Wall clock time and date at job start Tue Mar 31 2020 06:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 C 1.50704 * 109.47067 * 239.99737 * 2 1 3 5 5 H 1.08003 * 119.99728 * 239.99629 * 4 2 1 6 6 C 1.37870 * 119.99843 * 60.00403 * 4 2 1 7 7 N 1.31518 * 120.00462 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99879 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47407 * 59.99727 * 8 6 4 10 10 H 1.48506 * 109.47064 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46974 * 299.99310 * 8 6 4 12 12 C 1.53001 * 109.47263 * 119.99743 * 2 1 3 13 13 N 1.46500 * 109.46941 * 300.00256 * 12 2 1 14 14 C 1.34783 * 119.99649 * 179.97438 * 13 12 2 15 15 O 1.21585 * 119.99913 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99768 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99872 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.46840 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 17 16 20 20 C 1.52992 * 109.47482 * 180.02562 * 19 18 17 21 21 C 1.53778 * 113.61727 * 274.13766 * 20 19 18 22 22 C 1.53956 * 87.02468 * 220.04570 * 21 20 19 23 23 C 1.53784 * 113.61658 * 176.52792 * 20 19 18 24 24 H 1.09004 * 109.47342 * 299.99958 * 1 2 3 25 25 H 1.09005 * 109.47348 * 60.00171 * 1 2 3 26 26 H 1.09000 * 109.47332 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46795 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46948 * 299.99700 * 3 2 1 29 29 H 1.08995 * 109.47062 * 59.99595 * 3 2 1 30 30 H 0.96993 * 120.00394 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47355 * 179.97438 * 12 2 1 32 32 H 1.09000 * 109.46906 * 59.99790 * 12 2 1 33 33 H 0.96992 * 120.00454 * 359.97438 * 13 12 2 34 34 H 0.97005 * 119.99680 * 0.02562 * 16 14 13 35 35 H 1.09001 * 109.46813 * 60.00258 * 17 16 14 36 36 H 1.08992 * 109.47397 * 300.00319 * 17 16 14 37 37 H 1.09002 * 109.47398 * 300.00326 * 18 17 16 38 38 H 1.09001 * 109.47194 * 60.00507 * 18 17 16 39 39 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 40 40 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 41 41 H 1.09000 * 112.84915 * 45.33452 * 20 19 18 42 42 H 1.08996 * 113.61184 * 334.56845 * 21 20 19 43 43 H 1.09000 * 113.61578 * 105.46835 * 21 20 19 44 44 H 1.09002 * 113.53647 * 270.81670 * 22 21 20 45 45 H 1.08996 * 113.66740 * 139.92974 * 22 21 20 46 46 H 1.08998 * 113.61407 * 254.52625 * 23 20 19 47 47 H 1.08996 * 113.61156 * 25.35491 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5204 -4.0077 10 1 1.8259 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6696 15 8 2.5759 -1.4798 3.7811 16 7 1.4279 0.1444 4.7700 17 6 1.7810 -0.3567 6.1006 18 6 1.1489 0.5397 7.1673 19 6 1.5181 0.0167 8.5569 20 6 0.8856 0.9127 9.6237 21 6 1.7381 2.1418 9.9804 22 6 1.3326 1.8980 11.4454 23 6 1.1268 0.4231 11.0614 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 0.7082 1.1608 -3.4844 31 1 3.1300 -0.7216 1.2491 32 1 1.6766 -1.7488 1.2493 33 1 0.9942 0.7582 2.3564 34 1 0.8705 0.9333 4.6809 35 1 2.8648 -0.3492 6.2158 36 1 1.4105 -1.3753 6.2153 37 1 1.5199 1.5582 7.0524 38 1 0.0650 0.5326 7.0522 39 1 1.1475 -1.0019 8.6721 40 1 2.6020 0.0241 8.6719 41 1 -0.1569 1.1507 9.4127 42 1 2.8030 2.0037 9.7934 43 1 1.3527 3.0748 9.5692 44 1 0.4124 2.4068 11.7327 45 1 2.1440 2.0551 12.1560 46 1 0.2485 -0.0294 11.5217 47 1 2.0235 -0.1869 11.1703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595649327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:52 Heat of formation + Delta-G solvation = -40.750490 kcal Electronic energy + Delta-G solvation = -21950.776227 eV Core-core repulsion = 18747.175038 eV Total energy + Delta-G solvation = -3203.601189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.61510 -39.21203 -36.59470 -35.34329 -33.25409 -32.44452 -30.69267 -27.63346 -25.94935 -25.69087 -25.49403 -24.72631 -23.14244 -21.52373 -20.47157 -19.69375 -18.73408 -17.95502 -16.15663 -15.92427 -15.76632 -15.61672 -14.91744 -14.70391 -14.65493 -13.87068 -13.67464 -13.37437 -12.97207 -12.83112 -12.77704 -12.69133 -12.21013 -12.13354 -11.76140 -11.54618 -11.34723 -11.16098 -11.04590 -10.86452 -10.81177 -10.70420 -10.45753 -10.35812 -10.34557 -10.18180 -9.72070 -9.59408 -9.27018 -8.91010 -8.76554 -8.38039 -8.13252 -5.99262 -4.09088 3.16204 3.32266 3.36206 3.40604 3.71003 4.23273 4.31143 4.37075 4.41459 4.52079 4.76570 4.82616 4.86751 5.09527 5.27299 5.28624 5.36278 5.41725 5.46127 5.51106 5.54969 5.57500 5.66894 5.79219 5.92096 6.02258 6.07639 6.20462 6.26264 6.40822 6.54460 6.72328 6.84220 6.86290 6.95168 7.06791 7.14963 7.35638 7.46787 7.59214 7.72623 8.04409 8.15742 8.41661 8.54724 8.90648 9.11011 9.56379 11.02134 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.051037 B = 0.002319 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.487849 B =12069.268327 C =12310.610204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.734 5.734 14 C 0.696 3.304 15 O -0.601 6.601 16 N -0.755 5.755 17 C 0.140 3.860 18 C -0.129 4.129 19 C -0.106 4.106 20 C -0.110 4.110 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.139 4.139 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.006 0.994 30 H 0.260 0.740 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.393 0.607 34 H 0.393 0.607 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 4.146 23.086 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.388 5.388 14 C 0.396 3.604 15 O -0.480 6.480 16 N -0.412 5.412 17 C 0.015 3.985 18 C -0.167 4.167 19 C -0.144 4.144 20 C -0.128 4.128 21 C -0.176 4.176 22 C -0.182 4.182 23 C -0.177 4.177 24 H 0.024 0.976 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.228 0.772 34 H 0.226 0.774 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.668 3.322 23.004 23.302 hybrid contribution -0.225 0.305 -0.930 1.004 sum -1.893 3.627 22.074 22.450 Atomic orbital electron populations 1.21816 0.97791 0.99141 0.99971 1.18363 0.92795 0.92780 0.90576 1.21816 0.98572 0.98369 0.99972 1.20951 1.31415 1.12064 0.89874 0.92466 1.24883 0.94911 0.94955 0.98840 1.69795 1.36688 1.22792 1.23271 0.86627 0.79229 0.79787 0.82162 1.20295 1.21371 1.20288 1.21571 0.97853 0.95409 0.82455 1.45502 1.55676 1.33007 1.04632 1.16097 0.80553 0.83020 0.80734 1.90876 1.43179 1.27832 1.86160 1.45143 1.57658 1.33330 1.05085 1.21109 0.99754 0.97456 0.80145 1.21782 1.01123 0.99748 0.94054 1.21478 1.00795 0.99207 0.92965 1.22557 0.99785 0.96241 0.94251 1.23022 1.00183 0.98229 0.96174 1.22847 1.01487 0.96946 0.96959 1.22950 1.01911 0.96483 0.96322 0.97560 0.89664 0.95473 0.95466 0.89673 0.97549 0.92996 0.93010 0.93014 0.77245 0.77414 0.92053 0.92035 0.91324 0.91403 0.91491 0.91511 0.89295 0.90058 0.91624 0.90382 0.91640 0.91673 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.15 0.30 -2.65 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.50 -13.37 8.01 -34.44 -0.28 -13.64 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.77 9.35 55.43 0.52 -23.25 16 8 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 13 N -0.73 -13.58 4.96 -65.22 -0.32 -13.90 16 14 C 0.70 12.86 8.57 -86.91 -0.74 12.12 16 15 O -0.60 -13.58 16.34 5.29 0.09 -13.49 16 16 N -0.76 -10.17 5.56 -65.23 -0.36 -10.54 16 17 C 0.14 1.62 5.67 -4.04 -0.02 1.60 16 18 C -0.13 -1.04 5.33 -26.73 -0.14 -1.18 16 19 C -0.11 -0.77 5.04 -26.74 -0.13 -0.90 16 20 C -0.11 -0.72 3.64 -89.81 -0.33 -1.05 16 21 C -0.14 -0.90 7.65 -25.83 -0.20 -1.09 16 22 C -0.14 -0.87 8.09 -25.82 -0.21 -1.08 16 23 C -0.14 -0.87 7.65 -25.91 -0.20 -1.07 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.39 6.48 6.18 -40.82 -0.25 6.23 16 34 H 0.39 4.19 8.49 -40.82 -0.35 3.84 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.49 7.88 -51.93 -0.41 0.08 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -29.59 367.47 -10.05 -39.64 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.64 Total: 5.57 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.84 Total: -5.44 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.17 Total: -47.69 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.59 -10.05 -39.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595649327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.113 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds