Wall clock time and date at job start Tue Mar 31 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47385 * 2 1 4 4 C 1.53004 * 109.47170 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47170 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47255 * 54.99070 * 5 4 3 7 7 C 1.52999 * 109.46739 * 294.99752 * 5 4 3 8 8 C 1.50692 * 109.47062 * 174.99865 * 5 4 3 9 9 O 1.21284 * 120.00433 * 94.08319 * 8 5 4 10 10 N 1.34780 * 120.00028 * 274.07934 * 8 5 4 11 11 C 1.47079 * 120.88117 * 5.12462 * 10 8 5 12 12 C 1.53693 * 108.27629 * 128.75543 * 11 10 8 13 13 N 1.46901 * 109.25823 * 54.08520 * 12 11 10 14 14 C 1.46895 * 110.99958 * 172.60685 * 13 12 11 15 15 C 1.50695 * 109.47275 * 294.30032 * 14 13 12 16 16 H 1.07999 * 120.00386 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00158 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99824 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00349 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47378 * 59.99372 * 19 17 15 21 21 H 1.48501 * 109.47486 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46784 * 300.00019 * 19 17 15 23 23 C 1.46896 * 111.26552 * 296.75821 * 13 12 11 24 24 C 1.47080 * 120.88318 * 185.40769 * 10 8 5 25 25 H 1.09001 * 109.47476 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47163 * 300.00338 * 1 2 3 27 27 H 1.08993 * 109.47016 * 60.00131 * 1 2 3 28 28 H 1.08999 * 109.47163 * 239.99662 * 2 1 3 29 29 H 1.09007 * 109.46929 * 119.99913 * 2 1 3 30 30 H 1.08999 * 109.47245 * 59.99713 * 3 2 1 31 31 H 1.09001 * 109.46630 * 300.00023 * 3 2 1 32 32 H 1.09007 * 109.46860 * 299.99740 * 4 3 2 33 33 H 1.08999 * 109.47447 * 59.99620 * 4 3 2 34 34 H 1.08998 * 109.47266 * 55.67068 * 7 5 4 35 35 H 1.09000 * 109.47131 * 175.67076 * 7 5 4 36 36 H 1.08998 * 109.47645 * 295.66917 * 7 5 4 37 37 H 1.09000 * 109.63261 * 248.52421 * 11 10 8 38 38 H 1.09007 * 109.62767 * 9.10370 * 11 10 8 39 39 H 1.09006 * 109.64927 * 294.08024 * 12 11 10 40 40 H 1.08998 * 109.42216 * 173.94839 * 12 11 10 41 41 H 1.09001 * 109.46968 * 54.30632 * 14 13 12 42 42 H 1.09004 * 109.46803 * 174.29877 * 14 13 12 43 43 H 0.97000 * 119.99822 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.49263 * 303.14012 * 23 13 12 45 45 H 1.09004 * 109.51517 * 183.07592 * 23 13 12 46 46 H 1.08997 * 109.62892 * 350.89593 * 24 10 8 47 47 H 1.08998 * 109.63302 * 111.47588 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 1 3.6458 3.4243 0.8405 7 6 3.6749 3.5685 -1.3087 8 6 5.5820 2.8866 0.1219 9 8 6.2722 2.9313 -0.8743 10 7 6.1584 2.8386 1.3393 11 6 5.3452 2.6715 2.5535 12 6 5.9331 1.5106 3.3713 13 7 7.3608 1.7604 3.6102 14 6 7.9218 0.7660 4.5345 15 6 7.2895 0.9296 5.8926 16 1 6.5450 1.6953 6.0530 17 6 7.6614 0.1016 6.9304 18 7 8.5676 -0.8313 6.7350 19 14 6.8771 0.3038 8.6137 20 1 5.4098 0.1039 8.5034 21 1 7.4443 -0.7014 9.5481 22 1 7.1534 1.6694 9.1276 23 6 8.1145 1.7918 2.3497 24 6 7.6166 2.9581 1.4895 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 0.8892 33 1 3.9331 0.9287 -0.8908 34 1 2.5945 3.4993 -1.4352 35 1 3.9706 4.6171 -1.2773 36 1 4.1708 3.0760 -2.1452 37 1 5.3728 3.5887 3.1418 38 1 4.3163 2.4418 2.2763 39 1 5.8143 0.5773 2.8207 40 1 5.4116 1.4391 4.3258 41 1 7.7183 -0.2361 4.1572 42 1 8.9990 0.9121 4.6152 43 1 8.8290 -1.4141 7.4651 44 1 7.9653 0.8547 1.8134 45 1 9.1752 1.9240 2.5629 46 1 8.0902 2.9180 0.5086 47 1 7.8583 3.9023 1.9775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602202480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:32 Heat of formation + Delta-G solvation = -55.947333 kcal Electronic energy + Delta-G solvation = -23172.884276 eV Core-core repulsion = 19968.624102 eV Total energy + Delta-G solvation = -3204.260173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22329 -37.69179 -36.49286 -34.38561 -33.47007 -32.39102 -30.73773 -28.79932 -28.25181 -25.97763 -24.93791 -23.32724 -22.69600 -21.67232 -21.00284 -20.18994 -18.31649 -17.25966 -16.39915 -15.87595 -15.64327 -15.20647 -14.80770 -14.44232 -14.39212 -14.11216 -13.69826 -13.61234 -13.49892 -13.39478 -12.72331 -12.67434 -12.40871 -12.17779 -11.90642 -11.75575 -11.44194 -11.30804 -11.25538 -11.09220 -11.04276 -10.98714 -10.78791 -10.75621 -10.60981 -10.59792 -10.54526 -9.90022 -9.45926 -9.30831 -8.51069 -8.41140 -7.34188 -6.07889 -4.10228 2.74011 3.16033 3.29376 3.34310 3.36414 4.36983 4.42097 4.60709 4.68895 4.78489 4.88627 4.93917 5.08099 5.20501 5.26841 5.27744 5.35294 5.41305 5.47719 5.50629 5.56880 5.63190 5.65029 5.71047 5.74125 5.78177 5.80647 5.88086 5.93187 6.02060 6.04212 6.06310 6.18945 6.21660 6.28417 6.44732 6.45644 6.71132 7.20450 7.26299 7.59136 7.72438 7.99878 8.10563 8.31875 8.45662 8.96641 9.54341 11.02889 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015107 B = 0.004236 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.955626 B = 6609.015684 C = 7957.916080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.112 4.112 5 C -0.110 4.110 6 H 0.091 0.909 7 C -0.135 4.135 8 C 0.517 3.483 9 O -0.552 6.552 10 N -0.608 5.608 11 C 0.107 3.893 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.511 4.511 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.041 3.959 24 C 0.117 3.883 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.097 0.903 41 H -0.009 1.009 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.018 5.640 -12.862 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.149 4.149 5 C -0.131 4.131 6 H 0.109 0.891 7 C -0.192 4.192 8 C 0.306 3.694 9 O -0.430 6.430 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.078 4.078 13 N -0.261 5.261 14 C 0.069 3.931 15 C -0.549 4.549 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.088 4.088 24 C -0.006 4.006 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.490 5.967 -13.064 19.033 hybrid contribution -0.311 -0.847 0.797 1.204 sum -12.801 5.120 -12.267 18.454 Atomic orbital electron populations 1.21768 0.95945 1.01545 1.01687 1.21542 0.95758 0.96874 1.02291 1.21666 0.94541 0.97014 1.02325 1.21587 0.95935 0.94230 1.03194 1.21336 0.92176 0.98748 1.00883 0.89051 1.21688 1.01022 1.00301 0.96222 1.20651 0.90509 0.75627 0.82645 1.90643 1.65075 1.50852 1.36454 1.48258 1.08075 1.71477 1.06283 1.22156 0.94101 1.00185 0.85175 1.22402 0.91322 0.94307 0.99768 1.62074 1.01142 1.52622 1.10229 1.19719 0.95628 0.87496 0.90242 1.21095 1.23148 1.16556 0.94137 0.91860 1.24993 0.95234 0.95163 0.99125 1.69950 1.31237 1.19838 1.32657 0.86555 0.79411 0.77884 0.83520 1.20260 1.21348 1.20121 1.22393 0.98929 0.96183 0.91288 1.21744 0.79451 0.99095 1.00284 0.92866 0.92703 0.92912 0.92083 0.91755 0.91721 0.91580 0.91168 0.91257 0.91809 0.92650 0.91483 0.90702 0.89958 0.95718 0.88516 0.99135 0.95040 0.92794 0.95592 0.90134 0.89498 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.12 -0.98 4.98 -26.73 -0.13 -1.11 16 4 C -0.11 -1.15 4.38 -26.73 -0.12 -1.27 16 5 C -0.11 -1.22 1.86 -91.78 -0.17 -1.39 16 6 H 0.09 0.89 6.77 -51.93 -0.35 0.53 16 7 C -0.13 -1.37 8.68 37.16 0.32 -1.05 16 8 C 0.52 7.76 6.80 -10.99 -0.07 7.69 16 9 O -0.55 -10.02 15.47 5.55 0.09 -9.93 16 10 N -0.61 -9.24 3.00 -172.19 -0.52 -9.76 16 11 C 0.11 1.51 6.16 -3.37 -0.02 1.49 16 12 C 0.05 0.92 5.47 -3.46 -0.02 0.90 16 13 N -0.54 -11.09 4.62 -235.47 -1.09 -12.18 16 14 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 15 C -0.51 -13.82 8.41 -34.44 -0.29 -14.11 16 16 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 19 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 C 0.04 0.75 5.62 -3.70 -0.02 0.73 16 24 C 0.12 1.86 6.61 -3.60 -0.02 1.84 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.50 6.47 -51.93 -0.34 0.17 16 32 H 0.07 0.79 7.22 -51.92 -0.37 0.42 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.51 6.37 -51.93 -0.33 0.18 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.78 7.71 -51.93 -0.40 0.38 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.94 4.95 -51.92 -0.26 0.68 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 1.84 6.67 -51.93 -0.35 1.50 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 46 H 0.09 1.39 7.04 -51.93 -0.37 1.02 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -30.65 362.64 -9.39 -40.04 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -8.60 Total: -2.26 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -0.46 Total: -1.90 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.87 Total: -47.42 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.65 -9.39 -40.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602202480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.908 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds