Wall clock time and date at job start Tue Mar 31 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46972 * 2 1 4 4 C 1.53001 * 109.46691 * 240.00467 * 2 1 3 5 5 H 1.09005 * 109.46861 * 181.50883 * 4 2 1 6 6 C 1.50707 * 109.47027 * 301.50247 * 4 2 1 7 7 O 1.21279 * 119.99862 * 77.74998 * 6 4 2 8 8 N 1.34770 * 119.99771 * 257.74346 * 6 4 2 9 9 C 1.46927 * 120.63739 * 0.02562 * 8 6 4 10 10 C 1.53192 * 108.78040 * 126.36286 * 9 8 6 11 11 C 1.53045 * 109.30920 * 54.63794 * 10 9 8 12 12 C 1.53043 * 109.53567 * 298.63436 * 11 10 9 13 13 H 1.08998 * 109.49923 * 301.38251 * 12 11 10 14 14 C 1.50706 * 109.49474 * 181.31727 * 12 11 10 15 15 H 1.07994 * 119.99824 * 240.00194 * 14 12 11 16 16 C 1.37875 * 119.99780 * 59.99723 * 14 12 11 17 17 N 1.31514 * 120.00295 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99786 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47376 * 90.00574 * 18 16 14 20 20 H 1.48503 * 109.47064 * 210.00331 * 18 16 14 21 21 H 1.48498 * 109.47251 * 330.00062 * 18 16 14 22 22 C 1.46926 * 120.62993 * 179.72041 * 8 6 4 23 23 N 1.46895 * 109.47524 * 61.50240 * 4 2 1 24 24 C 1.46903 * 111.00250 * 152.34367 * 23 4 2 25 25 C 1.46900 * 111.00066 * 276.30078 * 23 4 2 26 26 H 1.09002 * 109.47483 * 287.89447 * 1 2 3 27 27 H 1.09002 * 109.47452 * 167.89727 * 1 2 3 28 28 H 1.08994 * 109.47573 * 47.89837 * 1 2 3 29 29 H 1.08994 * 109.47085 * 120.00599 * 2 1 3 30 30 H 1.09002 * 109.46917 * 60.00258 * 3 2 1 31 31 H 1.09003 * 109.46900 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47480 * 300.00059 * 3 2 1 33 33 H 1.08997 * 109.58641 * 246.15690 * 9 8 6 34 34 H 1.09004 * 109.58147 * 6.43709 * 9 8 6 35 35 H 1.08998 * 109.50146 * 174.58838 * 10 9 8 36 36 H 1.09000 * 109.49519 * 294.69172 * 10 9 8 37 37 H 1.09002 * 109.45895 * 58.65607 * 11 10 9 38 38 H 1.09000 * 109.45626 * 178.62958 * 11 10 9 39 39 H 0.97003 * 120.00370 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.58497 * 353.42471 * 22 8 6 41 41 H 1.08996 * 109.58905 * 113.84683 * 22 8 6 42 42 H 1.08995 * 109.46964 * 63.95248 * 24 23 4 43 43 H 1.08995 * 109.47317 * 183.96181 * 24 23 4 44 44 H 1.09005 * 109.46870 * 303.95953 * 24 23 4 45 45 H 1.08999 * 109.47113 * 46.48150 * 25 23 4 46 46 H 1.09004 * 109.46901 * 166.47630 * 25 23 4 47 47 H 1.08999 * 109.47341 * 286.47354 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 3.1296 -0.7447 -1.2359 6 6 1.5073 -2.1309 -1.2682 7 8 0.3613 -2.3416 -1.6044 8 7 2.3046 -3.1572 -0.9115 9 6 3.6950 -2.9178 -0.5013 10 6 3.9239 -3.5657 0.8678 11 6 3.5345 -5.0442 0.7995 12 6 2.0498 -5.1667 0.4492 13 1 1.4546 -4.6487 1.2012 14 6 1.6598 -6.6220 0.4139 15 1 1.2700 -7.0547 -0.4955 16 6 1.8008 -7.4010 1.5428 17 7 2.2752 -6.8741 2.6504 18 14 1.3182 -9.2051 1.4988 19 1 2.4899 -10.0213 1.0916 20 1 0.8644 -9.6291 2.8478 21 1 0.2163 -9.3991 0.5223 22 6 1.7979 -4.5363 -0.9189 23 7 1.5801 -0.0080 -2.4484 24 6 2.5066 -0.2120 -3.5700 25 6 0.2160 -0.4142 -2.8119 26 1 -0.3634 0.3158 0.9779 27 1 -0.3634 -1.0048 -0.2155 28 1 -0.3634 0.6889 -0.7624 29 1 1.8933 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 4.3726 -3.3589 -1.2322 34 1 3.8768 -1.8450 -0.4352 35 1 4.9757 -3.4787 1.1403 36 1 3.3110 -3.0622 1.6155 37 1 4.1305 -5.5416 0.0343 38 1 3.7194 -5.5133 1.7659 39 1 2.3740 -7.4220 3.4447 40 1 0.7277 -4.5313 -1.1258 41 1 2.3175 -5.1124 -1.6845 42 1 2.5176 -1.2667 -3.8449 43 1 2.1807 0.3826 -4.4234 44 1 3.5092 0.0967 -3.2738 45 1 -0.4125 -0.4145 -1.9213 46 1 -0.1892 0.2862 -3.5422 47 1 0.2374 -1.4155 -3.2419 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:11 Heat of formation + Delta-G solvation = -34.073651 kcal Electronic energy + Delta-G solvation = -24515.056348 eV Core-core repulsion = 21311.744689 eV Total energy + Delta-G solvation = -3203.311659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.97319 -39.26263 -37.52206 -35.49026 -35.01597 -33.13147 -32.11043 -29.40186 -28.69510 -27.38241 -27.00891 -25.93034 -23.71862 -23.21100 -21.95485 -20.94998 -19.63661 -18.67049 -18.11353 -17.34579 -16.98899 -16.52346 -16.10171 -15.41359 -15.20433 -15.04844 -14.87992 -14.69054 -14.45895 -14.19023 -14.11535 -13.87888 -13.72818 -13.56996 -13.03378 -12.88870 -12.81241 -12.76375 -12.60406 -12.40695 -12.26192 -12.01081 -11.89594 -11.88751 -11.63369 -11.56662 -11.29945 -11.15466 -10.85749 -10.63159 -10.43621 -9.50889 -9.14175 -8.12991 -6.28445 1.38554 1.39885 1.49676 1.57513 2.10172 2.41705 2.94731 3.13390 3.51090 3.75722 3.90154 4.11663 4.22424 4.26296 4.30615 4.39458 4.45750 4.51617 4.56206 4.60886 4.70975 4.74794 4.78838 4.82941 4.89115 4.93188 4.94412 4.99511 5.07066 5.09943 5.14842 5.22418 5.27972 5.32647 5.45180 5.49792 5.55980 5.58571 5.61409 5.90496 5.92209 6.01038 6.11710 6.32149 6.56637 6.80868 7.20934 7.39861 8.90572 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.004636 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.761509 B = 6038.750112 C = 6210.295348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.076 4.076 3 C -0.124 4.124 4 C 0.073 3.927 5 H 0.120 0.880 6 C 0.475 3.525 7 O -0.571 6.571 8 N -0.606 5.606 9 C 0.106 3.894 10 C -0.125 4.125 11 C -0.106 4.106 12 C 0.043 3.957 13 H -0.015 1.015 14 C -0.539 4.539 15 H 0.049 0.951 16 C 0.019 3.981 17 N -0.912 5.912 18 Si 0.954 3.046 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.273 1.273 22 C 0.132 3.868 23 N -0.509 5.509 24 C 0.016 3.984 25 C 0.012 3.988 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.262 0.738 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.007 0.993 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.280 16.286 -7.357 18.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.095 4.095 3 C -0.181 4.181 4 C -0.039 4.039 5 H 0.138 0.862 6 C 0.263 3.737 7 O -0.451 6.451 8 N -0.338 5.338 9 C -0.016 4.016 10 C -0.163 4.163 11 C -0.144 4.144 12 C 0.024 3.976 13 H 0.003 0.997 14 C -0.578 4.578 15 H 0.068 0.932 16 C -0.180 4.180 17 N -0.551 5.551 18 Si 0.779 3.221 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.198 1.198 22 C 0.009 3.991 23 N -0.232 5.232 24 C -0.131 4.131 25 C -0.136 4.136 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.081 0.919 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.727 16.643 -7.268 18.766 hybrid contribution -0.629 -2.575 0.080 2.652 sum 4.098 14.067 -7.188 16.320 Atomic orbital electron populations 1.22179 0.95868 1.01852 1.01657 1.20993 0.96109 0.98193 0.94213 1.21621 1.01177 0.92966 1.02373 1.22151 1.01487 0.86111 0.94144 0.86240 1.22378 0.85680 0.88860 0.76773 1.90643 1.19519 1.85901 1.49023 1.48555 1.13718 1.06843 1.64718 1.22051 0.80920 1.02246 0.96378 1.21890 1.01844 0.96219 0.96377 1.21425 0.96451 0.94777 1.01739 1.18760 0.94132 0.93815 0.90877 0.99668 1.21418 1.43159 0.95864 0.97335 0.93247 1.25664 0.94896 1.02466 0.95012 1.70001 1.46013 1.37250 1.01821 0.85621 0.78716 0.80399 0.77320 1.19594 1.20803 1.19820 1.21382 0.97996 0.80916 0.98765 1.62457 1.03219 1.53417 1.04123 1.22619 0.97540 0.98928 0.94060 1.23069 0.90388 0.97489 1.02603 0.92661 0.93978 0.90804 0.91537 0.92331 0.91631 0.91317 0.90232 0.87042 0.89088 0.93567 0.94574 0.91874 0.92880 0.93206 0.92703 0.97379 0.89755 0.89028 0.89309 0.91880 0.96314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 7.46 71.98 0.54 -3.76 16 2 C -0.08 -1.80 2.81 -10.79 -0.03 -1.83 16 3 C -0.12 -2.19 8.99 71.98 0.65 -1.54 16 4 C 0.07 1.83 1.68 44.17 0.07 1.90 16 5 H 0.12 2.41 5.11 -2.38 -0.01 2.40 16 6 C 0.47 16.47 6.03 87.66 0.53 16.99 16 7 O -0.57 -23.62 10.04 -3.03 -0.03 -23.65 16 8 N -0.61 -21.88 2.98 -819.81 -2.44 -24.32 16 9 C 0.11 2.95 6.27 86.36 0.54 3.49 16 10 C -0.13 -4.18 6.08 30.67 0.19 -3.99 16 11 C -0.11 -4.75 4.96 30.62 0.15 -4.60 16 12 C 0.04 2.21 2.24 -11.61 -0.03 2.18 16 13 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 14 C -0.54 -30.20 8.56 25.60 0.22 -29.98 16 15 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 16 C 0.02 1.05 5.30 84.65 0.45 1.50 16 17 N -0.91 -52.29 11.31 21.45 0.24 -52.05 16 18 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 22 C 0.13 5.90 5.63 86.21 0.48 6.39 16 23 N -0.51 -11.97 3.98 -927.71 -3.69 -15.66 16 24 C 0.02 0.32 9.40 127.69 1.20 1.52 16 25 C 0.01 0.33 7.42 127.69 0.95 1.28 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.04 1.45 5.05 -2.39 -0.01 1.44 16 28 H 0.07 1.85 6.31 -2.39 -0.02 1.83 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.25 7.56 -2.39 -0.02 1.23 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 2.27 5.27 -2.38 -0.01 2.26 16 35 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 3.26 6.04 -2.39 -0.01 3.25 16 39 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.05 2.46 7.01 -2.39 -0.02 2.44 16 41 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.01 0.18 8.13 -2.39 -0.02 0.16 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.09 1.34 7.96 -2.38 -0.02 1.32 16 45 H 0.09 2.71 3.19 -2.39 -0.01 2.70 16 46 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 47 H 0.02 0.63 6.17 -2.39 -0.01 0.62 16 Total: -1.00 -65.54 343.54 2.95 -62.59 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.93 Total: 17.68 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 5.91 Total: -10.46 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -5.89 Total: -92.03 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.03 Total: -23.65 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -65.54 2.95 -62.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.513 kcal (2) G-P(sol) polarization free energy of solvation -65.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds