Wall clock time and date at job start Tue Mar 31 2020 05:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47910 * 110.99696 * 2 1 4 4 C 1.53989 * 107.05758 * 145.84431 * 3 2 1 5 5 C 1.54602 * 105.14047 * 358.78068 * 4 3 2 6 6 H 1.08998 * 110.72697 * 96.39662 * 5 4 3 7 7 C 1.50700 * 110.87459 * 219.61191 * 5 4 3 8 8 O 1.21288 * 119.99959 * 4.73324 * 7 5 4 9 9 N 1.34770 * 120.00115 * 184.73014 * 7 5 4 10 10 C 1.46501 * 120.00079 * 3.66558 * 9 7 5 11 11 C 1.50705 * 109.46584 * 95.81178 * 10 9 7 12 12 H 1.07996 * 120.00117 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99659 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99890 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00084 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46971 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46770 * 120.00053 * 15 13 11 18 18 H 1.48491 * 109.47339 * 240.00414 * 15 13 11 19 19 C 1.46504 * 120.00170 * 183.67202 * 9 7 5 20 20 C 1.52998 * 109.47504 * 88.23607 * 19 9 7 21 21 C 1.52999 * 109.47033 * 63.48258 * 20 19 9 22 22 C 1.53002 * 109.47177 * 183.48190 * 20 19 9 23 23 C 1.53002 * 109.47014 * 303.48276 * 20 19 9 24 24 C 1.48527 * 111.00544 * 117.39672 * 2 1 3 25 25 H 1.08997 * 109.47279 * 302.59884 * 1 2 3 26 26 H 1.08999 * 109.47260 * 62.60565 * 1 2 3 27 27 H 1.09000 * 109.46636 * 182.60304 * 1 2 3 28 28 H 1.09000 * 109.91484 * 26.49543 * 3 2 1 29 29 H 1.09001 * 110.07984 * 265.28883 * 3 2 1 30 30 H 1.08991 * 110.31312 * 239.86071 * 4 3 2 31 31 H 1.09005 * 110.30748 * 117.68799 * 4 3 2 32 32 H 1.08996 * 109.47356 * 215.81115 * 10 9 7 33 33 H 1.09001 * 109.46867 * 335.81827 * 10 9 7 34 34 H 0.97003 * 119.99906 * 179.97438 * 14 13 11 35 35 H 1.09004 * 109.46982 * 208.23669 * 19 9 7 36 36 H 1.09002 * 109.46950 * 328.23333 * 19 9 7 37 37 H 1.08995 * 109.47037 * 59.99812 * 21 20 19 38 38 H 1.08995 * 109.47321 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.46888 * 300.00176 * 21 20 19 40 40 H 1.09001 * 109.46827 * 60.00349 * 22 20 19 41 41 H 1.08993 * 109.47042 * 179.97438 * 22 20 19 42 42 H 1.08995 * 109.47039 * 300.00277 * 22 20 19 43 43 H 1.09003 * 109.47076 * 65.69924 * 23 20 19 44 44 H 1.08996 * 109.46967 * 185.69878 * 23 20 19 45 45 H 1.08998 * 109.47018 * 305.70403 * 23 20 19 46 46 H 1.09004 * 110.66791 * 81.84398 * 24 2 1 47 47 H 1.09004 * 110.66757 * 318.71788 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.2982 1.3661 0.8265 5 6 3.4492 -0.0929 1.3153 6 1 4.1116 -0.6539 0.6560 7 6 3.9529 -0.1341 2.7350 8 8 4.0978 0.8968 3.3573 9 7 4.2422 -1.3166 3.3133 10 6 4.1440 -2.5551 2.5370 11 6 5.5026 -2.9165 1.9941 12 1 6.3540 -2.2869 2.2064 13 6 5.6586 -4.0511 1.2262 14 7 4.6218 -4.8175 0.9673 15 14 7.3424 -4.4987 0.5526 16 1 8.3345 -3.4811 0.9834 17 1 7.7443 -5.8313 1.0702 18 1 7.2872 -4.5399 -0.9308 19 6 4.6546 -1.3635 4.7183 20 6 3.4165 -1.4772 5.6099 21 6 2.6992 -2.7973 5.3205 22 6 3.8409 -1.4388 7.0794 23 6 2.4712 -0.3093 5.3213 24 6 2.0014 -0.6380 1.2311 25 1 -0.3634 0.5536 0.8657 26 1 -0.3634 0.4728 -0.9124 27 1 -0.3632 -1.0266 0.0467 28 1 1.2757 2.0562 0.4572 29 1 2.2116 1.7001 -1.0203 30 1 3.2136 2.0430 1.6766 31 1 4.1469 1.6456 0.2023 32 1 3.7838 -3.3588 3.1791 33 1 3.4487 -2.4114 1.7100 34 1 4.7315 -5.6155 0.4268 35 1 5.2989 -2.2279 4.8791 36 1 5.1995 -0.4529 4.9676 37 1 3.3727 -3.6293 5.5261 38 1 1.8169 -2.8782 5.9554 39 1 2.3969 -2.8247 4.2737 40 1 4.3519 -0.4983 7.2855 41 1 2.9588 -1.5194 7.7145 42 1 4.5144 -2.2708 7.2849 43 1 2.0894 -0.3937 4.3039 44 1 1.6391 -0.3330 6.0248 45 1 3.0119 0.6310 5.4295 46 1 2.0042 -1.7235 1.1314 47 1 1.4238 -0.3323 2.1035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609257051.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:45 Heat of formation + Delta-G solvation = -44.041307 kcal Electronic energy + Delta-G solvation = -24534.824772 eV Core-core repulsion = 21331.080883 eV Total energy + Delta-G solvation = -3203.743889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.97223 -38.10462 -36.46265 -34.35666 -32.33721 -31.85489 -28.99230 -27.63199 -26.94708 -26.70472 -26.00613 -25.08852 -22.97979 -21.29962 -20.76329 -18.72399 -17.88882 -16.80033 -16.50420 -15.75652 -15.26055 -14.88978 -14.69173 -14.27244 -14.06666 -13.80000 -13.51220 -13.19682 -12.96743 -12.74139 -12.45962 -12.31975 -12.07567 -11.84824 -11.58972 -11.30723 -11.23976 -11.22742 -11.13854 -10.97883 -10.95382 -10.77958 -10.70371 -10.51634 -10.35423 -10.26341 -10.17106 -10.00343 -9.61493 -8.98993 -8.50878 -8.22853 -7.61875 -6.15553 -4.21969 3.23445 3.31966 3.34684 3.40873 3.88095 4.31679 4.39107 4.93185 5.00095 5.17595 5.20080 5.21192 5.27233 5.35334 5.47123 5.53552 5.56496 5.72339 5.86382 5.88116 5.88998 5.92064 5.94716 5.97780 6.12290 6.15676 6.20447 6.24098 6.28601 6.34002 6.38884 6.42150 6.50427 6.57665 6.61436 6.69500 6.81545 6.92761 7.04683 7.19789 7.26397 7.60244 7.79174 8.09649 8.40503 8.82223 9.05847 9.45600 10.90898 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010381 B = 0.008173 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.572769 B = 3425.280545 C = 5074.086676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.519 5.519 3 C 0.037 3.963 4 C -0.119 4.119 5 C -0.108 4.108 6 H 0.116 0.884 7 C 0.525 3.475 8 O -0.572 6.572 9 N -0.587 5.587 10 C 0.225 3.775 11 C -0.537 4.537 12 H 0.060 0.940 13 C 0.066 3.934 14 N -0.889 5.889 15 Si 0.894 3.106 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.130 3.870 20 C -0.084 4.084 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.130 4.130 24 C 0.050 3.950 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.039 0.961 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 6.906 3.693 10.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.243 5.243 3 C -0.091 4.091 4 C -0.157 4.157 5 C -0.130 4.130 6 H 0.134 0.866 7 C 0.313 3.687 8 O -0.453 6.453 9 N -0.316 5.316 10 C 0.106 3.894 11 C -0.576 4.576 12 H 0.078 0.922 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.208 1.208 19 C 0.006 3.994 20 C -0.085 4.085 21 C -0.198 4.198 22 C -0.193 4.193 23 C -0.187 4.187 24 C -0.077 4.077 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.118 0.882 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.322 6.950 3.442 10.005 hybrid contribution 0.636 -0.147 0.183 0.678 sum -5.686 6.802 3.625 9.578 Atomic orbital electron populations 1.22497 0.88222 1.02063 1.00375 1.64750 1.07728 1.14807 1.37009 1.22887 0.96030 0.89818 1.00369 1.22351 0.97071 0.96400 0.99905 1.22114 0.97843 0.97649 0.95374 0.86584 1.20148 0.77337 0.83318 0.87917 1.90553 1.55867 1.33532 1.65386 1.48109 1.64465 1.08235 1.10803 1.19744 0.97776 0.80481 0.91418 1.21537 0.94780 1.08904 1.32394 0.92209 1.24908 0.96922 0.95972 0.95888 1.69918 1.29476 1.14958 1.38411 0.86503 0.84177 0.78345 0.78833 1.19753 1.20940 1.20817 1.21340 0.94893 1.02283 0.80843 1.20953 0.96574 0.95999 0.94990 1.21953 0.99430 0.96215 1.02156 1.21781 1.00869 1.01508 0.95177 1.21837 0.98200 0.98167 1.00507 1.23282 0.93002 1.00926 0.90539 0.95715 0.91542 0.91199 0.94115 0.90551 0.89751 0.91029 0.94084 0.93488 0.92632 0.90457 0.91258 0.92630 0.93788 0.91617 0.92869 0.92997 0.92697 0.93267 0.94172 0.91889 0.88243 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.41 60.06 0.57 0.78 16 2 N -0.52 -8.08 5.55 -238.71 -1.33 -9.40 16 3 C 0.04 0.52 6.70 -2.75 -0.02 0.51 16 4 C -0.12 -1.91 6.37 -25.37 -0.16 -2.07 16 5 C -0.11 -2.00 2.43 -89.91 -0.22 -2.22 16 6 H 0.12 2.39 7.70 -51.93 -0.40 1.99 16 7 C 0.53 10.59 5.27 -10.99 -0.06 10.53 16 8 O -0.57 -12.24 13.10 5.55 0.07 -12.17 16 9 N -0.59 -11.92 2.00 -175.05 -0.35 -12.27 16 10 C 0.23 5.14 4.10 -5.19 -0.02 5.12 16 11 C -0.54 -13.83 9.38 -34.44 -0.32 -14.15 16 12 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -24.16 13.29 55.43 0.74 -23.42 16 15 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 16 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.13 2.40 4.61 -4.04 -0.02 2.38 16 20 C -0.08 -1.32 0.85 -154.51 -0.13 -1.45 16 21 C -0.14 -2.22 7.45 37.16 0.28 -1.95 16 22 C -0.14 -1.79 8.47 37.16 0.31 -1.47 16 23 C -0.13 -2.09 7.05 37.16 0.26 -1.83 16 24 C 0.05 0.86 5.46 -1.90 -0.01 0.85 16 25 H 0.02 0.30 7.99 -51.93 -0.42 -0.12 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.53 7.69 -51.93 -0.40 0.13 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.43 6.81 -51.93 -0.35 1.07 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.04 0.98 5.97 -51.93 -0.31 0.67 16 33 H 0.05 1.10 4.25 -51.93 -0.22 0.88 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 36 H 0.07 1.31 7.43 -51.93 -0.39 0.92 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.16 5.94 -51.93 -0.31 0.85 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.86 6.24 -51.93 -0.32 0.54 16 44 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.09 7.14 -51.93 -0.37 0.72 16 46 H 0.10 1.85 6.28 -51.93 -0.33 1.53 16 47 H 0.04 0.70 7.52 -51.93 -0.39 0.31 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -27.45 354.35 -8.58 -36.04 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.40 Total: 3.64 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 0.36 Total: -3.34 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.94 Total: -45.10 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.07 Total: -12.17 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.45 -8.58 -36.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609257051.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.006 kcal (2) G-P(sol) polarization free energy of solvation -27.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds