Wall clock time and date at job start Tue Mar 31 2020 05:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46894 * 111.00265 * 2 1 4 4 C 1.50699 * 109.46905 * 293.95338 * 3 2 1 5 5 O 1.21283 * 120.00201 * 359.97438 * 4 3 2 6 6 N 1.34785 * 120.00090 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00029 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46916 * 184.82826 * 7 6 4 9 9 C 1.50693 * 115.54898 * 305.77942 * 8 7 6 10 10 H 1.08004 * 119.99544 * 95.25073 * 9 8 7 11 11 C 1.37875 * 120.00524 * 274.97361 * 9 8 7 12 12 N 1.31520 * 119.99682 * 355.42119 * 11 9 8 13 13 Si 1.86797 * 120.00365 * 175.42039 * 11 9 8 14 14 H 1.48499 * 109.47214 * 90.00005 * 13 11 9 15 15 H 1.48498 * 109.47307 * 210.00269 * 13 11 9 16 16 H 1.48501 * 109.47035 * 330.00313 * 13 11 9 17 17 C 1.52997 * 117.49762 * 91.45479 * 8 7 6 18 18 C 1.53000 * 117.49856 * 160.11150 * 8 7 6 19 19 C 1.46901 * 110.99783 * 123.95676 * 2 1 3 20 20 C 1.52996 * 109.47368 * 92.16017 * 19 2 1 21 21 C 1.53000 * 109.47304 * 52.77594 * 20 19 2 22 22 C 1.53008 * 109.47126 * 172.77044 * 20 19 2 23 23 C 1.52995 * 109.47193 * 292.76893 * 20 19 2 24 24 H 1.09000 * 109.47149 * 65.73043 * 1 2 3 25 25 H 1.09000 * 109.46807 * 185.72980 * 1 2 3 26 26 H 1.08998 * 109.46883 * 305.72753 * 1 2 3 27 27 H 1.08995 * 109.47316 * 173.95348 * 3 2 1 28 28 H 1.09000 * 109.47039 * 53.95418 * 3 2 1 29 29 H 0.96998 * 119.99555 * 359.97438 * 6 4 3 30 30 H 1.08995 * 109.47504 * 64.83019 * 7 6 4 31 31 H 1.09000 * 109.46996 * 304.82370 * 7 6 4 32 32 H 0.96997 * 119.99605 * 185.00147 * 12 11 9 33 33 H 1.09001 * 117.49881 * 215.00109 * 17 8 7 34 34 H 1.09002 * 117.50180 * 0.02562 * 17 8 7 35 35 H 1.09001 * 117.49933 * 359.97438 * 18 8 7 36 36 H 1.08996 * 117.50148 * 144.97068 * 18 8 7 37 37 H 1.09009 * 109.46707 * 212.16070 * 19 2 1 38 38 H 1.08997 * 109.47243 * 332.15234 * 19 2 1 39 39 H 1.08989 * 109.47510 * 59.99385 * 21 20 19 40 40 H 1.08999 * 109.47333 * 180.02562 * 21 20 19 41 41 H 1.09006 * 109.46595 * 299.99355 * 21 20 19 42 42 H 1.09000 * 109.46950 * 59.99930 * 22 20 19 43 43 H 1.08997 * 109.47272 * 179.97438 * 22 20 19 44 44 H 1.08999 * 109.46753 * 300.00027 * 22 20 19 45 45 H 1.08997 * 109.47201 * 64.47753 * 23 20 19 46 46 H 1.08998 * 109.47440 * 184.47822 * 23 20 19 47 47 H 1.09004 * 109.47217 * 304.47958 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0181 3.3201 -1.5234 7 6 1.6692 3.9771 -2.7854 8 6 2.3183 5.3617 -2.8361 9 6 2.0195 6.2628 -1.6658 10 1 2.7068 6.3137 -0.8342 11 6 0.8717 7.0266 -1.6592 12 7 0.0833 7.0379 -2.7118 13 14 0.4363 8.0454 -0.1553 14 1 1.0377 9.3972 -0.2821 15 1 -1.0400 8.1682 -0.0510 16 1 0.9650 7.3808 1.0629 17 6 3.7045 5.4690 -3.4746 18 6 2.4786 6.0169 -4.2094 19 6 1.9954 -0.7661 1.1376 20 6 2.2290 -2.2167 0.7113 21 6 3.0938 -2.2446 -0.5505 22 6 2.9429 -2.9701 1.8355 23 6 0.8839 -2.8863 0.4227 24 1 -0.3633 0.4224 -0.9368 25 1 -0.3633 -1.0226 0.1026 26 1 -0.3633 0.6001 0.8343 27 1 3.0797 1.3443 0.1082 28 1 1.5612 1.9273 0.8309 29 1 2.5228 3.8015 -0.8493 30 1 0.5863 4.0808 -2.8538 31 1 2.0300 3.3759 -3.6199 32 1 -0.6848 7.6298 -2.7362 33 1 4.4005 6.1915 -3.0481 34 1 4.1539 4.5533 -3.8589 35 1 2.1220 5.4614 -5.0768 36 1 2.3676 7.0997 -4.2665 37 1 2.9379 -0.3276 1.4659 38 1 1.2773 -0.7392 1.9571 39 1 4.0520 -1.7676 -0.3449 40 1 3.2598 -3.2781 -0.8545 41 1 2.5852 -1.7080 -1.3515 42 1 2.3268 -2.9502 2.7345 43 1 3.1088 -4.0037 1.5320 44 1 3.9011 -2.4930 2.0411 45 1 0.4112 -2.3993 -0.4302 46 1 1.0439 -3.9405 0.1963 47 1 0.2383 -2.7962 1.2963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602149955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:54 Heat of formation + Delta-G solvation = -18.740335 kcal Electronic energy + Delta-G solvation = -23035.277545 eV Core-core repulsion = 19832.630788 eV Total energy + Delta-G solvation = -3202.646757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.47562 -38.17443 -36.65314 -34.80804 -33.20380 -31.99440 -28.78804 -27.69354 -27.21441 -26.65130 -25.92777 -24.97641 -22.22890 -21.12610 -19.71384 -19.22332 -18.85427 -16.65042 -16.17163 -15.78626 -15.49293 -14.82982 -14.65923 -14.54563 -14.46710 -13.83228 -13.74995 -13.44424 -13.06934 -12.85136 -12.61621 -12.42913 -12.19374 -12.02514 -11.83423 -11.62958 -11.50589 -11.29502 -11.16009 -11.02908 -10.94001 -10.81254 -10.64804 -10.55657 -10.49014 -10.22121 -9.57217 -9.15484 -9.03092 -8.51803 -8.27126 -8.18188 -7.96285 -6.10327 -4.20586 3.22256 3.28825 3.30768 3.31202 3.62091 4.27346 4.33232 4.70800 4.79162 4.97003 5.16214 5.22102 5.26392 5.35739 5.42640 5.46546 5.51182 5.55334 5.58647 5.65216 5.73026 5.75480 5.78249 5.87988 6.00563 6.05218 6.07873 6.17134 6.31528 6.33722 6.40438 6.50413 6.56935 6.57812 6.72520 6.89196 7.04717 7.12197 7.17696 7.33561 7.38275 7.54815 7.77831 8.31932 8.39501 8.81103 8.98462 9.46803 10.96724 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022880 B = 0.003703 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.461024 B = 7558.808039 C = 8075.790036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.517 5.517 3 C 0.035 3.965 4 C 0.504 3.496 5 O -0.543 6.543 6 N -0.703 5.703 7 C 0.166 3.834 8 C 0.024 3.976 9 C -0.501 4.501 10 H 0.060 0.940 11 C 0.074 3.926 12 N -0.873 5.873 13 Si 0.889 3.111 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.211 4.211 18 C -0.144 4.144 19 C 0.062 3.938 20 C -0.061 4.061 21 C -0.132 4.132 22 C -0.141 4.141 23 C -0.145 4.145 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.401 0.599 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.261 0.739 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.049 0.951 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.240 -14.927 8.091 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.240 5.240 3 C -0.096 4.096 4 C 0.289 3.711 5 O -0.421 6.421 6 N -0.353 5.353 7 C 0.043 3.957 8 C 0.024 3.976 9 C -0.539 4.539 10 H 0.078 0.922 11 C -0.130 4.130 12 N -0.509 5.509 13 Si 0.717 3.283 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.248 4.248 18 C -0.182 4.182 19 C -0.066 4.066 20 C -0.062 4.062 21 C -0.189 4.189 22 C -0.199 4.199 23 C -0.202 4.202 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.036 0.964 27 H 0.116 0.884 28 H 0.077 0.923 29 H 0.236 0.764 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.714 -15.531 6.989 17.431 hybrid contribution -0.338 1.423 1.868 2.373 sum 3.375 -14.108 8.857 16.996 Atomic orbital electron populations 1.22858 0.86711 1.01918 1.02351 1.61564 1.08624 1.11561 1.42282 1.22078 1.01482 0.89924 0.96090 1.20335 0.80192 0.82022 0.88564 1.90609 1.40231 1.64585 1.46645 1.45957 1.56209 1.12320 1.20859 1.20885 0.99934 0.91943 0.82971 1.19037 0.92433 0.92234 0.93931 1.20325 1.05741 1.24851 1.02975 0.92218 1.24989 0.95808 0.96304 0.95888 1.69993 1.15677 1.36969 1.28231 0.86642 0.77695 0.80528 0.83438 1.20668 1.21200 1.19815 1.23046 0.92547 1.01338 1.07914 1.22454 1.00140 1.00132 0.95463 1.22260 0.99387 0.93893 0.91105 1.20502 0.95862 0.93926 0.95894 1.21726 0.98906 1.00502 0.97756 1.21875 1.00055 1.00054 0.97935 1.22032 0.96472 0.99909 1.01761 0.89108 0.90870 0.96433 0.88415 0.92295 0.76433 0.91825 0.94268 0.92871 0.90466 0.91713 0.91850 0.89581 0.91483 0.94072 0.93519 0.93908 0.90575 0.93044 0.92622 0.92777 0.91113 0.93220 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.55 60.07 0.51 0.64 16 2 N -0.52 -6.93 3.19 -244.38 -0.78 -7.71 16 3 C 0.04 0.50 5.34 -4.98 -0.03 0.47 16 4 C 0.50 9.27 7.59 -10.98 -0.08 9.19 16 5 O -0.54 -11.75 14.31 5.55 0.08 -11.67 16 6 N -0.70 -13.60 5.41 -60.29 -0.33 -13.92 16 7 C 0.17 3.73 5.58 -4.04 -0.02 3.71 16 8 C 0.02 0.57 1.63 -155.66 -0.25 0.31 16 9 C -0.50 -12.63 8.06 -34.44 -0.28 -12.91 16 10 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 11 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 12 N -0.87 -23.95 12.65 55.43 0.70 -23.24 16 13 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 C -0.21 -4.42 9.92 -26.70 -0.26 -4.68 16 18 C -0.14 -3.30 9.17 -26.70 -0.24 -3.54 16 19 C 0.06 0.66 4.29 -3.83 -0.02 0.65 16 20 C -0.06 -0.61 0.85 -154.51 -0.13 -0.74 16 21 C -0.13 -1.44 8.23 37.16 0.31 -1.14 16 22 C -0.14 -1.16 8.47 37.16 0.31 -0.85 16 23 C -0.14 -1.42 7.14 37.16 0.27 -1.15 16 24 H 0.09 1.53 6.00 -51.93 -0.31 1.22 16 25 H 0.07 0.88 4.88 -51.93 -0.25 0.62 16 26 H 0.02 0.23 8.07 -51.93 -0.42 -0.19 16 27 H 0.10 1.17 7.79 -51.93 -0.40 0.77 16 28 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 29 H 0.40 7.20 7.93 -40.82 -0.32 6.88 16 30 H 0.06 1.63 8.14 -51.93 -0.42 1.20 16 31 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 37 H 0.07 0.67 7.48 -51.92 -0.39 0.28 16 38 H 0.04 0.42 7.75 -51.93 -0.40 0.02 16 39 H 0.05 0.50 8.14 -51.94 -0.42 0.07 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 1.02 7.42 -51.93 -0.39 0.64 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.80 6.03 -51.93 -0.31 0.48 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.43 8.10 -51.93 -0.42 0.01 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -28.28 369.96 -8.45 -36.72 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -8.66 Total: 7.27 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.02 Total: -8.20 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.41 Total: -44.88 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.28 -8.45 -36.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602149955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.983 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds