Wall clock time and date at job start Tue Mar 31 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47416 * 2 1 4 4 C 1.52995 * 109.47006 * 239.99992 * 2 1 3 5 5 C 1.53000 * 109.46862 * 120.00416 * 2 1 3 6 6 N 1.46502 * 109.47515 * 59.99517 * 5 2 1 7 7 C 1.34774 * 119.99868 * 179.97438 * 6 5 2 8 8 O 1.21275 * 120.00329 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99389 * 180.02562 * 7 6 5 10 10 N 1.46901 * 109.46566 * 180.02562 * 9 7 6 11 11 C 1.46908 * 110.99873 * 189.99893 * 10 9 7 12 12 C 1.50702 * 109.46589 * 68.55653 * 11 10 9 13 13 H 1.07998 * 120.00177 * 355.80452 * 12 11 10 14 14 C 1.37878 * 119.99757 * 175.80078 * 12 11 10 15 15 N 1.31519 * 119.99957 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00109 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46958 * 60.00332 * 16 14 12 18 18 H 1.48501 * 109.47183 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46997 * 300.00050 * 16 14 12 20 20 C 1.46895 * 111.00108 * 66.05025 * 10 9 7 21 21 C 1.53004 * 109.47549 * 199.97934 * 20 10 9 22 22 C 1.52995 * 117.50085 * 242.63728 * 21 20 10 23 23 C 1.52992 * 117.50112 * 174.01335 * 21 20 10 24 24 H 1.09000 * 109.47093 * 300.00136 * 1 2 3 25 25 H 1.09006 * 109.47119 * 59.99642 * 1 2 3 26 26 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46760 * 179.97438 * 3 2 1 28 28 H 1.08990 * 109.47115 * 299.99988 * 3 2 1 29 29 H 1.08997 * 109.46608 * 59.99937 * 3 2 1 30 30 H 1.09007 * 109.47155 * 300.00250 * 4 2 1 31 31 H 1.08998 * 109.47488 * 60.00167 * 4 2 1 32 32 H 1.09005 * 109.47608 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46816 * 299.99618 * 5 2 1 34 34 H 1.08999 * 109.47189 * 180.02562 * 5 2 1 35 35 H 0.97006 * 119.99549 * 0.02562 * 6 5 2 36 36 H 1.09000 * 109.47241 * 60.00397 * 9 7 6 37 37 H 1.08998 * 109.47512 * 299.99771 * 9 7 6 38 38 H 1.08997 * 109.47287 * 188.55716 * 11 10 9 39 39 H 1.08994 * 109.47114 * 308.56021 * 11 10 9 40 40 H 0.96996 * 119.99889 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.47102 * 319.97845 * 20 10 9 42 42 H 1.09006 * 109.47605 * 79.97901 * 20 10 9 43 43 H 1.09007 * 115.54309 * 28.33782 * 21 20 10 44 44 H 1.09000 * 117.49984 * 359.97438 * 22 21 20 45 45 H 1.08997 * 117.50262 * 145.01817 * 22 21 20 46 46 H 1.09009 * 117.49410 * 214.98042 * 23 21 20 47 47 H 1.09000 * 117.50255 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0399 -0.7214 1.2492 6 7 1.5515 -2.1026 1.2492 7 6 1.8775 -2.9326 2.2598 8 8 2.5748 -2.5360 3.1694 9 6 1.3755 -4.3535 2.2594 10 7 1.8651 -5.0460 3.4589 11 6 1.5987 -6.4885 3.3796 12 6 2.4579 -7.0994 2.3027 13 1 3.0839 -6.4689 1.6887 14 6 2.4450 -8.4634 2.1015 15 7 1.6824 -9.2312 2.8489 16 14 3.5095 -9.2206 0.7662 17 1 4.9366 -8.9114 1.0361 18 1 3.3153 -10.6928 0.7538 19 1 3.1223 -8.6596 -0.5531 20 6 1.2792 -4.4687 4.6760 21 6 2.1428 -4.8396 5.8833 22 6 1.5001 -5.6976 6.9749 23 6 1.7779 -4.2151 7.2315 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6765 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2491 33 1 1.6766 -0.2075 2.1392 34 1 3.1299 -0.7210 1.2495 35 1 0.9941 -2.4198 0.5215 36 1 1.7389 -4.8670 1.3693 37 1 0.2855 -4.3539 2.2596 38 1 1.8308 -6.9541 4.3374 39 1 0.5476 -6.6514 3.1417 40 1 1.6731 -10.1907 2.7071 41 1 1.2365 -3.3838 4.5794 42 1 0.2718 -4.8610 4.8158 43 1 3.2002 -5.0011 5.6730 44 1 0.4618 -5.9975 6.8332 45 1 2.1344 -6.4238 7.4830 46 1 2.5953 -3.9661 7.9084 47 1 0.9229 -3.5397 7.2584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599308853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:43 Heat of formation + Delta-G solvation = -22.665698 kcal Electronic energy + Delta-G solvation = -22944.402043 eV Core-core repulsion = 19741.585069 eV Total energy + Delta-G solvation = -3202.816974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.66789 -37.93716 -37.02290 -35.07413 -33.29148 -32.43234 -28.39739 -27.58040 -27.56034 -27.48604 -25.69538 -23.85766 -21.86715 -21.19238 -20.06824 -19.55929 -19.08973 -16.75308 -16.42278 -15.86138 -15.52410 -15.13492 -14.57447 -14.52830 -14.24408 -14.08215 -13.74808 -13.56330 -13.30859 -13.04155 -12.68513 -12.40691 -12.15524 -12.03520 -11.91084 -11.80434 -11.28367 -11.24247 -11.06239 -11.05299 -10.95954 -10.85445 -10.73252 -10.69793 -10.63067 -9.96500 -9.76163 -9.42752 -9.24132 -8.95464 -8.76596 -8.40865 -7.20525 -6.00914 -4.02466 3.14188 3.33478 3.38294 3.41234 3.44300 4.35985 4.44564 4.46780 4.57262 4.65341 4.91379 5.15960 5.28974 5.32806 5.35206 5.37500 5.40471 5.49565 5.53565 5.58060 5.63578 5.69262 5.74582 5.76032 5.85978 5.92853 5.95000 6.03667 6.08210 6.11273 6.12421 6.19942 6.30550 6.34983 6.49660 6.58907 6.69918 6.94251 7.29035 7.37132 7.75087 7.82123 8.13176 8.23333 8.55857 8.70458 9.04534 9.61538 11.09582 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.004822 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.061844 B = 5805.492740 C = 7695.253407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.143 4.143 5 C 0.133 3.867 6 N -0.739 5.739 7 C 0.511 3.489 8 O -0.522 6.522 9 C 0.045 3.955 10 N -0.516 5.516 11 C 0.195 3.805 12 C -0.509 4.509 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.087 3.913 21 C -0.118 4.118 22 C -0.183 4.183 23 C -0.189 4.189 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.112 0.888 37 H 0.047 0.953 38 H 0.043 0.957 39 H -0.013 1.013 40 H 0.261 0.739 41 H 0.073 0.927 42 H 0.019 0.981 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 17.432 -4.274 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.197 4.197 4 C -0.201 4.201 5 C 0.009 3.991 6 N -0.395 5.395 7 C 0.298 3.702 8 O -0.397 6.397 9 C -0.086 4.086 10 N -0.241 5.241 11 C 0.070 3.930 12 C -0.548 4.548 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.724 3.276 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.041 4.041 21 C -0.137 4.137 22 C -0.220 4.220 23 C -0.226 4.226 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.130 0.870 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.005 0.995 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.037 0.963 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.622 17.571 -3.536 18.114 hybrid contribution -0.589 -0.859 -1.107 1.520 sum -3.211 16.712 -4.643 17.640 Atomic orbital electron populations 1.21889 0.94154 1.02055 1.01892 1.20810 0.96178 0.96003 0.95252 1.21801 1.01291 0.94576 1.01991 1.21895 1.01433 1.00304 0.96450 1.21288 0.99045 0.81925 0.96888 1.46138 1.55107 1.12034 1.26222 1.21121 0.80021 0.87812 0.81239 1.90650 1.36584 1.76987 1.35462 1.21871 0.97544 0.90681 0.98520 1.61767 1.58001 1.05819 0.98466 1.19796 0.94506 0.80169 0.98537 1.21134 1.24971 0.91792 1.16893 0.92074 1.24961 0.95750 0.97161 0.96507 1.69949 1.39331 1.04872 1.39478 0.86600 0.81089 0.77904 0.82032 1.20174 1.21384 1.20360 1.21644 0.93535 0.99164 0.89769 1.22163 1.00935 1.02068 0.88530 1.22981 1.01603 0.93050 1.04370 1.22894 1.02952 0.96077 1.00701 0.92449 0.92481 0.92428 0.92322 0.92282 0.92408 0.92325 0.92499 0.92310 0.91940 0.91761 0.76833 0.87007 0.93541 0.93863 0.99537 0.92897 0.90885 0.96265 0.87142 0.89365 0.89295 0.89466 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.30 37.16 0.31 -0.80 16 2 C -0.08 -0.69 0.78 -154.51 -0.12 -0.81 16 3 C -0.14 -1.02 8.47 37.16 0.31 -0.71 16 4 C -0.14 -1.19 8.30 37.15 0.31 -0.88 16 5 C 0.13 1.52 4.56 -4.04 -0.02 1.50 16 6 N -0.74 -9.56 4.96 -60.29 -0.30 -9.86 16 7 C 0.51 8.89 7.34 -10.98 -0.08 8.81 16 8 O -0.52 -10.86 14.55 5.56 0.08 -10.78 16 9 C 0.05 0.86 5.29 -4.97 -0.03 0.83 16 10 N -0.52 -11.50 4.14 -237.51 -0.98 -12.48 16 11 C 0.19 5.04 4.55 -4.97 -0.02 5.02 16 12 C -0.51 -14.13 8.48 -34.44 -0.29 -14.42 16 13 H 0.06 1.68 7.20 -52.49 -0.38 1.30 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 16 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.09 1.75 4.77 -3.83 -0.02 1.73 16 21 C -0.12 -2.27 5.19 -90.62 -0.47 -2.74 16 22 C -0.18 -3.15 10.18 -26.74 -0.27 -3.42 16 23 C -0.19 -2.97 10.25 -26.74 -0.27 -3.25 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 6.86 -51.93 -0.36 0.10 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 6.86 -51.92 -0.36 0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.40 4.24 6.16 -40.82 -0.25 3.98 16 36 H 0.11 2.18 6.76 -51.93 -0.35 1.83 16 37 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 38 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 39 H -0.01 -0.36 8.10 -51.93 -0.42 -0.78 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.07 1.45 5.86 -51.93 -0.30 1.14 16 42 H 0.02 0.38 7.73 -51.93 -0.40 -0.02 16 43 H 0.11 2.33 8.14 -51.93 -0.42 1.91 16 44 H 0.09 1.50 8.03 -51.93 -0.42 1.09 16 45 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -31.41 372.96 -9.30 -40.71 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.67 Total: 3.61 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.76 Total: -7.62 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.55 Total: -48.00 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.41 -9.30 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599308853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.042 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds