Wall clock time and date at job start Tue Mar 31 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47284 * 2 1 4 4 C 1.53004 * 109.46984 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47083 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47030 * 305.00084 * 5 4 3 7 7 C 1.53001 * 109.46895 * 65.00062 * 5 4 3 8 8 C 1.50703 * 109.47174 * 184.99977 * 5 4 3 9 9 O 1.21283 * 119.99813 * 339.16084 * 8 5 4 10 10 N 1.34771 * 120.00009 * 159.15949 * 8 5 4 11 11 C 1.47076 * 120.88286 * 355.77196 * 10 8 5 12 12 C 1.53234 * 108.52572 * 231.16429 * 11 10 8 13 13 N 1.46899 * 109.33841 * 306.16796 * 12 11 10 14 14 C 1.46897 * 111.00003 * 187.24873 * 13 12 11 15 15 C 1.50705 * 109.47596 * 301.50136 * 14 13 12 16 16 H 1.07995 * 119.99736 * 2.43298 * 15 14 13 17 17 C 1.37875 * 120.00030 * 182.42422 * 15 14 13 18 18 N 1.31513 * 120.00130 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99618 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46758 * 90.00647 * 19 17 15 21 21 H 1.48507 * 109.46928 * 210.00221 * 19 17 15 22 22 H 1.48492 * 109.47124 * 330.00517 * 19 17 15 23 23 C 1.46906 * 111.26727 * 63.10488 * 13 12 11 24 24 C 1.47080 * 120.88236 * 175.75350 * 10 8 5 25 25 H 1.09004 * 109.46929 * 300.01008 * 1 2 3 26 26 H 1.09002 * 109.47140 * 59.99892 * 1 2 3 27 27 H 1.09001 * 109.47482 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47325 * 239.99063 * 2 1 3 29 29 H 1.09004 * 109.46702 * 119.99267 * 2 1 3 30 30 H 1.08994 * 109.47453 * 59.99740 * 3 2 1 31 31 H 1.09004 * 109.46652 * 299.99297 * 3 2 1 32 32 H 1.09000 * 109.46765 * 59.99585 * 4 3 2 33 33 H 1.08995 * 109.47203 * 299.99742 * 4 3 2 34 34 H 1.08995 * 109.47279 * 303.02594 * 7 5 4 35 35 H 1.08994 * 109.47093 * 63.02580 * 7 5 4 36 36 H 1.09000 * 109.46957 * 183.02758 * 7 5 4 37 37 H 1.09004 * 109.62916 * 350.87918 * 11 10 8 38 38 H 1.09005 * 109.63033 * 111.45127 * 11 10 8 39 39 H 1.09001 * 109.49359 * 66.12762 * 12 11 10 40 40 H 1.09000 * 109.49567 * 186.21330 * 12 11 10 41 41 H 1.09007 * 109.47253 * 61.50477 * 14 13 12 42 42 H 1.09000 * 109.47427 * 181.50156 * 14 13 12 43 43 H 0.97004 * 120.00011 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.49111 * 176.92974 * 23 13 12 45 45 H 1.08999 * 109.49206 * 56.85190 * 23 13 12 46 46 H 1.09005 * 109.62702 * 248.55030 * 24 10 8 47 47 H 1.08999 * 109.62500 * 9.12196 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6459 3.4234 -0.8423 7 6 3.6748 3.5696 1.3068 8 6 5.5821 2.8865 -0.1232 9 8 6.2158 1.8953 0.1716 10 7 6.2211 3.9894 -0.5609 11 6 5.4678 5.1698 -1.0109 12 6 5.9874 5.5813 -2.3925 13 7 7.4441 5.7606 -2.3308 14 6 7.9592 6.3204 -3.5874 15 6 7.6031 5.4035 -4.7292 16 1 7.0157 4.5160 -4.5460 17 6 8.0270 5.6979 -6.0078 18 7 8.7426 6.7785 -6.2308 19 14 7.5861 4.5609 -7.4229 20 1 6.2954 4.9902 -8.0189 21 1 8.6520 4.6194 -8.4553 22 1 7.4604 3.1697 -6.9193 23 6 8.1224 4.5006 -1.9986 24 6 7.6903 4.0448 -0.6009 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6768 1.9562 -0.8901 32 1 3.9337 0.9283 -0.8891 33 1 3.9330 0.9288 0.8908 34 1 2.5921 3.5209 1.4219 35 1 4.1525 3.0634 2.1456 36 1 3.9912 4.6125 1.2838 37 1 4.4077 4.9245 -1.0765 38 1 5.6141 5.9882 -0.3060 39 1 5.7469 4.8040 -3.1179 40 1 5.5181 6.5180 -2.6934 41 1 7.5154 7.3014 -3.7572 42 1 9.0430 6.4180 -3.5244 43 1 9.0405 6.9858 -7.1304 44 1 9.2015 4.6535 -2.0140 45 1 7.8523 3.7384 -2.7294 46 1 8.0503 4.7551 0.1435 47 1 8.0997 3.0558 -0.3954 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:28 Heat of formation + Delta-G solvation = -56.287494 kcal Electronic energy + Delta-G solvation = -23112.565383 eV Core-core repulsion = 19908.290459 eV Total energy + Delta-G solvation = -3204.274924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.15551 -37.73984 -36.36239 -34.46469 -33.50193 -32.29696 -30.69067 -28.89304 -28.02226 -25.70444 -25.02831 -23.36969 -22.75374 -21.82596 -21.01200 -19.88813 -18.41180 -17.13003 -16.33109 -15.83356 -15.76248 -15.13097 -14.82575 -14.42574 -14.19528 -14.05687 -13.86176 -13.72937 -13.34809 -13.22173 -12.88829 -12.57756 -12.25731 -12.17457 -11.91032 -11.78381 -11.48828 -11.20899 -11.16178 -11.10915 -11.04478 -10.94142 -10.74432 -10.69587 -10.58639 -10.57345 -10.25549 -9.93960 -9.69952 -9.38266 -8.49096 -8.38806 -7.28507 -6.08874 -4.18428 2.82564 3.20986 3.23393 3.30857 3.34256 4.35930 4.47144 4.57811 4.72676 4.83400 4.94649 4.97452 5.03424 5.19390 5.21543 5.30648 5.41678 5.46818 5.49266 5.54584 5.58233 5.61968 5.71898 5.74462 5.76954 5.80689 5.88160 5.91553 5.96238 6.03603 6.05491 6.11787 6.22514 6.28829 6.40260 6.58222 6.70485 6.78356 7.17837 7.44866 7.64236 7.83285 7.94365 8.15750 8.21711 8.38520 8.91368 9.49156 10.96293 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017169 B = 0.003960 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.466084 B = 7069.107736 C = 8012.822564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.100 4.100 5 C -0.112 4.112 6 H 0.093 0.907 7 C -0.141 4.141 8 C 0.517 3.483 9 O -0.552 6.552 10 N -0.605 5.605 11 C 0.108 3.892 12 C 0.048 3.952 13 N -0.540 5.540 14 C 0.188 3.812 15 C -0.552 4.552 16 H 0.056 0.944 17 C 0.066 3.934 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.050 3.950 24 C 0.114 3.886 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.031 0.969 42 H 0.034 0.966 43 H 0.263 0.737 44 H 0.077 0.923 45 H 0.041 0.959 46 H 0.067 0.933 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.182 -6.662 13.682 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.138 4.138 5 C -0.134 4.134 6 H 0.111 0.889 7 C -0.198 4.198 8 C 0.305 3.695 9 O -0.430 6.430 10 N -0.338 5.338 11 C -0.015 4.015 12 C -0.081 4.081 13 N -0.265 5.265 14 C 0.062 3.938 15 C -0.591 4.591 16 H 0.074 0.926 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.079 4.079 24 C -0.008 4.008 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.086 0.914 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.630 -6.732 14.068 20.068 hybrid contribution -0.304 -0.994 -1.788 2.068 sum -12.933 -7.726 12.280 19.436 Atomic orbital electron populations 1.21779 0.96028 1.01442 1.01729 1.21526 0.95620 0.97029 1.02145 1.21693 0.95183 0.96822 1.02139 1.21416 0.94708 0.94346 1.03366 1.21348 0.92375 0.99074 1.00554 0.88853 1.21767 1.01934 1.00419 0.95719 1.20617 0.90041 0.82281 0.76520 1.90649 1.68552 1.32948 1.50874 1.48200 1.07509 1.14782 1.63340 1.22054 0.95211 0.87193 0.97079 1.22248 0.90890 1.01145 0.93835 1.62492 1.02785 1.24554 1.36642 1.19764 0.96045 0.94854 0.83093 1.21737 1.34516 1.09435 0.93424 0.92604 1.24952 0.94742 0.95148 0.98831 1.69938 1.36149 1.25151 1.21579 0.86654 0.78219 0.81276 0.82260 1.20569 1.21039 1.19981 1.22237 0.99155 0.92483 0.94020 1.21817 0.78970 1.01830 0.98200 0.92851 0.92759 0.92943 0.92006 0.92045 0.91693 0.91941 0.91612 0.91048 0.91281 0.92165 0.92057 0.90129 0.91075 0.93843 0.90295 0.95062 0.94836 0.92733 0.90435 0.94032 0.91448 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -1.04 5.93 -26.73 -0.16 -1.20 16 3 C -0.12 -1.05 4.97 -26.73 -0.13 -1.18 16 4 C -0.10 -1.12 4.07 -26.73 -0.11 -1.23 16 5 C -0.11 -1.30 1.90 -91.77 -0.17 -1.47 16 6 H 0.09 0.99 6.28 -51.93 -0.33 0.67 16 7 C -0.14 -1.32 8.95 37.16 0.33 -0.98 16 8 C 0.52 8.06 6.85 -10.99 -0.08 7.99 16 9 O -0.55 -10.41 15.59 5.56 0.09 -10.32 16 10 N -0.61 -9.46 3.01 -172.47 -0.52 -9.98 16 11 C 0.11 1.50 5.97 -3.61 -0.02 1.48 16 12 C 0.05 0.87 5.14 -3.70 -0.02 0.85 16 13 N -0.54 -11.08 4.83 -235.76 -1.14 -12.22 16 14 C 0.19 4.68 5.12 -4.98 -0.03 4.65 16 15 C -0.55 -14.87 7.77 -34.44 -0.27 -15.14 16 16 H 0.06 1.51 5.87 -52.49 -0.31 1.21 16 17 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 18 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.05 0.97 5.26 -3.70 -0.02 0.95 16 24 C 0.11 1.89 6.61 -3.61 -0.02 1.87 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.50 6.50 -51.93 -0.34 0.17 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 34 H 0.07 0.52 6.43 -51.93 -0.33 0.18 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 37 H 0.08 0.91 5.51 -51.93 -0.29 0.63 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.88 6.61 -51.93 -0.34 0.54 16 40 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.90 8.05 -51.93 -0.42 0.48 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16 45 H 0.04 0.91 7.12 -51.93 -0.37 0.54 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.09 1.46 7.04 -51.93 -0.37 1.09 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -30.42 360.65 -9.37 -39.79 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.53 Total: -1.52 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.42 Total: -2.41 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.92 Total: -47.24 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.42 -9.37 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.499 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds