Wall clock time and date at job start Tue Mar 31 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47349 * 2 1 4 4 C 1.52997 * 109.47302 * 119.99675 * 2 1 3 5 5 H 1.08998 * 109.51691 * 300.06807 * 4 2 1 6 6 C 1.53242 * 109.49629 * 179.97438 * 4 2 1 7 7 N 1.47080 * 108.52053 * 186.20873 * 6 4 2 8 8 C 1.34777 * 120.88393 * 231.18783 * 7 6 4 9 9 O 1.21288 * 119.99593 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00162 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 119.99868 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47023 * 90.00014 * 18 16 14 20 20 H 1.48496 * 109.47251 * 210.00457 * 18 16 14 21 21 H 1.48498 * 109.47139 * 330.00202 * 18 16 14 22 22 C 1.47083 * 118.23602 * 51.46453 * 7 6 4 23 23 C 1.53697 * 108.27375 * 308.47857 * 22 7 6 24 24 N 1.46898 * 109.25750 * 54.08657 * 23 22 7 25 25 H 1.09003 * 109.47032 * 300.00692 * 1 2 3 26 26 H 1.08996 * 109.47136 * 59.99964 * 1 2 3 27 27 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47251 * 240.00013 * 2 1 3 29 29 H 1.08997 * 109.47104 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46466 * 299.99725 * 3 2 1 31 31 H 1.08994 * 109.47420 * 59.99898 * 3 2 1 32 32 H 1.09000 * 109.62497 * 66.50337 * 6 4 2 33 33 H 1.08993 * 109.62991 * 305.92576 * 6 4 2 34 34 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 35 35 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 36 36 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 37 37 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 38 38 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 39 39 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 40 40 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 41 41 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 42 42 H 0.96996 * 119.99309 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.63083 * 68.24728 * 22 7 6 44 44 H 1.09003 * 109.62649 * 188.82850 * 22 7 6 45 45 H 1.09003 * 109.64936 * 294.07921 * 23 22 7 46 46 H 1.09003 * 109.44206 * 173.96527 * 23 22 7 47 47 H 1.00897 * 111.00145 * 60.89900 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6761 -0.2086 2.1397 6 6 3.5724 -0.7220 1.2495 7 7 4.0390 -1.5459 2.3750 8 6 4.9463 -1.0705 3.2509 9 8 5.3888 0.0508 3.1169 10 6 5.4109 -1.9320 4.3967 11 6 6.4322 -1.1597 5.2341 12 6 6.9044 -2.0347 6.3970 13 6 7.9252 -1.2621 7.2348 14 6 8.3898 -2.1236 8.3806 15 1 7.9961 -3.1222 8.4996 16 6 9.3176 -1.6371 9.2770 17 7 9.7227 -2.3888 10.2772 18 14 9.9993 0.0898 9.0707 19 1 9.1452 1.0511 9.8136 20 1 11.3839 0.1425 9.6047 21 1 10.0105 0.4488 7.6298 22 6 3.4937 -2.9047 2.5157 23 6 1.9600 -2.8158 2.4690 24 7 1.5527 -2.1071 1.2484 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6767 1.9564 0.8899 32 1 3.9390 0.2979 1.3656 33 1 3.9384 -1.1412 0.3123 34 1 5.8724 -2.8388 4.0056 35 1 4.5575 -2.1986 5.0201 36 1 5.9703 -0.2531 5.6252 37 1 7.2857 -0.8928 4.6108 38 1 6.0511 -2.3020 7.0204 39 1 7.3664 -2.9409 6.0056 40 1 8.7786 -0.9945 6.6117 41 1 7.4628 -0.3559 7.6262 42 1 10.3757 -2.0466 10.9076 43 1 3.8524 -3.5297 1.6979 44 1 3.8084 -3.3285 3.4694 45 1 1.5975 -2.2737 3.3425 46 1 1.5383 -3.8209 2.4639 47 1 1.8632 -2.5990 0.4240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598577015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:56 Heat of formation + Delta-G solvation = -85.623048 kcal Electronic energy + Delta-G solvation = -22445.590824 eV Core-core repulsion = 19240.043815 eV Total energy + Delta-G solvation = -3205.547009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.44556 -39.38056 -36.71402 -36.45272 -34.63428 -34.16421 -32.16018 -30.95492 -28.54792 -27.81319 -26.55926 -24.83940 -23.75444 -22.68730 -21.75147 -21.17284 -20.01085 -18.88369 -18.10866 -17.12752 -16.99398 -16.42832 -16.31651 -16.02869 -15.81320 -15.23109 -14.99815 -14.72131 -14.64005 -14.54463 -14.06291 -13.77668 -13.71589 -13.58019 -13.44957 -13.01130 -12.89024 -12.82365 -12.43760 -12.33826 -12.24548 -12.11356 -11.77485 -11.76523 -11.70321 -11.51742 -11.47064 -11.37678 -11.28277 -10.84536 -10.77201 -10.25478 -9.09816 -8.30841 -6.33805 1.33555 1.35002 1.47831 1.54823 1.88117 2.34696 3.04454 3.16431 3.50334 3.69042 3.89290 3.96035 4.03054 4.06273 4.08434 4.16998 4.27998 4.34550 4.48869 4.50472 4.59557 4.65568 4.70480 4.75804 4.77831 4.82476 4.85815 4.87480 5.02732 5.05137 5.09825 5.13447 5.17078 5.23447 5.24436 5.43586 5.44577 5.53923 5.57245 5.62965 5.67006 5.96987 6.26176 6.28543 6.46482 6.73923 7.09904 7.30990 8.85665 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033600 B = 0.002728 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.133081 B =10262.094221 C =10832.191940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C -0.152 4.152 4 C 0.091 3.909 5 H 0.064 0.936 6 C 0.075 3.925 7 N -0.616 5.616 8 C 0.510 3.490 9 O -0.587 6.587 10 C -0.128 4.128 11 C -0.097 4.097 12 C -0.092 4.092 13 C -0.017 4.017 14 C -0.530 4.530 15 H 0.038 0.962 16 C 0.004 3.996 17 N -0.950 5.950 18 Si 0.947 3.053 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.253 1.253 22 C 0.061 3.939 23 C 0.048 3.952 24 N -0.675 5.675 25 H 0.041 0.959 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.266 0.734 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.114 0.886 47 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.799 0.137 -25.211 32.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.099 4.099 3 C -0.210 4.210 4 C -0.020 4.020 5 H 0.082 0.918 6 C -0.049 4.049 7 N -0.349 5.349 8 C 0.300 3.700 9 O -0.467 6.467 10 C -0.167 4.167 11 C -0.135 4.135 12 C -0.130 4.130 13 C -0.054 4.054 14 C -0.568 4.568 15 H 0.056 0.944 16 C -0.193 4.193 17 N -0.591 5.591 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.177 1.177 22 C -0.062 4.062 23 C -0.083 4.083 24 N -0.305 5.305 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.106 0.894 44 H 0.123 0.877 45 H 0.084 0.916 46 H 0.132 0.868 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.104 0.863 -24.893 32.646 hybrid contribution 1.734 0.588 0.437 1.882 sum -19.371 1.451 -24.456 31.231 Atomic orbital electron populations 1.21653 0.93782 1.02504 1.01001 1.21039 0.97018 0.95412 0.96436 1.21904 1.00773 0.96101 1.02194 1.21844 0.90119 0.90716 0.99300 0.91817 1.22479 0.96793 0.96737 0.88882 1.48310 1.42165 1.16731 1.27725 1.21250 0.78054 0.87115 0.83552 1.90670 1.58046 1.22342 1.75669 1.21689 1.01074 0.99270 0.94711 1.21282 0.97945 0.98138 0.96108 1.21326 0.98232 0.98037 0.95383 1.19575 0.95541 0.95807 0.94524 1.21528 1.23664 1.01233 1.10341 0.94358 1.25986 0.96650 1.02043 0.94608 1.70059 1.33388 1.39225 1.16378 0.85703 0.77786 0.79796 0.79655 1.19235 1.20656 1.17728 1.22937 0.96536 0.81692 1.05056 1.22526 0.91467 1.00971 0.93305 1.60618 1.62600 1.01865 1.05372 0.93974 0.92421 0.91431 0.89994 0.93193 0.91245 0.93403 0.90816 0.90501 0.86736 0.86778 0.93138 0.93160 0.92353 0.92346 0.96872 0.96988 0.92498 0.89403 0.87651 0.91566 0.86762 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.47 9.04 71.98 0.65 -0.82 16 2 C -0.08 -0.92 2.65 -10.79 -0.03 -0.95 16 3 C -0.15 -2.00 8.85 71.98 0.64 -1.36 16 4 C 0.09 1.30 2.14 44.99 0.10 1.39 16 5 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 6 C 0.08 1.35 5.30 86.35 0.46 1.81 16 7 N -0.62 -11.97 3.00 -817.03 -2.45 -14.42 16 8 C 0.51 13.82 7.71 87.66 0.68 14.49 16 9 O -0.59 -21.39 15.44 -3.05 -0.05 -21.44 16 10 C -0.13 -3.08 4.06 29.85 0.12 -2.96 16 11 C -0.10 -3.22 4.50 30.59 0.14 -3.08 16 12 C -0.09 -3.57 5.15 30.59 0.16 -3.41 16 13 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 14 C -0.53 -31.33 9.66 25.60 0.25 -31.09 16 15 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 16 C 0.00 0.23 5.47 84.65 0.46 0.69 16 17 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 18 Si 0.95 46.27 27.47 68.60 1.88 48.16 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 22 C 0.06 0.69 6.51 86.50 0.56 1.26 16 23 C 0.05 0.47 6.72 86.54 0.58 1.05 16 24 N -0.68 -7.19 5.72 -489.89 -2.80 -10.00 16 25 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 0.76 7.61 -2.39 -0.02 0.74 16 28 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.74 6.59 -2.39 -0.02 0.73 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.07 1.74 5.73 -2.39 -0.01 1.72 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.11 2.24 7.99 -2.39 -0.02 2.22 16 35 H 0.11 2.24 7.67 -2.39 -0.02 2.23 16 36 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 37 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 41 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 42 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.11 1.03 6.02 -2.39 -0.01 1.02 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 47 H 0.35 2.71 8.78 -89.70 -0.79 1.92 16 Total: -1.00 -74.29 363.49 1.84 -72.46 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.08 Total: 9.24 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 4.88 Total: -23.69 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -4.96 Total: -84.73 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.16 kcal Total: -74.29 1.84 -72.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598577015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.165 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds