Wall clock time and date at job start Tue Mar 31 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52990 * 109.47632 * 2 1 4 4 C 1.52995 * 109.47632 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47368 * 54.99715 * 4 3 2 6 6 C 1.53003 * 109.47085 * 295.00138 * 4 3 2 7 7 C 1.53002 * 109.47586 * 175.00187 * 4 3 2 8 8 C 1.50695 * 109.47004 * 185.00059 * 7 4 3 9 9 O 1.21274 * 120.00413 * 0.27039 * 8 7 4 10 10 N 1.34784 * 119.99635 * 179.97438 * 8 7 4 11 11 C 1.47081 * 120.88154 * 359.72202 * 10 8 7 12 12 C 1.53694 * 108.27519 * 128.75458 * 11 10 8 13 13 N 1.46905 * 109.25711 * 54.08291 * 12 11 10 14 14 C 1.46895 * 110.99606 * 172.60539 * 13 12 11 15 15 C 1.50700 * 109.47403 * 294.29986 * 14 13 12 16 16 H 1.08000 * 119.99892 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00101 * 180.02562 * 15 14 13 18 18 N 1.31522 * 120.00123 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00101 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47360 * 59.99793 * 19 17 15 21 21 H 1.48498 * 109.46999 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46946 * 299.99888 * 19 17 15 23 23 C 1.46896 * 111.26527 * 296.75381 * 13 12 11 24 24 C 1.47082 * 120.87969 * 179.97438 * 10 8 7 25 25 H 1.08998 * 109.47907 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47440 * 300.00339 * 1 2 3 27 27 H 1.09003 * 109.47160 * 59.99728 * 1 2 3 28 28 H 1.09005 * 109.46871 * 240.00151 * 2 1 3 29 29 H 1.09006 * 109.46818 * 120.00660 * 2 1 3 30 30 H 1.09005 * 109.46870 * 60.00150 * 3 2 1 31 31 H 1.09003 * 109.47070 * 300.00327 * 3 2 1 32 32 H 1.09000 * 109.47371 * 299.99751 * 6 4 3 33 33 H 1.09008 * 109.47105 * 59.99700 * 6 4 3 34 34 H 1.09004 * 109.47431 * 179.97438 * 6 4 3 35 35 H 1.09005 * 109.47089 * 64.99807 * 7 4 3 36 36 H 1.09002 * 109.46787 * 305.00149 * 7 4 3 37 37 H 1.08996 * 109.62333 * 248.52362 * 11 10 8 38 38 H 1.08998 * 109.62400 * 9.10189 * 11 10 8 39 39 H 1.08997 * 109.64881 * 294.07662 * 12 11 10 40 40 H 1.09003 * 109.44160 * 173.96051 * 12 11 10 41 41 H 1.09000 * 109.47427 * 54.30199 * 14 13 12 42 42 H 1.09008 * 109.46955 * 174.30104 * 14 13 12 43 43 H 0.97002 * 119.99842 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.49593 * 303.14103 * 23 13 12 45 45 H 1.09002 * 109.48789 * 183.06398 * 23 13 12 46 46 H 1.08999 * 109.62696 * 350.89469 * 24 10 8 47 47 H 1.08994 * 109.62996 * 111.47795 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8528 -0.8409 6 6 4.0795 0.8329 1.3083 7 6 4.0802 2.8793 -0.1250 8 6 5.5821 2.8702 -0.2479 9 8 6.1847 1.8178 -0.2411 10 7 6.2552 4.0314 -0.3714 11 6 5.5429 5.3180 -0.3946 12 6 6.1940 6.2480 0.6414 13 7 7.6367 6.3325 0.3777 14 6 8.2697 7.3452 1.2331 15 6 7.7498 8.7107 0.8640 16 1 7.0216 8.8156 0.0734 17 6 8.2037 9.8259 1.5357 18 7 9.0902 9.6980 2.4988 19 14 7.5587 11.5184 1.0787 20 1 6.0871 11.5566 1.2736 21 1 8.1997 12.5422 1.9425 22 1 7.8771 11.8020 -0.3438 23 6 8.2857 5.0249 0.5413 24 6 7.7210 4.0451 -0.4921 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5140 0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.7158 1.4224 2.1499 33 1 3.7160 -0.1909 1.3979 34 1 5.1695 0.8324 1.3086 35 1 3.7914 3.4461 0.7602 36 1 3.6459 3.3428 -1.0109 37 1 5.6191 5.7607 -1.3877 38 1 4.4948 5.1609 -0.1401 39 1 6.0300 5.8521 1.6436 40 1 5.7517 7.2414 0.5659 41 1 8.0352 7.1371 2.2770 42 1 9.3501 7.3171 1.0907 43 1 9.4092 10.4826 2.9716 44 1 8.0926 4.6460 1.5449 45 1 9.3603 5.1311 0.3927 46 1 8.1134 3.0461 -0.3020 47 1 8.0028 4.3677 -1.4943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:11 Heat of formation + Delta-G solvation = -55.562876 kcal Electronic energy + Delta-G solvation = -22776.020500 eV Core-core repulsion = 19571.776997 eV Total energy + Delta-G solvation = -3204.243502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12544 -37.87647 -36.64884 -34.39132 -32.93868 -32.42085 -30.86491 -28.73191 -27.55576 -26.74830 -25.34351 -23.32617 -22.53921 -21.74869 -20.66512 -19.93260 -18.50311 -17.00600 -16.40957 -15.97976 -15.49513 -15.33805 -14.83301 -14.46991 -14.33267 -14.25721 -13.78470 -13.66676 -13.56066 -13.22985 -12.93340 -12.47518 -12.31370 -12.05573 -11.95895 -11.79200 -11.62710 -11.30347 -11.12086 -11.09255 -11.00479 -10.83547 -10.75115 -10.70465 -10.61952 -10.55021 -10.53226 -9.90090 -9.48581 -9.31259 -8.51303 -8.40907 -7.34848 -6.08273 -4.10652 2.77105 3.16028 3.29142 3.34064 3.36155 4.36634 4.45491 4.60263 4.69200 4.77810 4.92132 4.95484 5.07036 5.24914 5.27409 5.33314 5.38439 5.40471 5.51057 5.51654 5.55549 5.60944 5.64429 5.68886 5.74057 5.77422 5.82218 5.86140 5.97927 6.00112 6.04266 6.10483 6.27425 6.30601 6.42124 6.43915 6.45306 6.71262 7.19961 7.25690 7.59391 7.72041 7.99391 8.10053 8.32954 8.45151 8.96200 9.53910 11.02463 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026089 B = 0.003133 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.985721 B = 8935.850114 C = 9598.088568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.075 4.075 5 H 0.076 0.924 6 C -0.154 4.154 7 C -0.137 4.137 8 C 0.513 3.487 9 O -0.549 6.549 10 N -0.610 5.610 11 C 0.109 3.891 12 C 0.050 3.950 13 N -0.536 5.536 14 C 0.194 3.806 15 C -0.511 4.511 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.041 3.959 24 C 0.118 3.882 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.025 0.975 40 H 0.097 0.903 41 H -0.009 1.009 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.567 -15.245 -4.947 20.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.093 4.093 5 H 0.095 0.905 6 C -0.211 4.211 7 C -0.177 4.177 8 C 0.302 3.698 9 O -0.428 6.428 10 N -0.343 5.343 11 C -0.014 4.014 12 C -0.079 4.079 13 N -0.261 5.261 14 C 0.069 3.931 15 C -0.549 4.549 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.088 4.088 24 C -0.005 4.005 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.009 0.991 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.068 -15.535 -5.286 20.977 hybrid contribution -0.326 0.977 0.743 1.270 sum -13.394 -14.558 -4.543 20.297 Atomic orbital electron populations 1.21783 0.96100 1.01409 1.01725 1.21568 0.95500 0.97043 1.02220 1.21686 0.94773 0.96891 1.01994 1.20897 0.94325 0.94354 0.99774 0.90535 1.21990 1.03139 1.00004 0.95935 1.21785 0.92418 0.99441 1.04028 1.20662 0.90108 0.83180 0.75849 1.90620 1.70437 1.30575 1.51172 1.48289 1.07830 1.06361 1.71831 1.22107 0.95402 0.82917 1.01010 1.22412 0.90574 0.99852 0.95091 1.62077 1.01767 1.05056 1.57207 1.19722 0.94860 0.88979 0.89535 1.21094 1.24800 0.90603 1.18425 0.91858 1.25001 0.95163 0.99393 0.95026 1.69952 1.30600 1.30136 1.22992 0.86546 0.78957 0.83378 0.78435 1.20250 1.21357 1.20132 1.22394 0.99385 0.90609 0.96432 1.21719 0.78945 1.00039 0.99779 0.92967 0.92807 0.92854 0.92104 0.91714 0.91909 0.92015 0.93463 0.92901 0.90736 0.88989 0.89076 0.90616 0.90153 0.95715 0.88509 0.99136 0.95034 0.92790 0.95613 0.90130 0.89488 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.97 5.69 -26.74 -0.15 -1.12 16 3 C -0.12 -0.95 4.68 -26.74 -0.13 -1.07 16 4 C -0.07 -0.76 2.04 -90.62 -0.18 -0.95 16 5 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 6 C -0.15 -1.70 8.69 37.16 0.32 -1.38 16 7 C -0.14 -1.46 3.54 -27.88 -0.10 -1.56 16 8 C 0.51 7.41 7.42 -10.98 -0.08 7.32 16 9 O -0.55 -9.41 13.43 5.56 0.07 -9.34 16 10 N -0.61 -9.08 3.00 -172.21 -0.52 -9.60 16 11 C 0.11 1.51 6.53 -3.36 -0.02 1.49 16 12 C 0.05 0.89 5.47 -3.46 -0.02 0.88 16 13 N -0.54 -11.07 4.62 -235.50 -1.09 -12.16 16 14 C 0.19 4.91 4.72 -4.98 -0.02 4.89 16 15 C -0.51 -13.81 8.41 -34.44 -0.29 -14.10 16 16 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 19 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 C 0.04 0.74 5.62 -3.72 -0.02 0.72 16 24 C 0.12 1.85 6.59 -3.62 -0.02 1.82 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.52 6.56 -51.92 -0.34 0.18 16 34 H 0.07 1.03 5.96 -51.93 -0.31 0.72 16 35 H 0.09 0.91 7.67 -51.93 -0.40 0.51 16 36 H 0.09 0.82 7.99 -51.93 -0.41 0.40 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.87 6.02 -51.93 -0.31 0.56 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 1.83 6.67 -51.93 -0.35 1.49 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.03 0.86 7.97 -51.92 -0.41 0.44 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 46 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 361.50 15.07 5.45 5.45 Total: -1.00 -30.29 361.50 -9.47 -39.76 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -8.65 Total: -2.36 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.45 Total: -2.28 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.87 Total: -47.23 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.29 -9.47 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.808 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds