Wall clock time and date at job start Tue Mar 31 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47065 * 2 1 4 4 C 1.53000 * 109.46890 * 120.00212 * 2 1 3 5 5 H 1.09000 * 109.46844 * 293.53731 * 4 2 1 6 6 C 1.50693 * 109.47272 * 53.54031 * 4 2 1 7 7 O 1.21280 * 120.00332 * 89.31339 * 6 4 2 8 8 N 1.34781 * 120.00036 * 269.31026 * 6 4 2 9 9 C 1.46937 * 120.60383 * 357.76592 * 8 6 4 10 10 C 1.53186 * 108.77185 * 233.53471 * 9 8 6 11 11 C 1.53038 * 109.34190 * 305.41120 * 10 9 8 12 12 C 1.53046 * 109.53395 * 61.35150 * 11 10 9 13 13 H 1.08994 * 109.49594 * 58.61888 * 12 11 10 14 14 C 1.50697 * 109.49380 * 178.68371 * 12 11 10 15 15 H 1.07999 * 119.99778 * 120.00262 * 14 12 11 16 16 C 1.37883 * 120.00299 * 299.99684 * 14 12 11 17 17 N 1.31510 * 119.99374 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99998 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46885 * 90.00247 * 18 16 14 20 20 H 1.48500 * 109.46918 * 209.99909 * 18 16 14 21 21 H 1.48496 * 109.47396 * 330.00340 * 18 16 14 22 22 C 1.46927 * 120.63414 * 177.74482 * 8 6 4 23 23 N 1.46905 * 109.46832 * 173.54084 * 4 2 1 24 24 C 1.46901 * 110.99722 * 322.42229 * 23 4 2 25 25 C 1.46897 * 111.00261 * 86.38013 * 23 4 2 26 26 H 1.09002 * 109.47154 * 303.78716 * 1 2 3 27 27 H 1.09002 * 109.47079 * 63.78729 * 1 2 3 28 28 H 1.09005 * 109.47393 * 183.78675 * 1 2 3 29 29 H 1.09001 * 109.47129 * 239.99842 * 2 1 3 30 30 H 1.08999 * 109.47170 * 191.23791 * 3 2 1 31 31 H 1.08999 * 109.47380 * 311.23310 * 3 2 1 32 32 H 1.09004 * 109.46983 * 71.23883 * 3 2 1 33 33 H 1.09002 * 109.55864 * 113.75983 * 9 8 6 34 34 H 1.09003 * 109.61394 * 353.33745 * 9 8 6 35 35 H 1.09003 * 109.49332 * 185.44641 * 10 9 8 36 36 H 1.08997 * 109.50097 * 65.38732 * 10 9 8 37 37 H 1.08999 * 109.46315 * 181.36773 * 11 10 9 38 38 H 1.08995 * 109.46308 * 301.33288 * 11 10 9 39 39 H 0.97002 * 119.99724 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.58157 * 6.65110 * 22 8 6 41 41 H 1.08994 * 109.58999 * 246.22113 * 22 8 6 42 42 H 1.08997 * 109.47049 * 67.09757 * 24 23 4 43 43 H 1.08999 * 109.46849 * 187.09685 * 24 23 4 44 44 H 1.09000 * 109.47589 * 307.09512 * 24 23 4 45 45 H 1.09002 * 109.47285 * 64.99234 * 25 23 4 46 46 H 1.08997 * 109.46966 * 184.99519 * 25 23 4 47 47 H 1.09003 * 109.46800 * 304.99890 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.7741 -0.1450 2.1354 6 6 1.4114 -2.0884 1.3317 7 8 1.9485 -3.0360 0.7984 8 7 0.2523 -2.2581 1.9983 9 6 -0.3847 -1.1294 2.6906 10 6 -0.6434 -1.5270 4.1471 11 6 -1.4539 -2.8247 4.1819 12 6 -0.6560 -3.9446 3.5099 13 1 0.2952 -4.0737 4.0261 14 6 -1.4412 -5.2293 3.5733 15 1 -1.7257 -5.7338 2.6618 16 6 -1.7962 -5.7608 4.7951 17 7 -1.4501 -5.1461 5.9050 18 14 -2.7688 -7.3536 4.8736 19 1 -1.8311 -8.5041 4.9250 20 1 -3.6202 -7.3542 6.0903 21 1 -3.6281 -7.4689 3.6680 22 6 -0.3982 -3.5747 2.0459 23 7 3.5007 -0.8577 1.1738 24 6 3.9332 -1.1341 -0.2026 25 6 4.1692 0.3373 1.7059 26 1 -0.3633 0.5715 0.8541 27 1 -0.3633 0.4539 -0.9220 28 1 -0.3634 -1.0254 0.0679 29 1 1.8933 -0.5139 -0.8900 30 1 3.1114 1.4490 -0.2003 31 1 1.5225 2.0108 -0.7728 32 1 1.8494 1.8952 0.9731 33 1 -1.3300 -0.8892 2.2038 34 1 0.2750 -0.2621 2.6602 35 1 -1.2023 -0.7356 4.6465 36 1 0.3077 -1.6783 4.6575 37 1 -1.6600 -3.0966 5.2171 38 1 -2.3945 -2.6798 3.6506 39 1 -1.7001 -5.5198 6.7645 40 1 0.2529 -4.3205 1.5898 41 1 -1.3447 -3.5343 1.5070 42 1 3.7379 -0.2623 -0.8268 43 1 5.0006 -1.3549 -0.2105 44 1 3.3822 -1.9904 -0.5916 45 1 3.9559 0.4292 2.7708 46 1 5.2453 0.2480 1.5572 47 1 3.8024 1.2213 1.1843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597908290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:20 Heat of formation + Delta-G solvation = -24.675308 kcal Electronic energy + Delta-G solvation = -24411.294770 eV Core-core repulsion = 21208.390654 eV Total energy + Delta-G solvation = -3202.904117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47417 -38.00664 -36.42597 -34.14102 -33.21234 -31.26747 -30.34693 -28.36287 -27.65465 -26.98806 -25.06874 -24.39634 -22.33510 -21.74908 -20.83298 -19.29389 -18.01730 -17.20529 -16.27626 -16.05511 -15.65732 -15.07388 -14.71936 -14.39706 -14.23280 -13.60794 -13.39660 -13.13651 -12.86525 -12.73310 -12.64217 -12.48604 -12.37197 -12.17071 -12.00171 -11.95367 -11.66218 -11.53483 -11.27169 -11.10279 -10.96315 -10.87967 -10.71316 -10.59068 -10.23453 -9.90202 -9.74212 -9.41420 -9.14155 -8.78229 -8.35706 -8.08694 -7.81275 -5.99134 -4.06075 3.08486 3.31866 3.38296 3.40817 3.49176 4.14174 4.45026 4.64366 4.67870 4.76488 5.09645 5.13928 5.18936 5.30537 5.32227 5.38945 5.45353 5.49659 5.59764 5.62661 5.63152 5.65904 5.72997 5.82775 5.83861 5.97423 6.09888 6.12310 6.16328 6.21737 6.36451 6.43452 6.52133 6.69912 6.84442 6.95051 7.05949 7.09011 7.21724 7.37712 7.72111 7.96675 8.09357 8.11159 8.41256 8.77983 8.97914 9.58623 11.06339 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028460 B = 0.004437 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.612331 B = 6308.487382 C = 6497.287625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.152 4.152 4 C 0.067 3.933 5 H 0.099 0.901 6 C 0.524 3.476 7 O -0.539 6.539 8 N -0.602 5.602 9 C 0.108 3.892 10 C -0.137 4.137 11 C -0.111 4.111 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.513 4.513 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.119 3.881 23 N -0.524 5.524 24 C 0.020 3.980 25 C 0.007 3.993 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.035 0.965 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.053 0.947 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.458 15.549 -8.954 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C -0.209 4.209 4 C -0.045 4.045 5 H 0.117 0.883 6 C 0.310 3.690 7 O -0.416 6.416 8 N -0.335 5.335 9 C -0.015 4.015 10 C -0.175 4.175 11 C -0.149 4.149 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.002 4.002 23 N -0.246 5.246 24 C -0.128 4.128 25 C -0.141 4.141 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.877 14.606 -8.743 18.009 hybrid contribution -0.799 -0.108 -0.174 0.825 sum 5.078 14.498 -8.917 17.762 Atomic orbital electron populations 1.22091 0.94284 1.03071 1.01950 1.21720 0.97099 0.96382 0.98784 1.22149 1.01063 0.95552 1.02118 1.21890 0.88808 0.94648 0.99144 0.88336 1.20170 0.80286 0.89952 0.78566 1.90608 1.61579 1.42294 1.47106 1.48296 1.22764 1.11626 1.50834 1.21901 0.97198 0.88322 0.94049 1.22030 1.01305 0.99990 0.94186 1.21615 0.96576 0.91925 1.04802 1.18961 0.96401 0.93645 0.88884 0.95251 1.21083 1.34822 1.06821 0.92452 0.92539 1.24931 0.95943 0.97209 0.95705 1.69874 1.46551 1.38986 0.97374 0.86591 0.80009 0.83927 0.77453 1.20674 1.21288 1.19906 1.21954 0.95597 0.81822 1.00854 1.61784 1.03949 1.36715 1.22176 1.22568 1.01207 1.00904 0.88089 1.22791 0.99320 0.91417 1.00529 0.92035 0.92581 0.91478 0.89791 0.91917 0.92285 0.92297 0.91882 0.91231 0.92599 0.92365 0.88691 0.94654 0.93020 0.90371 0.92892 0.95472 0.91863 0.89703 0.91519 0.91461 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 7.53 37.16 0.28 -1.46 16 2 C -0.12 -1.35 1.99 -90.62 -0.18 -1.53 16 3 C -0.15 -1.32 7.48 37.15 0.28 -1.04 16 4 C 0.07 0.93 1.51 -68.87 -0.10 0.83 16 5 H 0.10 1.28 5.46 -51.93 -0.28 0.99 16 6 C 0.52 9.62 5.78 -10.99 -0.06 9.56 16 7 O -0.54 -11.84 14.35 5.56 0.08 -11.76 16 8 N -0.60 -11.13 2.26 -172.76 -0.39 -11.52 16 9 C 0.11 1.67 4.21 -3.71 -0.02 1.65 16 10 C -0.14 -2.44 6.08 -26.62 -0.16 -2.60 16 11 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 12 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 13 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 14 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.14 11.31 55.43 0.63 -24.51 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.12 2.59 5.66 -3.71 -0.02 2.57 16 23 N -0.52 -7.26 4.70 -244.59 -1.15 -8.41 16 24 C 0.02 0.25 7.95 60.07 0.48 0.73 16 25 C 0.01 0.08 9.17 60.06 0.55 0.63 16 26 H 0.06 0.62 6.55 -51.93 -0.34 0.28 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.91 6.00 -51.93 -0.31 0.60 16 29 H 0.08 1.03 6.00 -51.93 -0.31 0.72 16 30 H 0.06 0.53 4.74 -51.93 -0.25 0.28 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 33 H 0.06 0.89 7.65 -51.93 -0.40 0.50 16 34 H 0.07 0.88 4.59 -51.93 -0.24 0.64 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.08 1.85 7.00 -51.93 -0.36 1.49 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.03 0.29 5.28 -51.93 -0.27 0.01 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.29 6.26 -51.93 -0.33 0.97 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 47 H 0.04 0.38 4.18 -51.93 -0.22 0.16 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -30.34 336.91 -8.26 -38.59 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.79 Total: 1.46 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 0.31 Total: -5.16 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.91 Total: -44.43 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.34 -8.26 -38.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.919 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds