Wall clock time and date at job start Tue Mar 31 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47003 * 2 1 4 4 C 1.53002 * 109.47041 * 240.00336 * 2 1 3 5 5 C 1.52992 * 109.47412 * 120.00396 * 2 1 3 6 6 N 1.46501 * 109.47405 * 59.99776 * 5 2 1 7 7 C 1.34776 * 120.00148 * 179.97438 * 6 5 2 8 8 O 1.21281 * 119.99853 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00035 * 180.02562 * 7 6 5 10 10 N 1.46495 * 109.47322 * 180.02562 * 9 7 6 11 11 C 1.36939 * 120.00157 * 263.93394 * 10 9 7 12 12 H 1.07998 * 119.99830 * 197.09575 * 11 10 9 13 13 C 1.38810 * 119.99663 * 17.08970 * 11 10 9 14 14 N 1.31612 * 120.00350 * 21.48997 * 13 11 10 15 15 Si 1.86802 * 119.99592 * 201.48670 * 13 11 10 16 16 H 1.48492 * 109.47318 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47033 * 120.00198 * 15 13 11 18 18 H 1.48503 * 109.46979 * 239.99928 * 15 13 11 19 19 C 1.46506 * 119.99890 * 83.92938 * 10 9 7 20 20 C 1.54274 * 110.02974 * 122.09669 * 19 10 9 21 21 C 1.54954 * 104.15965 * 95.75409 * 20 19 10 22 22 C 1.54888 * 102.78124 * 37.88740 * 21 20 19 23 23 C 1.53872 * 110.02992 * 239.30893 * 19 10 9 24 24 H 1.09001 * 109.46691 * 299.99545 * 1 2 3 25 25 H 1.08994 * 109.47406 * 59.99697 * 1 2 3 26 26 H 1.09002 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46953 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47168 * 300.00131 * 3 2 1 29 29 H 1.09001 * 109.47025 * 60.00660 * 3 2 1 30 30 H 1.08997 * 109.46858 * 300.00196 * 4 2 1 31 31 H 1.09007 * 109.46858 * 59.99663 * 4 2 1 32 32 H 1.08994 * 109.47434 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47241 * 299.99722 * 5 2 1 34 34 H 1.09001 * 109.47270 * 179.97438 * 5 2 1 35 35 H 0.97001 * 119.99777 * 0.02562 * 6 5 2 36 36 H 1.09001 * 109.47112 * 59.99830 * 9 7 6 37 37 H 1.09001 * 109.46935 * 300.00244 * 9 7 6 38 38 H 0.97000 * 120.00061 * 180.02562 * 14 13 11 39 39 H 1.08993 * 110.01511 * 0.70886 * 19 10 9 40 40 H 1.09004 * 110.48341 * 214.40544 * 20 19 10 41 41 H 1.09004 * 110.48552 * 337.04145 * 20 19 10 42 42 H 1.09004 * 110.72574 * 279.56861 * 21 20 19 43 43 H 1.09006 * 110.92408 * 156.29351 * 21 20 19 44 44 H 1.09004 * 110.48552 * 203.40497 * 22 21 20 45 45 H 1.09005 * 110.59616 * 80.81583 * 22 21 20 46 46 H 1.08996 * 110.03544 * 359.95474 * 23 19 10 47 47 H 1.08999 * 110.02850 * 121.38942 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2491 6 7 1.5517 -2.1025 1.2491 7 6 1.8778 -2.9326 2.2596 8 8 2.5752 -2.5359 3.1692 9 6 1.3760 -4.3535 2.2593 10 7 1.8643 -5.0442 3.4554 11 6 2.9966 -5.8114 3.3888 12 1 3.2078 -6.5309 4.1660 13 6 3.8727 -5.6644 2.3222 14 7 3.8720 -4.5523 1.6184 15 14 5.0528 -7.0452 1.8859 16 1 4.8562 -8.1794 2.8240 17 1 4.7907 -7.4999 0.4968 18 1 6.4502 -6.5535 1.9904 19 6 1.1412 -4.9139 4.7230 20 6 0.7151 -6.3059 5.2337 21 6 1.8353 -6.7044 6.2273 22 6 2.1680 -5.3621 6.9249 23 6 2.0651 -4.3142 5.7975 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6766 -1.7488 -1.2493 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7208 -1.2496 33 1 1.6768 -0.2075 2.1392 34 1 3.1301 -0.7217 1.2489 35 1 0.9943 -2.4199 0.5214 36 1 1.7393 -4.8670 1.3691 37 1 0.2860 -4.3539 2.2595 38 1 4.4841 -4.4498 0.8729 39 1 0.2642 -4.2808 4.5888 40 1 -0.2455 -6.2467 5.7455 41 1 0.6655 -7.0163 4.4084 42 1 2.7050 -7.0887 5.6942 43 1 1.4728 -7.4357 6.9498 44 1 3.1783 -5.3847 7.3336 45 1 1.4440 -5.1489 7.7113 46 1 3.0515 -4.1208 5.3762 47 1 1.6363 -3.3900 6.1849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599297866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:52 Heat of formation + Delta-G solvation = -31.621559 kcal Electronic energy + Delta-G solvation = -24062.829690 eV Core-core repulsion = 20859.624361 eV Total energy + Delta-G solvation = -3203.205329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.76125 -37.75785 -36.58446 -33.80339 -32.35849 -30.80902 -27.79834 -27.64927 -27.23288 -27.13289 -26.48832 -24.92848 -22.33001 -19.85211 -19.30886 -18.93177 -18.74693 -16.54799 -15.78778 -15.47496 -14.94557 -14.68432 -14.48834 -14.04385 -13.80601 -13.57052 -13.47147 -12.97505 -12.84592 -12.59075 -12.24850 -12.13063 -11.99814 -11.58435 -11.55052 -11.19958 -10.97409 -10.75561 -10.67188 -10.62278 -10.55850 -10.40769 -10.30419 -10.23229 -10.17447 -10.02164 -9.83900 -9.54499 -9.39933 -8.64700 -8.15095 -7.88000 -6.70074 -5.71001 -3.01964 3.41536 3.50726 3.51965 4.26897 4.41994 4.62708 4.89736 4.95653 5.04998 5.39235 5.40469 5.54060 5.58061 5.64574 5.65924 5.69088 5.82265 5.85163 5.92892 5.97183 6.04224 6.18784 6.21395 6.23696 6.34732 6.36087 6.39220 6.41025 6.49354 6.54405 6.54942 6.64438 6.68013 6.74364 6.86569 6.96516 6.98441 7.16641 7.27143 7.54797 7.62432 7.97268 8.41340 8.77316 9.27018 9.82978 9.99354 10.40699 11.38298 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.005667 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.787217 B = 4939.579374 C = 6046.039343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.138 4.138 5 C 0.141 3.859 6 N -0.749 5.749 7 C 0.524 3.476 8 O -0.528 6.528 9 C 0.163 3.837 10 N -0.564 5.564 11 C -0.239 4.239 12 H 0.082 0.918 13 C -0.004 4.004 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.295 1.295 19 C 0.175 3.825 20 C -0.131 4.131 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.127 4.127 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.384 0.616 36 H 0.100 0.900 37 H 0.032 0.968 38 H 0.249 0.751 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.085 0.915 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 5.736 -2.410 10.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.082 4.082 3 C -0.195 4.195 4 C -0.195 4.195 5 C 0.016 3.984 6 N -0.405 5.405 7 C 0.310 3.690 8 O -0.402 6.402 9 C 0.032 3.968 10 N -0.282 5.282 11 C -0.368 4.368 12 H 0.100 0.900 13 C -0.201 4.201 14 N -0.541 5.541 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.222 1.222 19 C 0.067 3.933 20 C -0.171 4.171 21 C -0.158 4.158 22 C -0.159 4.159 23 C -0.166 4.166 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.118 0.882 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.559 6.020 -1.825 9.834 hybrid contribution 0.748 -0.564 -0.749 1.199 sum -6.811 5.456 -2.573 9.099 Atomic orbital electron populations 1.21847 0.94578 1.01877 1.01270 1.20797 0.95799 0.95660 0.95949 1.21796 1.01209 0.95063 1.01468 1.21832 1.01381 1.00287 0.96042 1.21037 0.98700 0.83389 0.95285 1.46262 1.56061 1.11304 1.26918 1.22060 0.79056 0.87604 0.80233 1.90500 1.36073 1.76478 1.37103 1.20579 0.93443 0.89452 0.93330 1.44013 1.27789 1.53513 1.02926 1.19335 0.98735 1.11557 1.07175 0.90041 1.24804 0.97839 0.96567 1.00900 1.69952 1.39441 1.22466 1.22218 0.86298 0.80708 0.82344 0.77933 1.20485 1.21920 1.22246 1.20918 0.92958 0.92882 0.86527 1.22782 0.96364 0.99477 0.98460 1.22531 0.99546 0.96270 0.97451 1.22302 0.99652 0.96322 0.97612 1.22581 1.02960 0.95955 0.95136 0.92751 0.93013 0.92430 0.92513 0.92725 0.92663 0.92259 0.93195 0.92503 0.93264 0.92605 0.78328 0.88233 0.95055 0.94061 0.93565 0.93419 0.91238 0.90716 0.93634 0.93029 0.93384 0.89599 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.30 37.16 0.31 -1.23 16 2 C -0.08 -1.03 0.78 -154.51 -0.12 -1.15 16 3 C -0.14 -1.52 8.47 37.16 0.31 -1.21 16 4 C -0.14 -1.72 8.30 37.16 0.31 -1.41 16 5 C 0.14 2.38 4.56 -4.04 -0.02 2.36 16 6 N -0.75 -13.81 4.96 -60.30 -0.30 -14.11 16 7 C 0.52 12.11 6.03 -10.99 -0.07 12.04 16 8 O -0.53 -14.46 16.07 5.56 0.09 -14.37 16 9 C 0.16 3.69 5.32 -5.20 -0.03 3.66 16 10 N -0.56 -13.57 1.91 -165.75 -0.32 -13.88 16 11 C -0.24 -6.28 8.19 -15.06 -0.12 -6.40 16 12 H 0.08 2.13 5.09 -52.49 -0.27 1.86 16 13 C 0.00 -0.10 4.87 -17.43 -0.08 -0.18 16 14 N -0.90 -25.00 9.28 55.49 0.51 -24.49 16 15 Si 0.90 21.73 29.61 -169.99 -5.03 16.69 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 19 C 0.17 3.70 3.42 -66.81 -0.23 3.47 16 20 C -0.13 -2.43 6.08 -25.03 -0.15 -2.58 16 21 C -0.12 -2.16 6.51 -24.70 -0.16 -2.33 16 22 C -0.12 -2.18 6.83 -25.07 -0.17 -2.35 16 23 C -0.13 -2.71 6.24 -25.61 -0.16 -2.87 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.64 6.86 -51.93 -0.36 0.29 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.77 6.86 -51.93 -0.36 0.42 16 31 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.38 6.11 6.16 -40.82 -0.25 5.86 16 36 H 0.10 2.42 6.39 -51.93 -0.33 2.09 16 37 H 0.03 0.62 8.06 -51.93 -0.42 0.20 16 38 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.05 0.94 7.90 -51.93 -0.41 0.53 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.35 7.97 -51.93 -0.41 0.94 16 42 H 0.07 1.49 5.89 -51.93 -0.31 1.18 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.09 2.21 7.34 -51.93 -0.38 1.83 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -30.34 357.88 -8.58 -38.92 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.55 Total: 6.01 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -0.38 Total: -0.16 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.10 Total: -52.48 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.09 Total: -14.37 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.34 -8.58 -38.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599297866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.297 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds