Wall clock time and date at job start Tue Mar 31 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47254 * 2 1 4 4 C 1.53001 * 109.47254 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46820 * 305.00693 * 4 3 2 6 6 C 1.53002 * 109.46992 * 65.00017 * 4 3 2 7 7 C 1.53002 * 109.47317 * 185.00288 * 4 3 2 8 8 C 1.50702 * 109.46868 * 175.00095 * 7 4 3 9 9 O 1.21278 * 120.00423 * 359.97438 * 8 7 4 10 10 N 1.34774 * 119.99692 * 180.02562 * 8 7 4 11 11 C 1.47081 * 120.88114 * 0.02562 * 10 8 7 12 12 C 1.53235 * 108.52054 * 231.16282 * 11 10 8 13 13 N 1.46906 * 109.34079 * 306.16959 * 12 11 10 14 14 C 1.46898 * 110.99801 * 187.25100 * 13 12 11 15 15 C 1.50700 * 109.46835 * 170.00134 * 14 13 12 16 16 H 1.08001 * 120.00412 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00313 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00149 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99689 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47324 * 89.99628 * 19 17 15 21 21 H 1.48497 * 109.47005 * 210.00209 * 19 17 15 22 22 H 1.48500 * 109.47246 * 329.99791 * 19 17 15 23 23 C 1.46896 * 111.26658 * 63.10656 * 13 12 11 24 24 C 1.47082 * 120.88386 * 179.97438 * 10 8 7 25 25 H 1.08998 * 109.47653 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47010 * 300.00155 * 1 2 3 27 27 H 1.09005 * 109.46895 * 59.99625 * 1 2 3 28 28 H 1.09004 * 109.46993 * 240.00364 * 2 1 3 29 29 H 1.08997 * 109.47112 * 120.00286 * 2 1 3 30 30 H 1.09004 * 109.46823 * 60.00260 * 3 2 1 31 31 H 1.08997 * 109.47295 * 300.00175 * 3 2 1 32 32 H 1.08995 * 109.46981 * 179.97438 * 6 4 3 33 33 H 1.08994 * 109.47177 * 300.00517 * 6 4 3 34 34 H 1.08996 * 109.46710 * 60.00433 * 6 4 3 35 35 H 1.09000 * 109.46797 * 55.00160 * 7 4 3 36 36 H 1.09000 * 109.46880 * 294.99953 * 7 4 3 37 37 H 1.09002 * 109.63012 * 111.45725 * 11 10 8 38 38 H 1.09000 * 109.63054 * 350.86988 * 11 10 8 39 39 H 1.08997 * 109.49554 * 186.21402 * 12 11 10 40 40 H 1.08997 * 109.49382 * 66.13002 * 12 11 10 41 41 H 1.08993 * 109.47768 * 290.00114 * 14 13 12 42 42 H 1.09004 * 109.47075 * 50.00431 * 14 13 12 43 43 H 0.97003 * 120.00014 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.49756 * 56.85119 * 23 13 12 45 45 H 1.08996 * 109.49111 * 176.93688 * 23 13 12 46 46 H 1.09001 * 109.62379 * 9.12792 * 24 10 8 47 47 H 1.08998 * 109.62760 * 248.54863 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0806 0.8326 -1.3064 7 6 4.0800 2.8794 0.1264 8 6 5.5819 2.8703 0.2506 9 8 6.1850 1.8182 0.2400 10 7 6.2548 4.0315 0.3744 11 6 5.5430 5.3185 0.3912 12 6 6.1943 6.2484 -0.6379 13 7 7.6368 6.3329 -0.3731 14 6 8.2704 7.3458 -1.2278 15 6 9.6854 7.5796 -0.7650 16 1 10.0749 7.0309 0.0798 17 6 10.4826 8.4946 -1.4194 18 7 11.7172 8.6990 -1.0152 19 14 9.8083 9.4452 -2.8793 20 1 9.1815 10.7044 -2.4033 21 1 10.9157 9.7663 -3.8151 22 1 8.7916 8.6204 -3.5802 23 6 8.2860 5.0254 -0.5366 24 6 7.7204 4.0453 0.4974 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 5.1705 0.8330 -1.3062 33 1 3.7172 -0.1911 -1.3960 34 1 3.7176 1.4220 -2.1484 35 1 3.6451 3.3431 1.0118 36 1 3.7921 3.4460 -0.7591 37 1 5.6144 5.7635 1.3837 38 1 4.4961 5.1613 0.1317 39 1 5.7518 7.2416 -0.5620 40 1 6.0311 5.8527 -1.6404 41 1 8.2789 6.9964 -2.2602 42 1 7.7087 8.2778 -1.1642 43 1 12.2779 9.3430 -1.4754 44 1 8.0937 4.6467 -1.5404 45 1 9.3604 5.1316 -0.3871 46 1 8.1131 3.0462 0.3082 47 1 8.0007 4.3681 1.5001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:08 Heat of formation + Delta-G solvation = -50.612131 kcal Electronic energy + Delta-G solvation = -22787.979770 eV Core-core repulsion = 19583.950949 eV Total energy + Delta-G solvation = -3204.028822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17788 -37.98002 -36.70506 -34.49663 -32.95812 -32.38689 -30.94193 -29.15405 -27.72094 -26.78683 -25.56413 -23.42788 -22.39365 -21.62310 -20.65198 -19.94401 -18.58030 -17.10667 -16.79051 -16.04311 -15.55417 -15.38497 -14.72759 -14.59876 -14.42706 -14.31852 -13.87481 -13.69056 -13.51638 -13.34089 -12.96693 -12.54205 -12.47116 -12.29130 -12.06876 -11.87310 -11.68253 -11.58622 -11.27245 -11.14359 -11.00261 -10.86748 -10.79246 -10.72977 -10.62664 -10.56415 -10.34487 -9.94454 -9.54042 -9.34182 -8.62251 -8.48312 -7.49198 -6.10263 -4.08378 2.73460 3.11300 3.24202 3.32231 3.33202 4.36962 4.40206 4.54567 4.59208 4.65244 4.87220 4.91130 5.02289 5.14229 5.19732 5.26108 5.29699 5.35000 5.41129 5.47083 5.48037 5.55562 5.60282 5.64772 5.70398 5.74201 5.78503 5.86150 5.94302 5.95517 5.96993 6.06321 6.07741 6.26148 6.32858 6.40435 6.46871 6.63613 6.80635 6.90834 7.50474 7.53947 7.79692 7.92753 8.29735 8.58242 8.97352 9.50857 11.02612 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036692 B = 0.003013 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.925757 B = 9290.301849 C = 9586.676130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.154 4.154 7 C -0.136 4.136 8 C 0.512 3.488 9 O -0.546 6.546 10 N -0.611 5.611 11 C 0.113 3.887 12 C 0.037 3.963 13 N -0.527 5.527 14 C 0.163 3.837 15 C -0.512 4.512 16 H 0.082 0.918 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.051 3.949 24 C 0.115 3.885 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.027 0.973 41 H -0.012 1.012 42 H 0.026 0.974 43 H 0.264 0.736 44 H 0.024 0.976 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.847 -12.564 1.572 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.095 0.905 6 C -0.211 4.211 7 C -0.176 4.176 8 C 0.301 3.699 9 O -0.424 6.424 10 N -0.344 5.344 11 C -0.011 4.011 12 C -0.093 4.093 13 N -0.251 5.251 14 C 0.037 3.963 15 C -0.550 4.550 16 H 0.100 0.900 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.703 3.297 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.194 1.194 23 C -0.078 4.078 24 C -0.007 4.007 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.045 0.955 41 H 0.006 0.994 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.043 0.957 45 H 0.120 0.880 46 H 0.107 0.893 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.289 -12.859 2.008 24.105 hybrid contribution -0.356 0.656 -1.674 1.833 sum -20.645 -12.203 0.334 23.984 Atomic orbital electron populations 1.21784 0.96095 1.01441 1.01689 1.21571 0.95501 0.97022 1.02273 1.21683 0.94770 0.96923 1.01918 1.20905 0.94313 0.94340 0.99847 0.90462 1.21989 1.03210 1.00030 0.95860 1.21783 0.92479 0.99482 1.03878 1.20657 0.90061 0.83229 0.75950 1.90635 1.70375 1.30526 1.50868 1.48292 1.08105 1.06058 1.71965 1.21886 0.95280 0.83196 1.00698 1.22449 0.91487 0.99234 0.96131 1.61904 1.00229 1.06642 1.56351 1.20172 0.95943 0.89958 0.90232 1.21008 0.94307 1.23414 1.16301 0.90049 1.24902 0.94756 0.96602 0.97042 1.69888 1.07292 1.35356 1.41147 0.86861 0.78908 0.80770 0.83191 1.20113 1.21167 1.19363 1.22386 1.01115 0.88468 0.95827 1.21841 0.78337 1.00382 1.00170 0.92938 0.92849 0.92845 0.91701 0.92055 0.92036 0.91971 0.90668 0.92854 0.93538 0.89105 0.89125 0.90494 0.90085 0.90032 0.95476 0.99384 0.95650 0.92591 0.95750 0.87968 0.89294 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.93 5.69 -26.73 -0.15 -1.08 16 3 C -0.12 -0.88 4.68 -26.73 -0.13 -1.01 16 4 C -0.08 -0.74 2.04 -90.62 -0.18 -0.92 16 5 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 6 C -0.15 -1.65 8.69 37.16 0.32 -1.32 16 7 C -0.14 -1.36 3.54 -27.88 -0.10 -1.46 16 8 C 0.51 7.19 7.42 -10.99 -0.08 7.11 16 9 O -0.55 -9.32 13.42 5.56 0.07 -9.24 16 10 N -0.61 -8.83 3.01 -172.43 -0.52 -9.35 16 11 C 0.11 1.40 6.50 -3.60 -0.02 1.38 16 12 C 0.04 0.57 5.62 -3.70 -0.02 0.54 16 13 N -0.53 -10.47 4.62 -235.74 -1.09 -11.56 16 14 C 0.16 3.82 3.79 -4.98 -0.02 3.80 16 15 C -0.51 -14.15 8.96 -34.44 -0.31 -14.46 16 16 H 0.08 2.44 7.37 -52.49 -0.39 2.06 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 19 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 C 0.05 0.96 5.46 -3.68 -0.02 0.94 16 24 C 0.11 1.87 6.60 -3.58 -0.02 1.85 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.02 5.95 -51.93 -0.31 0.71 16 33 H 0.05 0.51 6.56 -51.93 -0.34 0.17 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.74 8.00 -51.93 -0.42 0.33 16 36 H 0.09 0.81 7.66 -51.93 -0.40 0.41 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.74 6.02 -51.93 -0.31 0.43 16 39 H 0.08 1.17 7.99 -51.93 -0.41 0.75 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 41 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 42 H 0.03 0.59 7.40 -51.93 -0.38 0.21 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 2.14 6.67 -51.93 -0.35 1.80 16 46 H 0.09 1.46 7.06 -51.93 -0.37 1.10 16 47 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -31.16 357.86 -9.12 -40.28 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -8.62 Total: -2.27 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.46 Total: -3.37 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.83 Total: -47.21 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.24 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.16 -9.12 -40.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.330 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds