Wall clock time and date at job start Tue Mar 31 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46790 * 2 1 4 4 C 1.52999 * 109.46901 * 239.99842 * 2 1 3 5 5 C 1.52997 * 109.46903 * 119.99848 * 2 1 3 6 6 N 1.46499 * 109.47555 * 60.00409 * 5 2 1 7 7 C 1.34777 * 120.00199 * 180.02562 * 6 5 2 8 8 O 1.21283 * 119.99750 * 359.97438 * 7 6 5 9 9 C 1.50702 * 119.99928 * 180.27479 * 7 6 5 10 10 N 1.46902 * 109.47027 * 179.72353 * 9 7 6 11 11 C 1.46848 * 110.99759 * 294.20938 * 10 9 7 12 12 C 1.53031 * 109.52183 * 174.16278 * 11 10 9 13 13 C 1.53125 * 109.28019 * 59.17805 * 12 11 10 14 14 C 1.50700 * 109.57267 * 182.40843 * 13 12 11 15 15 H 1.07998 * 119.99727 * 119.71375 * 14 13 12 16 16 C 1.37871 * 120.00453 * 299.71254 * 14 13 12 17 17 N 1.31515 * 120.00446 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47024 * 89.99865 * 18 16 14 20 20 H 1.48495 * 109.47106 * 209.99950 * 18 16 14 21 21 H 1.48506 * 109.46957 * 330.00121 * 18 16 14 22 22 C 1.53118 * 109.15784 * 302.34549 * 13 12 11 23 23 C 1.46843 * 110.99818 * 169.99758 * 10 9 7 24 24 H 1.08992 * 109.47503 * 300.00055 * 1 2 3 25 25 H 1.09000 * 109.47703 * 60.00641 * 1 2 3 26 26 H 1.09007 * 109.46685 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46799 * 179.97438 * 3 2 1 28 28 H 1.09008 * 109.46827 * 299.99559 * 3 2 1 29 29 H 1.08992 * 109.47143 * 59.99725 * 3 2 1 30 30 H 1.08993 * 109.47298 * 299.99321 * 4 2 1 31 31 H 1.09001 * 109.47411 * 60.00254 * 4 2 1 32 32 H 1.09002 * 109.46412 * 180.02562 * 4 2 1 33 33 H 1.08998 * 109.47382 * 299.99970 * 5 2 1 34 34 H 1.09002 * 109.47216 * 180.02562 * 5 2 1 35 35 H 0.97000 * 119.99484 * 359.97438 * 6 5 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 9 7 6 37 37 H 1.08994 * 109.46990 * 59.72065 * 9 7 6 38 38 H 1.09003 * 109.45649 * 294.17520 * 11 10 9 39 39 H 1.08995 * 109.46466 * 54.14585 * 11 10 9 40 40 H 1.09001 * 109.50516 * 299.23843 * 12 11 10 41 41 H 1.09000 * 109.50603 * 179.12077 * 12 11 10 42 42 H 1.08994 * 109.51952 * 62.24835 * 13 12 11 43 43 H 0.96995 * 120.00093 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.50142 * 297.71135 * 22 13 12 45 45 H 1.08995 * 109.50409 * 177.59757 * 22 13 12 46 46 H 1.08996 * 109.46300 * 305.85393 * 23 10 9 47 47 H 1.09004 * 109.46280 * 65.83399 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -2.1025 1.2493 7 6 1.8769 -2.9321 2.2605 8 8 2.5741 -2.5353 3.1701 9 6 1.3797 -4.3548 2.2573 10 7 1.8733 -5.0486 3.4545 11 6 3.3351 -5.1836 3.4192 12 6 3.8259 -5.7771 4.7416 13 6 3.1731 -7.1458 4.9547 14 6 3.6061 -7.7102 6.2832 15 1 2.8697 -7.9321 7.0414 16 6 4.9422 -7.9435 6.5308 17 7 5.3199 -8.4366 7.6900 18 14 6.2160 -7.5592 5.2196 19 1 6.6857 -6.1597 5.3810 20 1 7.3668 -8.4870 5.3605 21 1 5.6079 -7.7253 3.8750 22 6 1.6506 -6.9843 4.9389 23 6 1.2228 -6.3557 3.6108 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1393 32 1 3.1300 -0.7216 -1.2489 33 1 1.6766 -0.2074 2.1392 34 1 3.1300 -0.7208 1.2495 35 1 0.9938 -2.4196 0.5220 36 1 0.2897 -4.3587 2.2586 37 1 1.7439 -4.8649 1.3656 38 1 3.6193 -5.8418 2.5981 39 1 3.7871 -4.2028 3.2714 40 1 3.5541 -5.1127 5.5618 41 1 4.9094 -5.8918 4.7092 42 1 3.4760 -7.8221 4.1554 43 1 6.2599 -8.6010 7.8640 44 1 1.3446 -6.3388 5.7623 45 1 1.1798 -7.9613 5.0475 46 1 0.1406 -6.2262 3.6021 47 1 1.5171 -7.0085 2.7889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599357376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:20 Heat of formation + Delta-G solvation = -46.351705 kcal Electronic energy + Delta-G solvation = -23051.965365 eV Core-core repulsion = 19848.121289 eV Total energy + Delta-G solvation = -3203.844076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.06825 -38.44357 -37.38508 -33.88571 -33.62461 -31.62167 -30.11344 -28.42017 -27.74025 -27.69236 -26.15569 -24.26552 -22.49229 -21.36649 -20.40668 -19.37846 -18.77674 -17.01211 -16.59308 -16.36051 -15.72034 -15.29984 -14.87512 -14.71139 -14.22335 -14.06597 -13.96978 -13.77611 -13.24433 -13.09564 -12.88225 -12.73374 -12.57203 -12.27825 -12.15712 -12.09715 -11.73779 -11.55321 -11.43464 -11.25679 -11.17184 -11.05465 -10.80899 -10.46459 -10.08666 -9.88938 -9.64342 -9.46580 -9.12737 -8.98706 -8.78384 -8.41697 -7.90249 -5.98121 -3.95848 2.74043 3.04001 3.36043 3.43937 3.46338 4.26050 4.30244 4.37906 4.45708 4.49966 4.81971 4.98295 5.12775 5.20468 5.23567 5.29064 5.34349 5.34949 5.39405 5.45080 5.53619 5.55174 5.58846 5.65440 5.72281 5.77524 5.90736 5.92188 5.92921 5.99003 6.16037 6.30521 6.37211 6.47769 6.59272 6.81300 6.90285 7.05672 7.30855 7.32116 7.53184 7.59160 7.74625 7.88525 8.32162 8.63086 9.06588 9.65457 11.15501 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030465 B = 0.003445 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.854840 B = 8126.481669 C = 8595.578289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.143 4.143 5 C 0.131 3.869 6 N -0.737 5.737 7 C 0.510 3.490 8 O -0.511 6.511 9 C 0.036 3.964 10 N -0.516 5.516 11 C 0.052 3.948 12 C -0.112 4.112 13 C 0.012 3.988 14 C -0.508 4.508 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.904 5.904 18 Si 0.887 3.113 19 H -0.278 1.278 20 H -0.299 1.299 21 H -0.268 1.268 22 C -0.095 4.095 23 C 0.058 3.942 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.396 0.604 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.489 16.284 -20.575 28.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.198 4.198 4 C -0.200 4.200 5 C 0.007 3.993 6 N -0.392 5.392 7 C 0.296 3.704 8 O -0.385 6.385 9 C -0.095 4.095 10 N -0.242 5.242 11 C -0.075 4.075 12 C -0.150 4.150 13 C -0.007 4.007 14 C -0.546 4.546 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.718 3.282 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.193 1.193 22 C -0.133 4.133 23 C -0.070 4.070 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.117 0.883 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.933 16.786 -19.361 27.482 hybrid contribution 0.758 -0.403 -1.732 1.933 sum -9.175 16.383 -21.093 28.240 Atomic orbital electron populations 1.21890 0.94033 1.01923 1.02136 1.20815 0.96259 0.96159 0.95003 1.21809 1.01360 0.94403 1.02196 1.21893 1.01432 1.00045 0.96651 1.21352 0.99128 0.81503 0.97312 1.46072 1.55047 1.12353 1.25746 1.20724 0.80452 0.87691 0.81529 1.90719 1.36134 1.76740 1.34902 1.21934 1.01357 0.91967 0.94291 1.61656 1.06894 1.20579 1.35024 1.22346 0.86274 1.00430 0.98482 1.21955 0.98390 0.99328 0.95291 1.19208 0.91726 0.92099 0.97677 1.21064 0.93302 1.41324 0.98883 0.90871 1.25017 0.98501 0.94660 0.95121 1.69904 1.16444 1.45362 1.22609 0.86850 0.80949 0.77444 0.82983 1.20495 1.22691 1.19320 1.21484 0.98159 0.98949 0.94730 1.22228 0.97557 0.88116 0.99070 0.92269 0.92370 0.92594 0.92266 0.92162 0.92236 0.92619 0.92346 0.92313 0.91495 0.91608 0.76885 0.88299 0.92589 0.96406 0.90194 0.91140 0.93573 0.96161 0.92812 0.91679 0.92268 0.91773 0.95537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.30 37.16 0.31 -0.50 16 2 C -0.08 -0.52 0.78 -154.51 -0.12 -0.64 16 3 C -0.14 -0.82 8.47 37.16 0.31 -0.51 16 4 C -0.14 -0.84 8.30 37.16 0.31 -0.53 16 5 C 0.13 1.22 4.56 -4.04 -0.02 1.20 16 6 N -0.74 -7.12 4.96 -60.29 -0.30 -7.42 16 7 C 0.51 7.08 7.50 -10.98 -0.08 7.00 16 8 O -0.51 -9.56 14.33 5.55 0.08 -9.48 16 9 C 0.04 0.47 5.45 -4.97 -0.03 0.44 16 10 N -0.52 -9.08 4.40 -236.12 -1.04 -10.12 16 11 C 0.05 1.04 5.11 -3.84 -0.02 1.02 16 12 C -0.11 -2.64 4.84 -26.65 -0.13 -2.77 16 13 C 0.01 0.29 1.75 -91.65 -0.16 0.13 16 14 C -0.51 -14.74 9.15 -34.44 -0.32 -15.06 16 15 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 17 N -0.90 -28.57 13.96 55.43 0.77 -27.79 16 18 Si 0.89 22.98 24.36 -169.99 -4.14 18.84 16 19 H -0.28 -7.11 6.89 56.52 0.39 -6.72 16 20 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 21 H -0.27 -6.65 6.53 56.52 0.37 -6.28 16 22 C -0.10 -1.96 5.32 -26.65 -0.14 -2.10 16 23 C 0.06 0.97 5.46 -3.84 -0.02 0.95 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.30 6.86 -51.93 -0.36 -0.06 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.31 6.86 -51.93 -0.36 -0.05 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.40 2.71 6.16 -40.82 -0.25 2.46 16 36 H 0.10 1.02 7.99 -51.93 -0.41 0.60 16 37 H 0.06 0.64 8.12 -51.93 -0.42 0.21 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 1.63 5.78 -51.93 -0.30 1.33 16 40 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.05 1.14 3.38 -51.93 -0.18 0.97 16 42 H 0.02 0.51 7.19 -51.93 -0.37 0.13 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 0.90 8.01 -51.93 -0.42 0.49 16 47 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -34.01 353.62 -8.08 -42.09 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -8.58 Total: -2.00 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.20 Total: -9.45 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.56 Total: -45.33 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.14 Total: 18.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.01 -8.08 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599357376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.257 kcal (2) G-P(sol) polarization free energy of solvation -34.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds