Wall clock time and date at job start Tue Mar 31 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47065 * 2 1 4 4 C 1.53000 * 109.46890 * 120.00212 * 2 1 3 5 5 H 1.09000 * 109.46844 * 293.53731 * 4 2 1 6 6 C 1.50693 * 109.47272 * 53.54031 * 4 2 1 7 7 O 1.21280 * 120.00332 * 89.31339 * 6 4 2 8 8 N 1.34781 * 120.00036 * 269.31026 * 6 4 2 9 9 C 1.46937 * 120.60383 * 357.76592 * 8 6 4 10 10 C 1.53186 * 108.77185 * 233.53471 * 9 8 6 11 11 C 1.53038 * 109.34190 * 305.41120 * 10 9 8 12 12 C 1.53046 * 109.53395 * 61.35150 * 11 10 9 13 13 H 1.08994 * 109.49594 * 58.61888 * 12 11 10 14 14 C 1.50697 * 109.49380 * 178.68371 * 12 11 10 15 15 H 1.07999 * 119.99778 * 120.00262 * 14 12 11 16 16 C 1.37883 * 120.00299 * 299.99684 * 14 12 11 17 17 N 1.31510 * 119.99374 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99998 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46885 * 90.00247 * 18 16 14 20 20 H 1.48500 * 109.46918 * 209.99909 * 18 16 14 21 21 H 1.48496 * 109.47396 * 330.00340 * 18 16 14 22 22 C 1.46927 * 120.63414 * 177.74482 * 8 6 4 23 23 N 1.46905 * 109.46832 * 173.54084 * 4 2 1 24 24 C 1.46901 * 110.99722 * 322.42229 * 23 4 2 25 25 C 1.46897 * 111.00261 * 86.38013 * 23 4 2 26 26 H 1.09002 * 109.47154 * 303.78716 * 1 2 3 27 27 H 1.09002 * 109.47079 * 63.78729 * 1 2 3 28 28 H 1.09005 * 109.47393 * 183.78675 * 1 2 3 29 29 H 1.09001 * 109.47129 * 239.99842 * 2 1 3 30 30 H 1.08999 * 109.47170 * 191.23791 * 3 2 1 31 31 H 1.08999 * 109.47380 * 311.23310 * 3 2 1 32 32 H 1.09004 * 109.46983 * 71.23883 * 3 2 1 33 33 H 1.09002 * 109.55864 * 113.75983 * 9 8 6 34 34 H 1.09003 * 109.61394 * 353.33745 * 9 8 6 35 35 H 1.09003 * 109.49332 * 185.44641 * 10 9 8 36 36 H 1.08997 * 109.50097 * 65.38732 * 10 9 8 37 37 H 1.08999 * 109.46315 * 181.36773 * 11 10 9 38 38 H 1.08995 * 109.46308 * 301.33288 * 11 10 9 39 39 H 0.97002 * 119.99724 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.58157 * 6.65110 * 22 8 6 41 41 H 1.08994 * 109.58999 * 246.22113 * 22 8 6 42 42 H 1.08997 * 109.47049 * 67.09757 * 24 23 4 43 43 H 1.08999 * 109.46849 * 187.09685 * 24 23 4 44 44 H 1.09000 * 109.47589 * 307.09512 * 24 23 4 45 45 H 1.09002 * 109.47285 * 64.99234 * 25 23 4 46 46 H 1.08997 * 109.46966 * 184.99519 * 25 23 4 47 47 H 1.09003 * 109.46800 * 304.99890 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.7741 -0.1450 2.1354 6 6 1.4114 -2.0884 1.3317 7 8 1.9485 -3.0360 0.7984 8 7 0.2523 -2.2581 1.9983 9 6 -0.3847 -1.1294 2.6906 10 6 -0.6434 -1.5270 4.1471 11 6 -1.4539 -2.8247 4.1819 12 6 -0.6560 -3.9446 3.5099 13 1 0.2952 -4.0737 4.0261 14 6 -1.4412 -5.2293 3.5733 15 1 -1.7257 -5.7338 2.6618 16 6 -1.7962 -5.7608 4.7951 17 7 -1.4501 -5.1461 5.9050 18 14 -2.7688 -7.3536 4.8736 19 1 -1.8311 -8.5041 4.9250 20 1 -3.6202 -7.3542 6.0903 21 1 -3.6281 -7.4689 3.6680 22 6 -0.3982 -3.5747 2.0459 23 7 3.5007 -0.8577 1.1738 24 6 3.9332 -1.1341 -0.2026 25 6 4.1692 0.3373 1.7059 26 1 -0.3633 0.5715 0.8541 27 1 -0.3633 0.4539 -0.9220 28 1 -0.3634 -1.0254 0.0679 29 1 1.8933 -0.5139 -0.8900 30 1 3.1114 1.4490 -0.2003 31 1 1.5225 2.0108 -0.7728 32 1 1.8494 1.8952 0.9731 33 1 -1.3300 -0.8892 2.2038 34 1 0.2750 -0.2621 2.6602 35 1 -1.2023 -0.7356 4.6465 36 1 0.3077 -1.6783 4.6575 37 1 -1.6600 -3.0966 5.2171 38 1 -2.3945 -2.6798 3.6506 39 1 -1.7001 -5.5198 6.7645 40 1 0.2529 -4.3205 1.5898 41 1 -1.3447 -3.5343 1.5070 42 1 3.7379 -0.2623 -0.8268 43 1 5.0006 -1.3549 -0.2105 44 1 3.3822 -1.9904 -0.5916 45 1 3.9559 0.4292 2.7708 46 1 5.2453 0.2480 1.5572 47 1 3.8024 1.2213 1.1843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597908290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:19 Heat of formation + Delta-G solvation = -44.259384 kcal Electronic energy + Delta-G solvation = -24412.144000 eV Core-core repulsion = 21208.390654 eV Total energy + Delta-G solvation = -3203.753346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75020 -39.31466 -37.96808 -35.56457 -34.62296 -32.96229 -32.05706 -29.43971 -28.62955 -27.81489 -26.97746 -25.91894 -23.49045 -23.24978 -22.09510 -20.82285 -19.40208 -18.66342 -18.13254 -17.17626 -16.78610 -16.53804 -16.43164 -15.58364 -15.47014 -15.10286 -14.91165 -14.56781 -14.40324 -13.97757 -13.72085 -13.68369 -13.49974 -13.38376 -13.28324 -12.92951 -12.87667 -12.72564 -12.61728 -12.50386 -12.49239 -12.19381 -11.99496 -11.88764 -11.84437 -11.62213 -11.41987 -11.23166 -10.82859 -10.51433 -10.39394 -9.42195 -9.06369 -8.10190 -6.25639 1.40453 1.41726 1.51678 1.70610 2.10170 2.43719 3.11103 3.16089 3.55989 3.70900 3.78616 4.09795 4.22613 4.25557 4.28446 4.35146 4.40071 4.46799 4.56052 4.57930 4.63434 4.72384 4.75058 4.79362 4.81884 4.87723 4.93458 4.95356 4.99156 5.04630 5.11525 5.13806 5.21520 5.30107 5.36084 5.40248 5.49501 5.59617 5.61565 5.94446 5.98496 6.15210 6.17672 6.35281 6.64731 6.84116 7.33636 7.42516 8.93424 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028460 B = 0.004437 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.612331 B = 6308.487382 C = 6497.287625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.146 4.146 4 C 0.078 3.922 5 H 0.115 0.885 6 C 0.514 3.486 7 O -0.586 6.586 8 N -0.605 5.605 9 C 0.111 3.889 10 C -0.130 4.130 11 C -0.104 4.104 12 C 0.042 3.958 13 H -0.019 1.019 14 C -0.538 4.538 15 H 0.051 0.949 16 C 0.017 3.983 17 N -0.913 5.913 18 Si 0.955 3.045 19 H -0.281 1.281 20 H -0.279 1.279 21 H -0.267 1.267 22 C 0.133 3.867 23 N -0.555 5.555 24 C 0.026 3.974 25 C 0.008 3.992 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.061 0.939 38 H 0.039 0.961 39 H 0.261 0.739 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.054 18.557 -9.511 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 C -0.202 4.202 4 C -0.034 4.034 5 H 0.132 0.868 6 C 0.303 3.697 7 O -0.465 6.465 8 N -0.337 5.337 9 C -0.011 4.011 10 C -0.168 4.168 11 C -0.142 4.142 12 C 0.023 3.977 13 H -0.001 1.001 14 C -0.577 4.577 15 H 0.069 0.931 16 C -0.182 4.182 17 N -0.552 5.552 18 Si 0.781 3.219 19 H -0.207 1.207 20 H -0.204 1.204 21 H -0.191 1.191 22 C 0.010 3.990 23 N -0.278 5.278 24 C -0.121 4.121 25 C -0.139 4.139 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.472 17.653 -9.298 20.688 hybrid contribution -0.625 -1.094 0.005 1.260 sum 4.848 16.558 -9.293 19.597 Atomic orbital electron populations 1.22087 0.93967 1.01607 1.03660 1.21687 0.97326 0.97795 0.96628 1.22103 1.01348 0.93263 1.03528 1.21846 0.88974 0.91453 1.01142 0.86769 1.21197 0.79612 0.91600 0.77251 1.90584 1.62700 1.44361 1.48905 1.48351 1.23084 1.10999 1.51259 1.22134 0.98994 0.88066 0.91891 1.21947 1.00008 0.98445 0.96387 1.21401 0.97086 0.93508 1.02213 1.18859 0.94078 0.94270 0.90522 1.00056 1.21444 1.35417 1.08257 0.92546 0.93055 1.25687 0.96845 1.00308 0.95332 1.70014 1.47231 1.40262 0.97739 0.85605 0.78676 0.79823 0.77843 1.20685 1.20424 1.19095 1.21478 0.95520 0.83500 0.98483 1.61694 1.04078 1.39136 1.22913 1.22462 1.00967 1.00583 0.88135 1.22855 0.99589 0.90782 1.00641 0.90240 0.90992 0.94450 0.91244 0.91509 0.90769 0.90915 0.89643 0.87446 0.89057 0.94075 0.92015 0.94235 0.92945 0.93405 0.92090 0.93052 0.91204 0.93061 0.91408 0.90644 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.53 71.98 0.54 -2.44 16 2 C -0.11 -2.27 1.99 -10.80 -0.02 -2.29 16 3 C -0.15 -1.86 7.48 71.98 0.54 -1.32 16 4 C 0.08 2.01 1.51 44.17 0.07 2.08 16 5 H 0.11 2.55 5.46 -2.39 -0.01 2.53 16 6 C 0.51 19.07 5.78 87.65 0.51 19.57 16 7 O -0.59 -27.01 14.35 -3.03 -0.04 -27.05 16 8 N -0.60 -22.38 2.26 -818.89 -1.85 -24.23 16 9 C 0.11 3.13 4.21 86.36 0.36 3.49 16 10 C -0.13 -4.44 6.08 30.67 0.19 -4.25 16 11 C -0.10 -4.73 4.96 30.62 0.15 -4.58 16 12 C 0.04 2.18 2.25 -11.46 -0.03 2.15 16 13 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 14 C -0.54 -30.52 8.56 25.60 0.22 -30.30 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 16 C 0.02 0.98 5.30 84.66 0.45 1.42 16 17 N -0.91 -53.15 11.31 21.45 0.24 -52.91 16 18 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.13 6.04 5.66 86.36 0.49 6.53 16 23 N -0.55 -14.57 4.70 -927.74 -4.36 -18.92 16 24 C 0.03 0.64 7.95 127.69 1.01 1.66 16 25 C 0.01 0.14 9.17 127.69 1.17 1.32 16 26 H 0.08 1.22 6.55 -2.39 -0.02 1.21 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 0.95 6.00 -2.38 -0.01 0.93 16 29 H 0.07 1.60 6.00 -2.39 -0.01 1.59 16 30 H 0.07 0.82 4.74 -2.39 -0.01 0.81 16 31 H 0.07 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.07 0.77 7.87 -2.39 -0.02 0.75 16 33 H 0.09 2.11 7.65 -2.39 -0.02 2.09 16 34 H 0.11 2.27 4.59 -2.39 -0.01 2.26 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 40 H 0.05 2.43 7.00 -2.39 -0.02 2.41 16 41 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.05 0.98 5.28 -2.39 -0.01 0.97 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.05 1.61 6.26 -2.39 -0.01 1.59 16 45 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 47 H 0.07 0.88 4.18 -2.39 -0.01 0.87 16 Total: -1.00 -70.91 336.91 2.62 -68.29 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.95 Total: 15.44 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 5.65 Total: -6.96 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -5.96 Total: -96.06 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.04 Total: -27.05 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -70.91 2.62 -68.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597908290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.033 kcal (2) G-P(sol) polarization free energy of solvation -70.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds