Wall clock time and date at job start Tue Mar 31 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47447 * 2 1 4 4 C 1.52999 * 109.47270 * 120.00275 * 2 1 3 5 5 H 1.09001 * 109.47152 * 318.81444 * 4 2 1 6 6 C 1.50703 * 109.46935 * 198.81804 * 4 2 1 7 7 O 1.21276 * 119.99889 * 278.37247 * 6 4 2 8 8 N 1.34777 * 120.00110 * 98.38337 * 6 4 2 9 9 C 1.46925 * 120.63156 * 355.45279 * 8 6 4 10 10 C 1.53187 * 108.89531 * 126.46388 * 9 8 6 11 11 C 1.53035 * 109.31158 * 54.56738 * 10 9 8 12 12 C 1.53046 * 109.53901 * 298.63312 * 11 10 9 13 13 H 1.09000 * 109.49341 * 301.38367 * 12 11 10 14 14 C 1.50693 * 109.50067 * 181.31973 * 12 11 10 15 15 H 1.08003 * 119.99981 * 267.62431 * 14 12 11 16 16 C 1.37874 * 120.00330 * 87.61981 * 14 12 11 17 17 N 1.31518 * 120.00074 * 185.51815 * 16 14 12 18 18 Si 1.86797 * 119.99953 * 5.51934 * 16 14 12 19 19 H 1.48508 * 109.47013 * 93.08379 * 18 16 14 20 20 H 1.48493 * 109.47446 * 213.08631 * 18 16 14 21 21 H 1.48506 * 109.47181 * 333.08608 * 18 16 14 22 22 C 1.46958 * 120.65384 * 175.27246 * 8 6 4 23 23 N 1.46892 * 109.47470 * 78.81645 * 4 2 1 24 24 C 1.46897 * 111.00148 * 273.15367 * 23 4 2 25 25 C 1.46900 * 111.00219 * 37.10461 * 23 4 2 26 26 H 1.09002 * 109.46794 * 295.54430 * 1 2 3 27 27 H 1.09002 * 109.47040 * 55.54433 * 1 2 3 28 28 H 1.08999 * 109.47361 * 175.54268 * 1 2 3 29 29 H 1.09007 * 109.47024 * 239.99872 * 2 1 3 30 30 H 1.08997 * 109.47022 * 184.95566 * 3 2 1 31 31 H 1.09004 * 109.46653 * 304.95976 * 3 2 1 32 32 H 1.09001 * 109.46920 * 64.95331 * 3 2 1 33 33 H 1.09005 * 109.58587 * 6.60535 * 9 8 6 34 34 H 1.09004 * 109.58619 * 246.32686 * 9 8 6 35 35 H 1.09005 * 109.49654 * 174.51436 * 10 9 8 36 36 H 1.09002 * 109.49857 * 294.61162 * 10 9 8 37 37 H 1.09001 * 109.46398 * 58.65401 * 11 10 9 38 38 H 1.09004 * 109.46265 * 178.63205 * 11 10 9 39 39 H 0.97003 * 119.99667 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.46865 * 113.74994 * 22 8 6 41 41 H 1.08996 * 109.59919 * 353.39412 * 22 8 6 42 42 H 1.09001 * 109.47352 * 84.00305 * 24 23 4 43 43 H 1.09002 * 109.47441 * 204.00446 * 24 23 4 44 44 H 1.09003 * 109.47287 * 324.00472 * 24 23 4 45 45 H 1.09002 * 109.47224 * 59.99924 * 25 23 4 46 46 H 1.08999 * 109.47594 * 180.02562 * 25 23 4 47 47 H 1.09004 * 109.47116 * 300.00716 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.4320 -0.4355 2.1075 6 6 3.4754 -0.3370 1.5002 7 8 4.3664 -0.8880 0.8892 8 7 3.7690 0.6188 2.4039 9 6 2.6984 1.3645 3.0795 10 6 2.9075 1.2698 4.5941 11 6 4.3200 1.7459 4.9407 12 6 5.3474 0.8431 4.2539 13 1 5.2006 -0.1872 4.5781 14 6 6.7379 1.2927 4.6218 15 1 7.2611 1.9985 3.9936 16 6 7.3421 0.8034 5.7603 17 7 8.5092 1.2758 6.1403 18 14 6.5031 -0.5307 6.7632 19 1 6.9830 -1.8627 6.3147 20 1 6.8263 -0.3465 8.2008 21 1 5.0331 -0.4438 6.5711 22 6 5.1659 0.9328 2.7354 23 7 1.9500 -2.1735 1.0472 24 6 0.6230 -2.6765 1.4264 25 6 2.2726 -2.5331 -0.3401 26 1 -0.3633 0.4432 0.9272 27 1 -0.3633 0.5814 -0.8474 28 1 -0.3634 -1.0245 -0.0799 29 1 1.8933 -0.5139 -0.8900 30 1 3.1264 1.4437 -0.0888 31 1 1.6060 1.9813 -0.8423 32 1 1.7510 1.9301 0.9310 33 1 1.7318 0.9348 2.8166 34 1 2.7299 2.4094 2.7709 35 1 2.1767 1.8989 5.1023 36 1 2.7833 0.2354 4.9146 37 1 4.4518 2.7721 4.5979 38 1 4.4632 1.7025 6.0204 39 1 8.9345 0.9312 6.9412 40 1 5.4012 1.9424 2.3984 41 1 5.8274 0.2184 2.2455 42 1 -0.0664 -2.5481 0.5919 43 1 0.6941 -3.7344 1.6795 44 1 0.2565 -2.1204 2.2893 45 1 3.2873 -2.2101 -0.5727 46 1 2.1979 -3.6136 -0.4622 47 1 1.5715 -2.0421 -1.0151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908287.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:08 Heat of formation + Delta-G solvation = -25.409467 kcal Electronic energy + Delta-G solvation = -24490.649775 eV Core-core repulsion = 21287.713823 eV Total energy + Delta-G solvation = -3202.935952 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54809 -38.10674 -36.55234 -34.22206 -33.22636 -31.69866 -30.62508 -28.35401 -27.82568 -27.06022 -25.15392 -24.66747 -22.51881 -21.71725 -20.95761 -19.25177 -18.22279 -17.32343 -16.75135 -16.21064 -15.72245 -15.16222 -14.69853 -14.48879 -14.05340 -13.85013 -13.61097 -13.36637 -12.99726 -12.92283 -12.65756 -12.61634 -12.52701 -12.34336 -12.20883 -12.15265 -11.81519 -11.65587 -11.35426 -11.25880 -11.16067 -11.02362 -10.74333 -10.49206 -10.31660 -10.03316 -9.80925 -9.57223 -9.27287 -8.97316 -8.51638 -8.20531 -7.99482 -6.08107 -4.07472 2.97056 3.30638 3.38744 3.39439 3.42317 4.07337 4.43484 4.54691 4.60252 4.66675 4.96594 5.02771 5.14326 5.20776 5.25907 5.30187 5.35163 5.40137 5.42149 5.49646 5.58222 5.61848 5.61858 5.69885 5.77860 5.87863 5.91716 6.02984 6.09138 6.11949 6.16350 6.18952 6.27402 6.42428 6.62755 6.74654 6.84124 6.91147 6.96563 6.99913 7.30022 7.45836 7.76832 7.94670 8.49716 8.67295 8.96667 9.55327 11.04883 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.005104 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.296065 B = 5484.417742 C = 5703.784647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.153 4.153 4 C 0.065 3.935 5 H 0.099 0.901 6 C 0.528 3.472 7 O -0.538 6.538 8 N -0.608 5.608 9 C 0.109 3.891 10 C -0.141 4.141 11 C -0.111 4.111 12 C 0.006 3.994 13 H 0.034 0.966 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.898 5.898 18 Si 0.874 3.126 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.261 1.261 22 C 0.127 3.873 23 N -0.525 5.525 24 C 0.021 3.979 25 C 0.016 3.984 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.264 0.736 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.063 0.937 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.831 -2.251 -10.101 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.211 4.211 4 C -0.047 4.047 5 H 0.116 0.884 6 C 0.315 3.685 7 O -0.415 6.415 8 N -0.341 5.341 9 C -0.014 4.014 10 C -0.179 4.179 11 C -0.150 4.150 12 C -0.014 4.014 13 H 0.052 0.948 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.127 4.127 17 N -0.536 5.536 18 Si 0.701 3.299 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.185 1.185 22 C 0.006 3.994 23 N -0.248 5.248 24 C -0.127 4.127 25 C -0.131 4.131 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -18.840 -2.794 -9.974 21.500 hybrid contribution -0.982 -0.277 0.336 1.074 sum -19.822 -3.071 -9.639 22.254 Atomic orbital electron populations 1.22038 0.94615 1.02000 1.02163 1.21839 0.96241 0.97456 0.99181 1.21990 1.01803 0.95105 1.02220 1.22040 0.95145 0.88699 0.98816 0.88372 1.20151 0.90290 0.78800 0.79289 1.90614 1.48862 1.53254 1.48746 1.48344 1.08554 1.36803 1.40386 1.21789 0.89968 0.96276 0.93398 1.22051 0.99719 1.01588 0.94544 1.21858 0.92173 1.00154 1.00777 1.19468 0.95539 0.95810 0.90600 0.94812 1.20872 0.97824 1.27119 1.09203 0.90773 1.24997 0.94616 0.96201 0.96936 1.69914 1.16379 1.42467 1.24853 0.86906 0.80855 0.82891 0.79248 1.20361 1.21564 1.18491 1.21870 0.79076 1.00387 0.98062 1.61826 1.28075 1.10624 1.24294 1.22626 0.88847 1.01274 0.99930 1.22666 1.02647 1.00546 0.87248 0.92426 0.92282 0.92310 0.89018 0.91992 0.92443 0.91992 0.90924 0.91539 0.91986 0.92261 0.92626 0.92708 0.92657 0.92407 0.89709 0.94766 0.91285 0.91764 0.89309 0.91800 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.62 37.16 0.32 -0.92 16 2 C -0.13 -1.37 2.16 -90.62 -0.20 -1.57 16 3 C -0.15 -1.68 8.07 37.16 0.30 -1.38 16 4 C 0.06 0.85 1.53 -68.87 -0.11 0.75 16 5 H 0.10 1.17 4.77 -51.93 -0.25 0.92 16 6 C 0.53 9.22 4.98 -10.98 -0.05 9.16 16 7 O -0.54 -11.35 14.44 5.56 0.08 -11.26 16 8 N -0.61 -10.58 2.85 -172.74 -0.49 -11.07 16 9 C 0.11 1.51 4.57 -3.71 -0.02 1.50 16 10 C -0.14 -2.19 6.08 -26.62 -0.16 -2.36 16 11 C -0.11 -2.22 4.88 -26.69 -0.13 -2.35 16 12 C 0.01 0.13 1.78 -91.65 -0.16 -0.04 16 13 H 0.03 0.83 5.56 -51.93 -0.29 0.54 16 14 C -0.51 -14.13 8.86 -34.44 -0.31 -14.44 16 15 H 0.07 2.21 8.06 -52.48 -0.42 1.79 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 18 Si 0.87 21.71 26.52 -169.99 -4.51 17.21 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.26 -6.13 6.11 56.52 0.35 -5.78 16 22 C 0.13 2.66 5.68 -3.69 -0.02 2.63 16 23 N -0.53 -6.96 4.77 -244.59 -1.17 -8.13 16 24 C 0.02 0.21 9.07 60.06 0.54 0.75 16 25 C 0.02 0.20 8.15 60.06 0.49 0.69 16 26 H 0.06 0.44 8.05 -51.93 -0.42 0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.46 5.32 -51.93 -0.28 0.18 16 29 H 0.09 1.06 5.19 -51.93 -0.27 0.79 16 30 H 0.06 0.84 7.07 -51.93 -0.37 0.47 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.63 5.71 -51.93 -0.30 0.34 16 33 H 0.07 0.82 4.85 -51.93 -0.25 0.57 16 34 H 0.07 0.84 7.76 -51.93 -0.40 0.44 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.16 7.17 -51.93 -0.37 0.79 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.96 7.04 -51.93 -0.37 1.60 16 42 H 0.03 0.28 5.73 -51.93 -0.30 -0.01 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.59 7.43 -51.93 -0.39 0.20 16 45 H 0.09 1.32 6.43 -51.93 -0.33 0.99 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.03 0.33 5.80 -51.93 -0.30 0.03 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -31.84 338.16 -7.68 -39.53 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.87 Total: 0.74 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 0.40 Total: -5.52 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.88 Total: -45.79 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.51 Total: 17.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.84 -7.68 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908287.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.118 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds