Wall clock time and date at job start Tue Mar 31 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47059 * 2 1 4 4 C 1.53005 * 109.46967 * 119.99638 * 2 1 3 5 5 H 1.08996 * 109.47356 * 60.27684 * 4 2 1 6 6 C 1.50702 * 109.47046 * 300.27866 * 4 2 1 7 7 O 1.21281 * 120.00198 * 279.18184 * 6 4 2 8 8 N 1.34779 * 119.99881 * 99.17780 * 6 4 2 9 9 C 1.46918 * 120.63130 * 352.47340 * 8 6 4 10 10 C 1.53190 * 108.77748 * 233.58327 * 9 8 6 11 11 C 1.53036 * 109.31469 * 305.36752 * 10 9 8 12 12 C 1.53039 * 109.53805 * 61.35733 * 11 10 9 13 13 H 1.09001 * 109.50028 * 58.59507 * 12 11 10 14 14 C 1.50709 * 109.49885 * 178.68564 * 12 11 10 15 15 H 1.07997 * 120.00050 * 120.00131 * 14 12 11 16 16 C 1.37872 * 119.99839 * 300.00419 * 14 12 11 17 17 N 1.31513 * 120.00553 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 120.00041 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47093 * 89.99695 * 18 16 14 20 20 H 1.48497 * 109.47143 * 210.00172 * 18 16 14 21 21 H 1.48500 * 109.46857 * 330.00080 * 18 16 14 22 22 C 1.46923 * 120.63029 * 172.44678 * 8 6 4 23 23 N 1.46896 * 109.47098 * 180.28244 * 4 2 1 24 24 C 1.46903 * 110.99898 * 181.92850 * 23 4 2 25 25 C 1.46902 * 110.99797 * 305.87769 * 23 4 2 26 26 H 1.08998 * 109.47747 * 297.25961 * 1 2 3 27 27 H 1.09003 * 109.47392 * 57.26084 * 1 2 3 28 28 H 1.09001 * 109.47449 * 177.25949 * 1 2 3 29 29 H 1.09001 * 109.47707 * 239.99397 * 2 1 3 30 30 H 1.08999 * 109.47144 * 171.32443 * 3 2 1 31 31 H 1.09000 * 109.46664 * 291.32095 * 3 2 1 32 32 H 1.09001 * 109.47380 * 51.32408 * 3 2 1 33 33 H 1.09001 * 109.58846 * 113.79534 * 9 8 6 34 34 H 1.09007 * 109.70755 * 353.44172 * 9 8 6 35 35 H 1.09003 * 109.50344 * 185.41035 * 10 9 8 36 36 H 1.09002 * 109.52247 * 65.32806 * 10 9 8 37 37 H 1.08995 * 109.46715 * 181.38417 * 11 10 9 38 38 H 1.09001 * 109.46044 * 301.34229 * 11 10 9 39 39 H 0.96995 * 120.00693 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.58688 * 246.20487 * 22 8 6 41 41 H 1.09002 * 109.58688 * 6.62676 * 22 8 6 42 42 H 1.09000 * 109.47466 * 60.39266 * 24 23 4 43 43 H 1.09001 * 109.46922 * 180.39429 * 24 23 4 44 44 H 1.08998 * 109.46740 * 300.38842 * 24 23 4 45 45 H 1.08997 * 109.47585 * 66.60785 * 25 23 4 46 46 H 1.09006 * 109.47378 * 186.60996 * 25 23 4 47 47 H 1.09007 * 109.47215 * 306.60540 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6807 -1.7502 1.2470 6 6 1.5319 -0.0147 2.4797 7 8 2.0925 0.9832 2.8810 8 7 0.4546 -0.4917 3.1342 9 6 -0.3331 -1.5977 2.5730 10 6 -1.8032 -1.1720 2.5065 11 6 -2.2610 -0.7146 3.8933 12 6 -1.4284 0.4910 4.3354 13 1 -1.5411 1.2967 3.6100 14 6 -1.9014 0.9606 5.6870 15 1 -1.2193 0.9710 6.5243 16 6 -3.2050 1.3770 5.8547 17 7 -4.0356 1.3649 4.8352 18 14 -3.7916 1.9585 7.5303 19 1 -3.5703 3.4218 7.6518 20 1 -5.2393 1.6628 7.6779 21 1 -3.0314 1.2529 8.5931 22 6 0.0459 0.0841 4.4227 23 7 3.5089 -0.7153 1.2528 24 6 4.0355 -1.4403 2.4168 25 6 4.0405 -1.2717 0.0014 26 1 -0.3634 0.4707 0.9135 27 1 -0.3634 0.5558 -0.8644 28 1 -0.3634 -1.0265 -0.0491 29 1 1.8934 -0.5139 -0.8899 30 1 3.1189 1.4465 0.1550 31 1 1.8087 1.9095 -0.9574 32 1 1.5556 1.9992 0.8023 33 1 -0.2356 -2.4762 3.2109 34 1 0.0250 -1.8324 1.5706 35 1 -2.4121 -2.0159 2.1823 36 1 -1.9129 -0.3508 1.7981 37 1 -3.3135 -0.4344 3.8543 38 1 -2.1283 -1.5285 4.6062 39 1 -4.9526 1.6581 4.9530 40 1 0.1743 -0.6573 5.2113 41 1 0.6549 0.9615 4.6404 42 1 3.6959 -2.4756 2.3842 43 1 5.1250 -1.4146 2.3985 44 1 3.6763 -0.9687 3.3315 45 1 3.7891 -0.6090 -0.8266 46 1 5.1240 -1.3646 0.0764 47 1 3.6029 -2.2546 -0.1740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:16 Heat of formation + Delta-G solvation = -33.607517 kcal Electronic energy + Delta-G solvation = -24608.346526 eV Core-core repulsion = 21405.055080 eV Total energy + Delta-G solvation = -3203.291446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39553 -37.67289 -36.32573 -34.41798 -33.38727 -31.32093 -30.31230 -27.97778 -27.43824 -26.82962 -25.06097 -24.45436 -22.43635 -21.64055 -21.04416 -19.10053 -17.92368 -17.14976 -16.27958 -16.20241 -15.40825 -14.87374 -14.68559 -14.23422 -14.04894 -13.93953 -13.51811 -13.01044 -12.98334 -12.66142 -12.59726 -12.48078 -12.32224 -12.10354 -11.96405 -11.94379 -11.69793 -11.55825 -10.99623 -10.90153 -10.81412 -10.72913 -10.70089 -10.57947 -10.24590 -9.93888 -9.73745 -9.42520 -9.11498 -8.80411 -8.38112 -8.27617 -7.82913 -6.01105 -4.08084 3.06168 3.30523 3.36871 3.38623 3.45216 4.00480 4.43286 4.68665 4.92018 4.95496 5.07620 5.24249 5.27869 5.29949 5.36948 5.40961 5.44997 5.53925 5.61608 5.66780 5.75667 5.79759 5.87260 5.94600 6.05158 6.10095 6.17858 6.21856 6.33831 6.40971 6.45761 6.49717 6.67620 6.70303 6.80943 6.89488 6.96211 7.03292 7.19386 7.35319 7.69906 7.93671 8.06839 8.08754 8.39177 8.75541 8.95744 9.56813 11.04319 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.004748 C = 0.004556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.635259 B = 5895.975685 C = 6144.456777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.082 4.082 3 C -0.141 4.141 4 C 0.069 3.931 5 H 0.057 0.943 6 C 0.520 3.480 7 O -0.527 6.527 8 N -0.606 5.606 9 C 0.104 3.896 10 C -0.136 4.136 11 C -0.112 4.112 12 C 0.041 3.959 13 H 0.029 0.971 14 C -0.514 4.514 15 H 0.056 0.944 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.118 3.882 23 N -0.522 5.522 24 C 0.024 3.976 25 C 0.024 3.976 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.034 0.966 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.022 0.978 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.358 -8.454 -10.860 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.101 4.101 3 C -0.198 4.198 4 C -0.043 4.043 5 H 0.074 0.926 6 C 0.306 3.694 7 O -0.403 6.403 8 N -0.340 5.340 9 C -0.019 4.019 10 C -0.174 4.174 11 C -0.150 4.150 12 C 0.022 3.978 13 H 0.047 0.953 14 C -0.552 4.552 15 H 0.074 0.926 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.003 4.003 23 N -0.247 5.247 24 C -0.125 4.125 25 C -0.125 4.125 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 10.638 -7.386 -10.628 16.754 hybrid contribution -0.796 -0.730 0.835 1.365 sum 9.842 -8.116 -9.793 16.083 Atomic orbital electron populations 1.22188 0.94406 1.01901 1.03400 1.21107 0.95983 0.97810 0.95222 1.21778 1.02712 0.94358 1.00997 1.21869 0.88543 0.98488 0.95361 0.92577 1.20101 0.80349 0.84863 0.84077 1.90656 1.57997 1.24455 1.67153 1.48322 1.27342 1.35404 1.22901 1.21875 0.92994 0.89136 0.97934 1.22066 0.93555 1.00420 1.01385 1.21620 1.04306 0.97644 0.91397 1.18948 0.87817 0.93882 0.97117 0.95286 1.21082 0.95992 1.43052 0.95090 0.92553 1.24923 0.96770 0.95401 0.96645 1.69866 1.05422 1.47526 1.29966 0.86596 0.77796 0.79168 0.84458 1.20661 1.21278 1.19910 1.21962 0.99176 0.97664 0.81464 1.61698 1.05655 1.54490 1.02814 1.22425 1.00513 0.95430 0.94095 1.22457 1.00064 0.97599 0.92332 0.91038 0.92117 0.92437 0.90668 0.91121 0.93677 0.91864 0.92405 0.90873 0.92636 0.91933 0.88660 0.94707 0.93008 0.92922 0.90365 0.95899 0.91148 0.90940 0.90828 0.91315 0.95742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 7.25 37.16 0.27 -1.84 16 2 C -0.08 -1.05 2.22 -90.62 -0.20 -1.25 16 3 C -0.14 -2.01 8.30 37.16 0.31 -1.70 16 4 C 0.07 0.97 1.26 -68.86 -0.09 0.88 16 5 H 0.06 0.73 6.05 -51.93 -0.31 0.42 16 6 C 0.52 9.40 3.87 -10.98 -0.04 9.36 16 7 O -0.53 -11.41 14.52 5.56 0.08 -11.33 16 8 N -0.61 -11.15 2.68 -172.77 -0.46 -11.61 16 9 C 0.10 1.61 5.06 -3.72 -0.02 1.59 16 10 C -0.14 -2.38 5.91 -26.61 -0.16 -2.54 16 11 C -0.11 -2.48 4.96 -26.69 -0.13 -2.61 16 12 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 13 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 14 C -0.51 -13.90 8.56 -34.44 -0.29 -14.19 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.88 11.31 55.43 0.63 -24.26 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.12 2.56 5.67 -3.71 -0.02 2.54 16 23 N -0.52 -6.92 3.76 -244.58 -0.92 -7.84 16 24 C 0.02 0.29 9.31 60.07 0.56 0.85 16 25 C 0.02 0.23 8.81 60.07 0.53 0.76 16 26 H 0.07 1.17 5.05 -51.93 -0.26 0.91 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.66 6.73 -51.93 -0.35 0.31 16 29 H 0.08 0.80 6.49 -51.93 -0.34 0.46 16 30 H 0.07 1.03 7.19 -51.93 -0.37 0.66 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.10 6.86 -51.93 -0.36 0.74 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.95 3.54 -51.92 -0.18 0.77 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.14 6.35 -51.93 -0.33 0.81 16 37 H 0.10 2.41 6.04 -51.93 -0.31 2.09 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.83 7.00 -51.93 -0.36 1.47 16 42 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 44 H 0.07 1.09 6.92 -51.93 -0.36 0.73 16 45 H 0.07 0.69 6.42 -51.93 -0.33 0.35 16 46 H 0.07 0.59 8.01 -51.93 -0.42 0.17 16 47 H 0.02 0.22 8.12 -51.93 -0.42 -0.20 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -29.62 341.90 -8.19 -37.81 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.06 Total: 1.67 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 0.41 Total: -5.69 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.76 Total: -43.71 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.62 -8.19 -37.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.201 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds