1.49 16 25 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.40 2.45 8.47 -40.82 -0.35 2.11 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 1.03 6.21 -51.93 -0.32 0.71 16 37 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 38 H 0.08 1.33 8.10 -51.94 -0.42 0.91 16 39 H 0.06 0.86 5.81 -51.93 -0.30 0.55 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 2.41 6.16 -51.93 -0.32 2.09 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 1.33 8.12 -51.93 -0.42 0.91 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -31.37 366.74 -10.22 -41.59 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.86 Total: -1.51 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.13 Total: -9.91 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.83 Total: -43.16 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.37 -10.22 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595614986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.417 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds