Wall clock time and date at job start Tue Mar 31 2020 05:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99876 * 2 1 4 4 C 1.46894 * 110.99880 * 123.95629 * 2 1 3 5 5 C 1.52997 * 109.47145 * 164.06464 * 4 2 1 6 6 C 1.50700 * 115.54931 * 305.34645 * 5 4 2 7 7 O 1.21284 * 120.00274 * 124.53436 * 6 5 4 8 8 N 1.34776 * 120.00395 * 304.25444 * 6 5 4 9 9 C 1.46496 * 120.00364 * 175.34595 * 8 6 5 10 10 C 1.52999 * 109.47149 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.46925 * 299.99991 * 10 9 8 12 12 C 1.52998 * 109.47582 * 59.99475 * 10 9 8 13 13 C 1.52996 * 109.47472 * 180.02562 * 10 9 8 14 14 C 1.50696 * 109.47649 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99888 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00189 * 179.97438 * 14 13 10 17 17 N 1.31513 * 119.99901 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99885 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47240 * 59.99973 * 18 16 14 20 20 H 1.48500 * 109.47016 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46965 * 300.00040 * 18 16 14 22 22 C 1.52998 * 117.49860 * 91.01574 * 5 4 2 23 23 C 1.53004 * 117.50118 * 159.67681 * 5 4 2 24 24 H 1.08998 * 109.47330 * 296.04645 * 1 2 3 25 25 H 1.09002 * 109.47039 * 56.04104 * 1 2 3 26 26 H 1.08991 * 109.47564 * 176.04239 * 1 2 3 27 27 H 1.09007 * 109.46866 * 183.95206 * 3 2 1 28 28 H 1.09000 * 109.47399 * 303.95308 * 3 2 1 29 29 H 1.08997 * 109.47118 * 63.95989 * 3 2 1 30 30 H 1.09004 * 109.46832 * 44.06887 * 4 2 1 31 31 H 1.08996 * 109.47332 * 284.06742 * 4 2 1 32 32 H 0.97004 * 119.99775 * 355.34509 * 8 6 5 33 33 H 1.09000 * 109.47105 * 299.99675 * 9 8 6 34 34 H 1.09000 * 109.47506 * 60.00365 * 9 8 6 35 35 H 1.08999 * 109.47717 * 59.99840 * 11 10 9 36 36 H 1.09001 * 109.47428 * 180.02562 * 11 10 9 37 37 H 1.09006 * 109.46803 * 299.99691 * 11 10 9 38 38 H 1.09004 * 109.46471 * 60.00184 * 12 10 9 39 39 H 1.09000 * 109.47456 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47295 * 300.00392 * 12 10 9 41 41 H 1.09004 * 109.46884 * 300.00002 * 13 10 9 42 42 H 1.08998 * 109.47540 * 59.99222 * 13 10 9 43 43 H 0.97010 * 119.99938 * 179.97438 * 17 16 14 44 44 H 1.09002 * 117.49962 * 215.00218 * 22 5 4 45 45 H 1.09001 * 117.49867 * 0.02562 * 22 5 4 46 46 H 1.08998 * 117.49473 * 359.97191 * 23 5 4 47 47 H 1.08996 * 117.49670 * 144.97672 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4731 -1.0828 0.8990 6 6 3.7862 -1.7854 -0.3970 7 8 4.5915 -1.3067 -1.1672 8 7 3.1755 -2.9487 -0.6975 9 6 3.4020 -3.5797 -2.0001 10 6 2.5968 -4.8780 -2.0847 11 6 3.0442 -5.8289 -0.9727 12 6 1.1079 -4.5664 -1.9208 13 6 2.8337 -5.5373 -3.4448 14 6 2.0412 -6.8164 -3.5280 15 1 1.4300 -7.1281 -2.6938 16 6 2.0964 -7.5887 -4.6688 17 7 2.8403 -7.2089 -5.6846 18 14 1.1146 -9.1746 -4.7715 19 1 -0.3307 -8.8732 -4.6119 20 1 1.3445 -9.8145 -6.0917 21 1 1.5500 -10.0971 -3.6922 22 6 4.5041 -0.0838 1.4280 23 6 4.3254 -1.4380 2.1190 24 1 -0.3634 0.4512 0.9233 25 1 -0.3633 0.5741 -0.8524 26 1 -0.3634 -1.0251 -0.0709 27 1 3.0828 1.3432 -0.0708 28 1 1.5898 1.9163 -0.8524 29 1 1.7045 1.8723 0.9233 30 1 1.4362 -1.6961 1.2391 31 1 1.8924 -0.1787 2.0499 32 1 2.5861 -3.3681 -0.0513 33 1 3.0828 -2.9024 -2.7923 34 1 4.4627 -3.8014 -2.1170 35 1 2.8758 -5.3594 -0.0035 36 1 2.4710 -6.7540 -1.0332 37 1 4.1050 -6.0509 -1.0895 38 1 0.7892 -3.8889 -2.7131 39 1 0.5344 -5.4914 -1.9806 40 1 0.9394 -4.0969 -0.9516 41 1 2.5153 -4.8600 -4.2373 42 1 3.8945 -5.7594 -3.5612 43 1 2.8795 -7.7525 -6.4871 44 1 5.4089 0.0652 0.8387 45 1 4.1297 0.7989 1.9463 46 1 3.8335 -1.4455 3.0916 47 1 5.1123 -2.1801 1.9843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602157578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:06 Heat of formation + Delta-G solvation = -24.504248 kcal Electronic energy + Delta-G solvation = -23403.493645 eV Core-core repulsion = 20200.596946 eV Total energy + Delta-G solvation = -3202.896699 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.13959 -37.97699 -36.89699 -35.67042 -33.45433 -31.99675 -28.29768 -27.71238 -27.08966 -26.45375 -26.28422 -23.62937 -22.63023 -22.43781 -21.78157 -19.40609 -18.01941 -16.88180 -16.28303 -15.76693 -15.60780 -15.24028 -14.97955 -14.53133 -14.46200 -14.35443 -13.70488 -13.26096 -13.09148 -12.72108 -12.67271 -12.45567 -12.15100 -12.08063 -12.00463 -11.95775 -11.83392 -11.65245 -11.09459 -10.96574 -10.84236 -10.59252 -10.56731 -10.36437 -10.26791 -10.18351 -9.81559 -9.59464 -9.09304 -8.88543 -8.54251 -8.50559 -8.32496 -5.96624 -3.97819 2.85380 3.33844 3.39219 3.39990 3.43625 3.60225 3.86681 4.47644 4.52307 4.60375 4.76856 4.97277 5.01963 5.12267 5.25191 5.29150 5.38774 5.40836 5.47365 5.50763 5.56211 5.69477 5.70710 5.74297 5.75740 5.82343 5.84579 5.97014 6.23959 6.30374 6.38575 6.47811 6.67040 6.68359 6.81940 6.85510 6.88911 7.11937 7.13036 7.19519 7.68300 7.81522 7.93564 8.02535 8.44326 8.63158 9.06847 9.64985 11.14822 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.003759 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.842792 B = 7447.626316 C = 7805.224155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.541 5.541 3 C 0.024 3.976 4 C 0.098 3.902 5 C -0.153 4.153 6 C 0.562 3.438 7 O -0.547 6.547 8 N -0.713 5.713 9 C 0.131 3.869 10 C -0.072 4.072 11 C -0.126 4.126 12 C -0.124 4.124 13 C 0.036 3.964 14 C -0.511 4.511 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.895 5.895 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.147 4.147 23 C -0.156 4.156 24 H 0.022 0.978 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.021 0.979 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.396 0.604 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.260 0.740 44 H 0.106 0.894 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 13.914 17.115 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.265 5.265 3 C -0.124 4.124 4 C -0.030 4.030 5 C -0.157 4.157 6 C 0.347 3.653 7 O -0.425 6.425 8 N -0.363 5.363 9 C 0.008 3.992 10 C -0.072 4.072 11 C -0.184 4.184 12 C -0.181 4.181 13 C -0.001 4.001 14 C -0.549 4.549 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.716 3.284 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.184 4.184 23 C -0.194 4.194 24 H 0.041 0.959 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.231 0.769 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.124 0.876 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.768 13.971 15.902 21.241 hybrid contribution -1.154 -0.707 0.799 1.571 sum -2.922 13.264 16.701 21.527 Atomic orbital electron populations 1.22389 0.86915 1.02609 1.00302 1.61799 1.07795 1.14216 1.42642 1.22455 1.01755 0.88270 0.99921 1.21555 0.91596 0.98385 0.91496 1.21494 0.93963 1.05444 0.94757 1.19062 0.80001 0.80364 0.85882 1.90664 1.34802 1.66176 1.50817 1.45986 1.48476 1.23050 1.18791 1.21574 1.00040 0.94295 0.83272 1.20884 0.94182 0.92412 0.99717 1.21758 1.01199 0.99879 0.95537 1.21727 0.96250 1.01442 0.98710 1.19079 0.97209 0.95007 0.88811 1.21152 1.27300 1.06138 1.00315 0.92353 1.25008 0.95632 0.97871 0.95943 1.69959 1.39695 1.38589 1.05173 0.86722 0.80592 0.83921 0.77122 1.20346 1.21415 1.20357 1.23015 1.00440 0.92894 1.02085 1.23066 1.01654 0.99645 0.95032 0.95916 0.91203 0.91066 0.90596 0.91520 0.96029 0.90080 0.93867 0.76948 0.91947 0.92092 0.95287 0.91535 0.93444 0.93373 0.91662 0.95305 0.96364 0.96416 0.93015 0.87563 0.88436 0.88028 0.88064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.54 60.07 0.57 0.81 16 2 N -0.54 -6.06 4.66 -251.27 -1.17 -7.23 16 3 C 0.02 0.24 9.28 60.06 0.56 0.80 16 4 C 0.10 0.97 4.86 -3.83 -0.02 0.95 16 5 C -0.15 -1.74 1.72 -155.66 -0.27 -2.01 16 6 C 0.56 8.84 6.84 -10.99 -0.08 8.77 16 7 O -0.55 -10.87 16.48 5.55 0.09 -10.77 16 8 N -0.71 -10.91 4.93 -60.30 -0.30 -11.21 16 9 C 0.13 2.42 4.57 -4.04 -0.02 2.40 16 10 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 11 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 12 C -0.12 -2.21 8.05 37.16 0.30 -1.91 16 13 C 0.04 0.91 4.04 -27.89 -0.11 0.79 16 14 C -0.51 -13.66 7.65 -34.44 -0.26 -13.92 16 15 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16 18 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.15 -1.47 8.23 -26.69 -0.22 -1.69 16 23 C -0.16 -1.42 9.96 -26.69 -0.27 -1.68 16 24 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 26 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.08 0.85 6.33 -51.92 -0.33 0.52 16 28 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.02 0.18 8.11 -51.93 -0.42 -0.24 16 30 H 0.08 0.75 7.96 -51.93 -0.41 0.33 16 31 H 0.04 0.36 7.98 -51.93 -0.41 -0.05 16 32 H 0.40 5.24 6.17 -40.82 -0.25 4.99 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 36 H 0.07 1.27 6.61 -51.93 -0.34 0.92 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.24 6.62 -51.93 -0.34 0.90 16 40 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.11 1.24 7.83 -51.93 -0.41 0.83 16 45 H 0.10 0.79 8.12 -51.93 -0.42 0.36 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -31.51 370.03 -8.34 -39.84 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.56 Total: 2.05 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 0.31 Total: -8.63 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.73 Total: -44.34 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.51 -8.34 -39.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602157578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.341 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds