Wall clock time and date at job start Tue Mar 31 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47247 * 2 1 4 4 C 1.53007 * 109.47063 * 119.99541 * 2 1 3 5 5 H 1.09003 * 109.48697 * 60.05447 * 4 2 1 6 6 C 1.53691 * 109.42049 * 180.27881 * 4 2 1 7 7 N 1.47080 * 108.27615 * 173.94955 * 6 4 2 8 8 C 1.34777 * 120.88342 * 128.75498 * 7 6 4 9 9 O 1.21282 * 119.99620 * 359.71783 * 8 7 6 10 10 C 1.50697 * 120.00369 * 179.72391 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47023 * 90.00014 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00457 * 18 16 14 21 21 H 1.48498 * 109.47139 * 330.00202 * 18 16 14 22 22 C 1.47081 * 118.23648 * 308.48466 * 7 6 4 23 23 C 1.53243 * 108.51890 * 51.45642 * 22 7 6 24 24 N 1.46892 * 109.34186 * 306.16999 * 23 22 7 25 25 H 1.09003 * 109.47489 * 60.00509 * 1 2 3 26 26 H 1.08999 * 109.47540 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47481 * 300.00354 * 1 2 3 28 28 H 1.08998 * 109.47133 * 239.99323 * 2 1 3 29 29 H 1.09001 * 109.47322 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46750 * 299.99690 * 3 2 1 31 31 H 1.08998 * 109.47607 * 59.99613 * 3 2 1 32 32 H 1.09003 * 109.79887 * 54.28776 * 6 4 2 33 33 H 1.09002 * 109.70017 * 293.55361 * 6 4 2 34 34 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 35 35 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 36 36 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 37 37 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 38 38 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 39 39 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 40 40 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 41 41 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 42 42 H 0.96996 * 119.99309 * 179.97438 * 17 16 14 43 43 H 1.09007 * 109.62944 * 171.16554 * 22 7 6 44 44 H 1.08997 * 109.62850 * 291.55045 * 22 7 6 45 45 H 1.08994 * 109.49201 * 66.13377 * 23 22 7 46 46 H 1.09005 * 109.48799 * 186.20668 * 23 22 7 47 47 H 1.00898 * 111.00081 * 298.95557 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6775 -1.7492 1.2492 6 6 3.5768 -0.7144 1.2517 7 7 4.0386 -1.2813 2.5279 8 6 4.9475 -2.2761 2.5545 9 8 5.3919 -2.7192 1.5166 10 6 5.4114 -2.8381 3.8736 11 6 6.4357 -3.9468 3.6238 12 6 6.9061 -4.5176 4.9631 13 6 7.9309 -5.6259 4.7133 14 6 8.3948 -6.1878 6.0323 15 1 7.9986 -5.7936 6.9566 16 6 9.3249 -7.2052 6.0595 17 7 9.7301 -7.6953 7.2108 18 14 10.0096 -7.8876 4.4611 19 1 11.2235 -7.1235 4.0764 20 1 10.3627 -9.3183 4.6446 21 1 8.9869 -7.7635 3.3916 22 6 3.4868 -0.7295 3.7747 23 6 1.9577 -0.7317 3.6730 24 7 1.5505 -0.0290 2.4490 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.9417 0.3079 1.1518 33 1 3.9482 -1.3212 0.4259 34 1 4.5579 -3.2465 4.4148 35 1 5.8708 -2.0458 4.4645 36 1 7.2890 -3.5379 3.0828 37 1 5.9765 -4.7391 3.0326 38 1 7.3651 -3.7255 5.5546 39 1 6.0526 -4.9266 5.5036 40 1 7.4722 -6.4182 4.1216 41 1 8.7844 -5.2166 4.1728 42 1 10.3842 -8.4113 7.2298 43 1 3.7986 -1.3462 4.6177 44 1 3.8459 0.2901 3.9143 45 1 1.5969 -1.7596 3.6395 46 1 1.5349 -0.2255 4.5409 47 1 1.8594 0.9314 2.4637 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598577014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:51 Heat of formation + Delta-G solvation = -82.805403 kcal Electronic energy + Delta-G solvation = -22469.366089 eV Core-core repulsion = 19263.941262 eV Total energy + Delta-G solvation = -3205.424827 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46941 -39.47144 -36.71765 -36.42216 -34.63223 -33.99477 -32.16409 -30.89744 -28.30814 -27.96590 -26.87213 -24.84704 -23.83068 -22.92675 -21.75603 -20.49888 -20.06913 -18.88270 -18.06717 -17.09460 -17.02315 -16.64744 -16.31539 -16.06218 -15.88818 -15.19740 -15.00311 -14.75433 -14.64065 -14.47453 -14.00353 -13.81326 -13.76026 -13.58377 -13.40992 -12.93152 -12.88328 -12.74543 -12.55138 -12.33431 -12.21189 -12.12476 -11.77721 -11.75883 -11.60165 -11.50954 -11.44336 -11.38088 -11.28171 -10.84545 -10.77183 -10.23452 -9.08195 -8.30819 -6.33766 1.33461 1.35053 1.47862 1.54986 1.88374 2.34703 3.04462 3.21290 3.50474 3.70923 3.89746 3.96082 3.99635 4.07922 4.08851 4.17378 4.20950 4.35776 4.48187 4.53456 4.59904 4.66104 4.70799 4.76515 4.79980 4.81846 4.87056 4.93444 5.04331 5.08794 5.09902 5.11128 5.17253 5.23751 5.26356 5.41031 5.49558 5.56904 5.57283 5.63015 5.67035 5.97489 6.26456 6.28620 6.46800 6.73948 7.10129 7.31015 8.85676 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038625 B = 0.002654 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.736562 B =10545.808828 C =10942.493024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.150 4.150 4 C 0.092 3.908 5 H 0.065 0.935 6 C 0.074 3.926 7 N -0.615 5.615 8 C 0.510 3.490 9 O -0.588 6.588 10 C -0.128 4.128 11 C -0.097 4.097 12 C -0.092 4.092 13 C -0.017 4.017 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.004 3.996 17 N -0.950 5.950 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.254 1.254 22 C 0.061 3.939 23 C 0.047 3.953 24 N -0.673 5.673 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.266 0.734 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.114 0.886 47 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.830 22.406 -12.277 32.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.105 4.105 3 C -0.207 4.207 4 C -0.020 4.020 5 H 0.083 0.917 6 C -0.050 4.050 7 N -0.349 5.349 8 C 0.300 3.700 9 O -0.468 6.468 10 C -0.167 4.167 11 C -0.135 4.135 12 C -0.130 4.130 13 C -0.055 4.055 14 C -0.568 4.568 15 H 0.056 0.944 16 C -0.193 4.193 17 N -0.590 5.590 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.177 1.177 22 C -0.062 4.062 23 C -0.084 4.084 24 N -0.304 5.304 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.123 0.877 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.133 0.867 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.135 21.770 -12.751 32.912 hybrid contribution 1.744 -0.665 -0.326 1.894 sum -19.391 21.105 -13.077 31.503 Atomic orbital electron populations 1.21650 0.93820 1.01312 1.02178 1.21081 0.97056 0.96731 0.95651 1.21913 1.00667 0.95230 1.02876 1.21877 0.90022 0.98295 0.91779 0.91700 1.22609 0.96815 0.99228 0.86360 1.48307 1.42010 1.36059 1.08490 1.21252 0.78086 0.78756 0.91889 1.90669 1.58077 1.61253 1.36819 1.21688 1.01050 0.99802 0.94188 1.21282 0.97961 0.97120 0.97117 1.21325 0.98216 0.97450 0.95978 1.19576 0.95485 0.95367 0.95030 1.21527 1.23500 1.18342 0.93388 0.94353 1.25986 0.96676 0.96836 0.99794 1.70059 1.33278 1.28454 1.27253 0.85703 0.79418 0.77625 0.80193 1.19224 1.20659 1.17746 1.22835 0.96531 1.00890 0.85947 1.22450 0.91490 1.00477 0.93953 1.60648 1.62577 1.06327 1.00872 0.92532 0.93904 0.91426 0.91399 0.92849 0.91875 0.91337 0.89897 0.91371 0.86777 0.86716 0.93091 0.93233 0.92325 0.92365 0.96892 0.96974 0.92499 0.87654 0.89484 0.91507 0.86750 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.04 71.98 0.65 -0.85 16 2 C -0.09 -1.01 2.80 -10.79 -0.03 -1.04 16 3 C -0.15 -1.33 8.52 71.98 0.61 -0.72 16 4 C 0.09 1.30 2.39 45.15 0.11 1.41 16 5 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 6 C 0.07 1.33 5.66 86.50 0.49 1.82 16 7 N -0.62 -11.95 3.00 -817.03 -2.45 -14.41 16 8 C 0.51 13.83 7.71 87.66 0.68 14.51 16 9 O -0.59 -21.51 15.43 -3.04 -0.05 -21.56 16 10 C -0.13 -3.07 4.07 29.85 0.12 -2.95 16 11 C -0.10 -3.22 4.50 30.59 0.14 -3.09 16 12 C -0.09 -3.56 5.15 30.59 0.16 -3.41 16 13 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 14 C -0.53 -31.33 9.66 25.60 0.25 -31.08 16 15 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 16 C 0.00 0.23 5.47 84.65 0.46 0.69 16 17 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 18 Si 0.95 46.29 27.47 68.60 1.88 48.17 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.25 -11.85 6.54 99.48 0.65 -11.20 16 22 C 0.06 0.70 6.48 86.35 0.56 1.26 16 23 C 0.05 0.45 6.70 86.39 0.58 1.03 16 24 N -0.67 -7.19 5.67 -489.94 -2.78 -9.97 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 0.78 7.61 -2.39 -0.02 0.76 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.51 6.30 -2.39 -0.02 0.49 16 30 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.07 0.49 6.64 -2.39 -0.02 0.48 16 32 H 0.08 1.25 6.17 -2.39 -0.01 1.24 16 33 H 0.07 1.63 7.06 -2.39 -0.02 1.61 16 34 H 0.11 2.24 7.66 -2.39 -0.02 2.23 16 35 H 0.11 2.24 8.00 -2.39 -0.02 2.22 16 36 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 37 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 41 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 42 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 43 H 0.11 1.03 6.02 -2.38 -0.01 1.01 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 47 H 0.35 2.82 6.91 -89.70 -0.62 2.20 16 Total: -1.00 -74.32 359.53 2.05 -72.27 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.25 Total: 8.93 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 4.89 Total: -23.13 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -4.93 Total: -84.69 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.88 Total: 48.17 kcal Total: -74.32 2.05 -72.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598577014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.533 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds