Wall clock time and date at job start Tue Mar 31 2020 06:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47349 * 2 1 4 4 C 1.52997 * 109.47302 * 119.99675 * 2 1 3 5 5 H 1.08998 * 109.51691 * 300.06807 * 4 2 1 6 6 C 1.53242 * 109.49629 * 179.97438 * 4 2 1 7 7 N 1.47080 * 108.52053 * 186.20873 * 6 4 2 8 8 C 1.34777 * 120.88393 * 231.18783 * 7 6 4 9 9 O 1.21288 * 119.99593 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47023 * 90.00014 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00457 * 18 16 14 21 21 H 1.48498 * 109.47139 * 330.00202 * 18 16 14 22 22 C 1.47083 * 118.23602 * 51.46453 * 7 6 4 23 23 C 1.53697 * 108.27375 * 308.47857 * 22 7 6 24 24 N 1.46898 * 109.25750 * 54.08657 * 23 22 7 25 25 H 1.09003 * 109.47032 * 300.00692 * 1 2 3 26 26 H 1.08996 * 109.47136 * 59.99964 * 1 2 3 27 27 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47251 * 240.00013 * 2 1 3 29 29 H 1.08997 * 109.47104 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46466 * 299.99725 * 3 2 1 31 31 H 1.08994 * 109.47420 * 59.99898 * 3 2 1 32 32 H 1.09000 * 109.62497 * 66.50337 * 6 4 2 33 33 H 1.08993 * 109.62991 * 305.92576 * 6 4 2 34 34 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 35 35 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 36 36 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 37 37 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 38 38 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 39 39 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 40 40 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 41 41 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 42 42 H 0.96996 * 119.99309 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.63083 * 68.24728 * 22 7 6 44 44 H 1.09003 * 109.62649 * 188.82850 * 22 7 6 45 45 H 1.09003 * 109.64936 * 294.07921 * 23 22 7 46 46 H 1.09003 * 109.44206 * 173.96527 * 23 22 7 47 47 H 1.00897 * 111.00145 * 60.89900 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6761 -0.2086 2.1397 6 6 3.5724 -0.7220 1.2495 7 7 4.0390 -1.5459 2.3750 8 6 4.9463 -1.0705 3.2509 9 8 5.3888 0.0508 3.1169 10 6 5.4109 -1.9320 4.3967 11 6 6.4322 -1.1597 5.2341 12 6 6.9044 -2.0347 6.3970 13 6 7.9252 -1.2621 7.2348 14 6 8.3898 -2.1236 8.3806 15 1 7.9961 -3.1222 8.4996 16 6 9.3176 -1.6371 9.2770 17 7 9.7227 -2.3888 10.2772 18 14 9.9993 0.0898 9.0707 19 1 9.1452 1.0511 9.8136 20 1 11.3839 0.1425 9.6047 21 1 10.0105 0.4488 7.6298 22 6 3.4937 -2.9047 2.5157 23 6 1.9600 -2.8158 2.4690 24 7 1.5527 -2.1071 1.2484 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.9390 0.2979 1.3656 33 1 3.9384 -1.1412 0.3123 34 1 5.8724 -2.8388 4.0056 35 1 4.5575 -2.1986 5.0201 36 1 5.9703 -0.2531 5.6252 37 1 7.2857 -0.8928 4.6108 38 1 6.0511 -2.3020 7.0204 39 1 7.3664 -2.9409 6.0056 40 1 8.7786 -0.9945 6.6117 41 1 7.4628 -0.3559 7.6262 42 1 10.3757 -2.0466 10.9076 43 1 3.8524 -3.5297 1.6979 44 1 3.8084 -3.3285 3.4694 45 1 1.5975 -2.2737 3.3425 46 1 1.5383 -3.8209 2.4639 47 1 1.8632 -2.5990 0.4240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598577015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:58 Heat of formation + Delta-G solvation = -63.498132 kcal Electronic energy + Delta-G solvation = -22444.631415 eV Core-core repulsion = 19240.043815 eV Total energy + Delta-G solvation = -3204.587601 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -40.58379 -38.51979 -35.76881 -35.07711 -33.45101 -32.60208 -30.88140 -29.85486 -27.80991 -26.63160 -25.49779 -24.01770 -22.60404 -21.56655 -20.58996 -20.05096 -19.10753 -17.21775 -16.57020 -16.18848 -16.02078 -15.80845 -15.26769 -14.94559 -14.39033 -14.22744 -14.03157 -13.90030 -13.58777 -13.35023 -12.91133 -12.66750 -12.45700 -12.43019 -12.31912 -11.98824 -11.77027 -11.75048 -11.65897 -11.18740 -11.15921 -11.12190 -10.91565 -10.73123 -10.54541 -9.97756 -9.82181 -9.65570 -9.51903 -9.40566 -9.12062 -8.49350 -8.43002 -6.00626 -3.98057 2.58892 2.71799 3.35342 3.42296 3.48463 3.70545 4.28547 4.43028 4.48390 4.50113 4.59867 4.69992 4.77371 4.86467 4.94298 5.05918 5.17115 5.25230 5.26215 5.29505 5.34276 5.35884 5.43656 5.50500 5.55073 5.57917 5.66411 5.74836 5.78570 5.98032 6.01169 6.04600 6.11224 6.22270 6.40887 6.54103 6.67165 6.80586 6.90953 6.98375 7.18337 7.37753 7.50602 7.84683 8.10972 8.58206 9.04232 9.62794 11.12853 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033600 B = 0.002728 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.133081 B =10262.094221 C =10832.191940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.152 4.152 4 C 0.080 3.920 5 H 0.086 0.914 6 C 0.076 3.924 7 N -0.622 5.622 8 C 0.516 3.484 9 O -0.536 6.536 10 C -0.137 4.137 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.015 4.015 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C 0.066 3.934 23 C 0.044 3.956 24 N -0.677 5.677 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.614 0.481 -23.336 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.210 4.210 4 C -0.031 4.031 5 H 0.104 0.896 6 C -0.048 4.048 7 N -0.358 5.358 8 C 0.305 3.695 9 O -0.412 6.412 10 C -0.177 4.177 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.058 4.058 23 C -0.087 4.087 24 N -0.306 5.306 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.875 1.252 -22.986 30.413 hybrid contribution 1.421 0.583 -0.141 1.542 sum -18.454 1.835 -23.127 29.644 Atomic orbital electron populations 1.21702 0.94140 1.02550 1.01044 1.21067 0.96885 0.95845 0.96642 1.21911 1.01339 0.95614 1.02162 1.22019 0.91593 0.89875 0.99617 0.89625 1.22397 0.95612 0.98004 0.88779 1.48238 1.43517 1.15434 1.28575 1.21113 0.77701 0.87712 0.82937 1.90689 1.55903 1.20282 1.74304 1.21792 1.01303 0.99431 0.95128 1.21494 0.97338 0.98694 0.96882 1.21471 0.99349 0.98108 0.95023 1.19576 0.94326 0.95977 0.95401 1.21178 1.23806 1.01880 1.08842 0.91112 1.25046 0.96155 0.97484 0.94953 1.69923 1.32377 1.36982 1.15236 0.86771 0.78235 0.85245 0.79037 1.20309 1.21448 1.18916 1.22639 0.96028 0.83488 1.03693 1.22503 0.92162 0.99994 0.93998 1.60640 1.62809 1.02463 1.04692 0.92999 0.93290 0.91450 0.91255 0.92330 0.92329 0.92386 0.88317 0.91930 0.89085 0.89035 0.91809 0.91828 0.92872 0.92858 0.96634 0.97061 0.92818 0.91343 0.88596 0.90200 0.89197 0.84213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.04 37.15 0.34 -0.54 16 2 C -0.08 -0.55 2.65 -90.62 -0.24 -0.79 16 3 C -0.15 -1.04 8.85 37.16 0.33 -0.71 16 4 C 0.08 0.61 2.14 -67.59 -0.14 0.47 16 5 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 6 C 0.08 0.72 5.30 -3.60 -0.02 0.70 16 7 N -0.62 -6.54 3.00 -172.18 -0.52 -7.06 16 8 C 0.52 7.22 7.71 -10.99 -0.08 7.14 16 9 O -0.54 -9.63 15.44 5.55 0.09 -9.54 16 10 C -0.14 -1.78 4.06 -27.89 -0.11 -1.89 16 11 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 12 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 13 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 14 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 15 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 16 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 18 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 22 C 0.07 0.48 6.51 -3.36 -0.02 0.46 16 23 C 0.04 0.28 6.72 -3.46 -0.02 0.25 16 24 N -0.68 -4.44 5.72 -106.19 -0.61 -5.05 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.45 7.61 -51.93 -0.40 0.05 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.43 6.59 -51.93 -0.34 0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.10 1.13 5.73 -51.93 -0.30 0.84 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.03 7.99 -51.93 -0.41 0.62 16 35 H 0.09 1.03 7.67 -51.93 -0.40 0.63 16 36 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.64 6.02 -51.93 -0.31 0.33 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.34 1.87 8.78 -39.29 -0.35 1.52 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -33.64 363.49 -9.01 -42.65 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -8.77 Total: -3.42 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.78 Total: -13.18 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: -0.35 Total: -39.81 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.64 -9.01 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598577015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.845 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds