Wall clock time and date at job start Tue Mar 31 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46817 * 2 1 4 4 C 1.52999 * 109.47209 * 239.99745 * 2 1 3 5 5 C 1.53006 * 109.46906 * 119.99315 * 2 1 3 6 6 N 1.46500 * 109.46710 * 60.00593 * 5 2 1 7 7 C 1.34780 * 119.99815 * 179.97438 * 6 5 2 8 8 O 1.21281 * 120.00159 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00122 * 179.97438 * 7 6 5 10 10 N 1.46896 * 109.47474 * 179.97438 * 9 7 6 11 11 C 1.46846 * 110.99998 * 294.21414 * 10 9 7 12 12 C 1.53042 * 109.52384 * 174.15789 * 11 10 9 13 13 C 1.53120 * 109.27679 * 59.17688 * 12 11 10 14 14 C 1.53114 * 109.16161 * 302.34397 * 13 12 11 15 15 H 1.09004 * 109.50600 * 297.71890 * 14 13 12 16 16 C 1.50704 * 109.50447 * 177.59739 * 14 13 12 17 17 H 1.08002 * 119.99914 * 240.19974 * 16 14 13 18 18 C 1.37871 * 119.99709 * 60.19866 * 16 14 13 19 19 N 1.31507 * 120.00312 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99691 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47211 * 60.00071 * 20 18 16 22 22 H 1.48497 * 109.46950 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47261 * 299.99881 * 20 18 16 24 24 C 1.46850 * 111.00472 * 170.00002 * 10 9 7 25 25 H 1.09002 * 109.47060 * 300.00144 * 1 2 3 26 26 H 1.09000 * 109.47163 * 60.00477 * 1 2 3 27 27 H 1.09002 * 109.47130 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46881 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46865 * 299.99706 * 3 2 1 30 30 H 1.09002 * 109.47423 * 60.00078 * 3 2 1 31 31 H 1.09002 * 109.46765 * 299.99845 * 4 2 1 32 32 H 1.09000 * 109.47038 * 60.00340 * 4 2 1 33 33 H 1.08996 * 109.46818 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47227 * 300.00133 * 5 2 1 35 35 H 1.09004 * 109.46913 * 180.02562 * 5 2 1 36 36 H 0.97001 * 120.00412 * 359.97438 * 6 5 2 37 37 H 1.09002 * 109.47120 * 59.99722 * 9 7 6 38 38 H 1.09004 * 109.46990 * 299.99968 * 9 7 6 39 39 H 1.08993 * 109.46639 * 54.13954 * 11 10 9 40 40 H 1.09010 * 109.45973 * 294.17120 * 11 10 9 41 41 H 1.08998 * 109.50041 * 299.23667 * 12 11 10 42 42 H 1.09005 * 109.50105 * 179.11475 * 12 11 10 43 43 H 1.08995 * 109.52336 * 182.44133 * 13 12 11 44 44 H 1.09002 * 109.52444 * 62.25092 * 13 12 11 45 45 H 0.97003 * 120.00453 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.45831 * 65.81919 * 24 10 9 47 47 H 1.08998 * 109.45719 * 305.85769 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2494 6 7 1.5517 -2.1024 1.2494 7 6 1.8776 -2.9323 2.2600 8 8 2.5756 -2.5359 3.1692 9 6 1.3749 -4.3530 2.2604 10 7 1.8656 -5.0458 3.4592 11 6 3.3268 -5.1867 3.4245 12 6 3.8151 -5.7789 4.7485 13 6 3.1569 -7.1444 4.9648 14 6 1.6351 -6.9770 4.9485 15 1 1.3314 -6.3282 5.7701 16 6 0.9789 -8.3250 5.1018 17 1 0.3240 -8.6978 4.3282 18 6 1.2147 -9.0821 6.2296 19 7 2.0126 -8.6284 7.1713 20 14 0.4020 -10.7534 6.4192 21 1 0.8190 -11.6365 5.3005 22 1 0.8153 -11.3612 7.7095 23 1 -1.0740 -10.5913 6.3981 24 6 1.2100 -6.3501 3.6187 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 1.6766 -0.2072 2.1393 35 1 3.1300 -0.7207 1.2496 36 1 0.9938 -2.4196 0.5220 37 1 1.7375 -4.8669 1.3702 38 1 0.2849 -4.3526 2.2611 39 1 3.7826 -4.2081 3.2743 40 1 3.6086 -5.8480 2.6050 41 1 3.5458 -5.1113 5.5670 42 1 4.8982 -5.8979 4.7165 43 1 3.4684 -7.5505 5.9271 44 1 3.4572 -7.8240 4.1672 45 1 2.1783 -9.1609 7.9649 46 1 1.5016 -7.0058 2.7983 47 1 0.1283 -6.2163 3.6095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599468724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:32 Heat of formation + Delta-G solvation = -54.989394 kcal Electronic energy + Delta-G solvation = -22920.016148 eV Core-core repulsion = 19715.797514 eV Total energy + Delta-G solvation = -3204.218634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.93752 -38.24157 -37.19127 -33.59496 -33.53257 -31.68006 -29.77779 -27.91162 -27.68162 -27.63128 -25.39417 -24.86260 -22.04508 -21.40620 -20.26954 -19.29738 -18.54180 -16.86382 -16.46516 -15.95116 -15.61537 -14.87425 -14.70896 -14.64682 -14.29879 -13.98654 -13.75877 -13.60332 -13.10693 -12.95776 -12.68096 -12.52495 -12.33875 -12.16806 -12.07028 -12.04305 -11.58885 -11.26193 -11.21719 -11.11535 -10.99919 -10.89881 -10.67590 -10.59730 -10.03473 -9.77173 -9.68020 -9.34692 -9.04892 -8.87189 -8.63823 -8.23964 -7.60214 -5.92108 -3.98833 2.85879 3.16625 3.34902 3.39825 3.41761 4.32077 4.43315 4.43652 4.50995 4.64355 4.95787 5.05527 5.18902 5.25426 5.37558 5.40476 5.42831 5.48059 5.50288 5.52094 5.59996 5.62036 5.71390 5.82419 5.90308 5.95527 5.96731 5.98115 6.20944 6.36508 6.43340 6.48485 6.60249 6.82934 6.89557 7.02557 7.32107 7.40104 7.54688 7.73887 7.79975 7.86914 8.15011 8.24434 8.43243 8.53142 9.05158 9.65021 11.13799 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038933 B = 0.003035 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.009986 B = 9224.610532 C = 9581.369654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.143 4.143 5 C 0.132 3.868 6 N -0.738 5.738 7 C 0.512 3.488 8 O -0.516 6.516 9 C 0.036 3.964 10 N -0.521 5.521 11 C 0.060 3.940 12 C -0.114 4.114 13 C -0.111 4.111 14 C 0.056 3.944 15 H 0.035 0.965 16 C -0.516 4.516 17 H 0.053 0.947 18 C 0.063 3.937 19 N -0.887 5.887 20 Si 0.890 3.110 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.068 3.932 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.396 0.604 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.015 0.985 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.028 0.972 45 H 0.260 0.740 46 H 0.019 0.981 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.917 16.381 -16.858 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.197 4.197 4 C -0.200 4.200 5 C 0.008 3.992 6 N -0.393 5.393 7 C 0.298 3.702 8 O -0.389 6.389 9 C -0.095 4.095 10 N -0.246 5.246 11 C -0.068 4.068 12 C -0.152 4.152 13 C -0.149 4.149 14 C 0.037 3.963 15 H 0.053 0.947 16 C -0.554 4.554 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.719 3.281 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.058 4.058 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.033 0.967 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.038 0.962 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.436 16.895 -15.578 22.985 hybrid contribution -0.533 -1.584 -1.013 1.955 sum -0.969 15.311 -16.590 22.596 Atomic orbital electron populations 1.21893 0.94016 1.02017 1.02100 1.20819 0.96291 0.96109 0.95046 1.21808 1.01286 0.94464 1.02165 1.21890 1.01357 1.00118 0.96632 1.21333 0.99002 0.81659 0.97240 1.46100 1.55061 1.12255 1.25902 1.20828 0.80259 0.87775 0.81313 1.90681 1.36459 1.76835 1.34970 1.21937 1.01469 0.91603 0.94540 1.61722 1.06223 1.22307 1.34310 1.22178 0.87285 0.99742 0.97580 1.21630 0.97895 0.99347 0.96341 1.21662 0.98008 0.92800 1.02418 1.18651 0.92140 0.94677 0.90825 0.94657 1.21102 1.27885 1.02380 1.04080 0.92916 1.24934 0.95199 0.97888 0.95814 1.69889 1.36389 1.37705 1.08608 0.86692 0.79838 0.84416 0.77202 1.20425 1.21338 1.20332 1.22365 0.97246 0.85942 1.00275 0.92271 0.92401 0.92514 0.92314 0.92198 0.92262 0.92557 0.92390 0.92357 0.91579 0.91714 0.76867 0.92862 0.88364 0.90638 0.96663 0.91957 0.93692 0.89174 0.95275 0.92999 0.96231 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.30 37.16 0.31 -0.60 16 2 C -0.08 -0.56 0.78 -154.50 -0.12 -0.69 16 3 C -0.14 -0.85 8.47 37.16 0.31 -0.54 16 4 C -0.14 -0.90 8.30 37.16 0.31 -0.59 16 5 C 0.13 1.28 4.57 -4.04 -0.02 1.27 16 6 N -0.74 -7.79 4.96 -60.29 -0.30 -8.09 16 7 C 0.51 7.64 7.50 -10.99 -0.08 7.55 16 8 O -0.52 -9.89 14.33 5.56 0.08 -9.81 16 9 C 0.04 0.54 5.45 -4.98 -0.03 0.52 16 10 N -0.52 -10.28 4.40 -236.12 -1.04 -11.32 16 11 C 0.06 1.18 5.10 -3.83 -0.02 1.16 16 12 C -0.11 -2.47 6.09 -26.65 -0.16 -2.63 16 13 C -0.11 -2.74 5.03 -26.61 -0.13 -2.88 16 14 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 15 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.52 -14.31 8.56 -34.44 -0.29 -14.61 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.77 5.30 -17.83 -0.09 1.67 16 19 N -0.89 -25.84 11.36 55.43 0.63 -25.21 16 20 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.07 1.48 4.68 -3.83 -0.02 1.46 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.35 6.86 -51.93 -0.36 0.00 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 6.86 -51.93 -0.36 -0.01 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 3.14 6.16 -40.82 -0.25 2.89 16 37 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 38 H 0.10 1.29 7.99 -51.93 -0.41 0.88 16 39 H 0.08 1.49 5.78 -51.93 -0.30 1.19 16 40 H 0.02 0.29 8.14 -51.92 -0.42 -0.13 16 41 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 2.47 6.16 -51.93 -0.32 2.15 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 1.23 8.02 -51.93 -0.42 0.82 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -31.55 360.45 -9.18 -40.73 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.72 Total: -0.49 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.25 Total: -7.67 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: -0.71 Total: -44.62 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.55 -9.18 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599468724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.258 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds