Wall clock time and date at job start Tue Mar 31 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47846 * 111.00271 * 2 1 4 4 C 1.55113 * 104.90291 * 146.24229 * 3 2 1 5 5 C 1.55132 * 101.56359 * 323.16258 * 4 3 2 6 6 H 1.09001 * 110.70921 * 276.96649 * 5 4 3 7 7 C 1.50697 * 110.71157 * 153.90471 * 5 4 3 8 8 O 1.21286 * 119.99432 * 351.31436 * 7 5 4 9 9 N 1.34773 * 120.00352 * 171.31066 * 7 5 4 10 10 C 1.46508 * 119.99930 * 184.11635 * 9 7 5 11 11 C 1.50698 * 109.47399 * 274.89919 * 10 9 7 12 12 H 1.07998 * 119.99894 * 4.83840 * 11 10 9 13 13 C 1.37870 * 120.00019 * 184.84337 * 11 10 9 14 14 N 1.31518 * 120.00267 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00023 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47198 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47218 * 119.99936 * 15 13 11 18 18 H 1.48508 * 109.47072 * 239.99688 * 15 13 11 19 19 C 1.46495 * 120.00266 * 4.12114 * 9 7 5 20 20 C 1.53000 * 109.47088 * 262.77099 * 19 9 7 21 21 C 1.52990 * 109.47452 * 61.14720 * 20 19 9 22 22 C 1.53004 * 109.46557 * 301.14648 * 20 19 9 23 23 C 1.52998 * 109.47348 * 181.15435 * 20 19 9 24 24 C 1.47441 * 111.00512 * 120.84869 * 2 1 3 25 25 H 1.09007 * 109.46232 * 299.15313 * 1 2 3 26 26 H 1.08992 * 109.47346 * 59.14982 * 1 2 3 27 27 H 1.08996 * 109.46893 * 179.15520 * 1 2 3 28 28 H 1.09000 * 110.37612 * 265.20065 * 3 2 1 29 29 H 1.08996 * 110.36842 * 27.43211 * 3 2 1 30 30 H 1.09002 * 111.14761 * 205.04940 * 4 3 2 31 31 H 1.09010 * 110.92057 * 81.17559 * 4 3 2 32 32 H 1.09003 * 109.46788 * 34.90117 * 10 9 7 33 33 H 1.08994 * 109.46917 * 154.89079 * 10 9 7 34 34 H 0.96997 * 120.00302 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.47377 * 142.76459 * 19 9 7 36 36 H 1.09001 * 109.46959 * 22.76336 * 19 9 7 37 37 H 1.08999 * 109.47440 * 68.95179 * 21 20 19 38 38 H 1.09009 * 109.47377 * 308.95377 * 21 20 19 39 39 H 1.09003 * 109.47580 * 188.95252 * 21 20 19 40 40 H 1.09005 * 109.47290 * 187.13995 * 22 20 19 41 41 H 1.08998 * 109.47758 * 307.14333 * 22 20 19 42 42 H 1.09007 * 109.47319 * 67.14479 * 22 20 19 43 43 H 1.09007 * 109.46510 * 299.99678 * 23 20 19 44 44 H 1.08999 * 109.47563 * 59.99210 * 23 20 19 45 45 H 1.08993 * 109.47531 * 180.02562 * 23 20 19 46 46 H 1.09005 * 109.89133 * 117.32907 * 24 2 1 47 47 H 1.09004 * 110.01894 * 356.22185 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3053 1.3060 0.8329 5 6 2.9160 0.2820 1.9313 6 1 2.3755 0.7721 2.7411 7 6 4.1384 -0.4234 2.4597 8 8 5.2104 -0.2705 1.9132 9 7 4.0406 -1.2239 3.5395 10 6 5.2434 -1.8380 4.1075 11 6 5.5512 -3.1158 3.3704 12 1 4.9618 -3.3986 2.5106 13 6 6.5850 -3.9239 3.7935 14 7 7.3029 -3.5794 4.8402 15 14 6.9660 -5.5082 2.8802 16 1 6.0192 -5.6664 1.7471 17 1 8.3563 -5.4581 2.3608 18 1 6.8250 -6.6600 3.8069 19 6 2.7315 -1.4803 4.1451 20 6 2.5284 -0.5423 5.3367 21 6 2.5655 0.9094 4.8552 22 6 3.6432 -0.7690 6.3598 23 6 1.1736 -0.8296 5.9868 24 6 1.9975 -0.7058 1.1817 25 1 -0.3632 0.5007 0.8976 26 1 -0.3633 0.5269 -0.8822 27 1 -0.3633 -1.0275 -0.0152 28 1 2.2148 1.7039 -1.0182 29 1 1.2882 2.0595 0.4707 30 1 3.5484 2.2744 1.2704 31 1 4.1322 0.9341 0.2278 32 1 6.0834 -1.1503 4.0091 33 1 5.0757 -2.0580 5.1618 34 1 8.0300 -4.1481 5.1381 35 1 2.6847 -2.5149 4.4849 36 1 1.9490 -1.3045 3.4069 37 1 1.6814 1.1147 4.2516 38 1 3.4608 1.0703 4.2545 39 1 2.5807 1.5776 5.7162 40 1 3.4306 -0.1953 7.2620 41 1 3.6988 -1.8289 6.6080 42 1 4.5947 -0.4441 5.9385 43 1 0.3793 -0.6683 5.2578 44 1 1.1471 -1.8639 6.3298 45 1 1.0286 -0.1612 6.8354 46 1 2.5698 -1.5786 0.8672 47 1 1.1772 -1.0143 1.8299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609257052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:49 Heat of formation + Delta-G solvation = -33.255174 kcal Electronic energy + Delta-G solvation = -24484.617462 eV Core-core repulsion = 21281.341294 eV Total energy + Delta-G solvation = -3203.276168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.17179 -38.11021 -36.89677 -33.85371 -32.45485 -31.94515 -29.44382 -27.60030 -27.31231 -26.82992 -25.84305 -25.31298 -23.11887 -21.10102 -20.98681 -19.22971 -17.93976 -16.82938 -16.50864 -15.81808 -15.40858 -14.93027 -14.80919 -14.31830 -14.00850 -13.84607 -13.59412 -13.44930 -13.20679 -12.81651 -12.55631 -12.23746 -12.15025 -11.98753 -11.71281 -11.61521 -11.39381 -11.31785 -11.25654 -11.10809 -11.03239 -10.88019 -10.80137 -10.59512 -10.54454 -10.31131 -10.11264 -10.07712 -9.49054 -8.81174 -8.38092 -8.32711 -7.57245 -6.00419 -4.03363 3.32364 3.39322 3.41500 3.46896 3.89968 4.04954 4.48740 4.68893 4.76072 4.97316 5.00215 5.05364 5.17747 5.27730 5.32378 5.33550 5.36755 5.44127 5.51886 5.58277 5.67759 5.69769 5.74092 5.75600 5.87987 5.91191 5.97017 6.04066 6.10518 6.18940 6.19252 6.21100 6.29068 6.40565 6.46260 6.57093 6.75912 6.90842 7.02980 7.15001 7.46470 7.61109 7.97147 8.29454 8.48822 8.95984 9.16120 9.61260 11.07484 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.006379 C = 0.005137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.305017 B = 4388.594466 C = 5449.541791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.533 5.533 3 C 0.042 3.958 4 C -0.111 4.111 5 C -0.150 4.150 6 H 0.106 0.894 7 C 0.516 3.484 8 O -0.536 6.536 9 N -0.591 5.591 10 C 0.240 3.760 11 C -0.519 4.519 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.897 5.897 15 Si 0.895 3.105 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.285 1.285 19 C 0.116 3.884 20 C -0.087 4.087 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.137 4.137 24 C 0.056 3.944 25 H 0.025 0.975 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.049 0.951 34 H 0.261 0.739 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.731 9.102 -1.149 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.257 5.257 3 C -0.086 4.086 4 C -0.149 4.149 5 C -0.172 4.172 6 H 0.124 0.876 7 C 0.302 3.698 8 O -0.413 6.413 9 N -0.322 5.322 10 C 0.122 3.878 11 C -0.558 4.558 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.537 5.537 15 Si 0.723 3.277 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.211 1.211 19 C -0.008 4.008 20 C -0.089 4.089 21 C -0.202 4.202 22 C -0.198 4.198 23 C -0.195 4.195 24 C -0.072 4.072 25 H 0.044 0.956 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.836 8.836 -1.777 17.359 hybrid contribution -0.094 -0.584 0.390 0.708 sum -14.930 8.252 -1.387 17.115 Atomic orbital electron populations 1.22542 0.87909 1.02025 1.00359 1.63573 1.07610 1.14534 1.40004 1.23116 0.95708 0.89124 1.00622 1.22639 0.97897 0.98309 0.96092 1.23020 0.96871 0.97720 0.99590 0.87606 1.19973 0.89389 0.79773 0.80662 1.90666 1.29661 1.63639 1.57308 1.48152 1.08816 1.46513 1.28692 1.19475 0.81185 0.92690 0.94494 1.21496 1.15483 1.05362 1.13412 0.92538 1.24907 0.95889 0.98220 0.95137 1.69933 1.20583 1.38225 1.24962 0.86486 0.78356 0.83092 0.79768 1.19807 1.20950 1.21081 1.21642 0.85718 0.99326 0.94142 1.20998 0.95804 0.95618 0.96452 1.22079 1.01304 0.95862 1.00909 1.22013 0.98695 1.01894 0.97195 1.21808 0.95777 1.01743 1.00137 1.22825 0.97139 0.97349 0.89869 0.95610 0.91511 0.91378 0.90137 0.93785 0.90795 0.88949 0.94934 0.93279 0.92905 0.90259 0.91364 0.93034 0.92013 0.92829 0.93725 0.92066 0.91319 0.93070 0.92387 0.92749 0.89783 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.12 60.07 0.55 0.75 16 2 N -0.53 -7.02 5.44 -239.38 -1.30 -8.32 16 3 C 0.04 0.50 6.73 -2.19 -0.01 0.49 16 4 C -0.11 -1.60 6.27 -24.49 -0.15 -1.75 16 5 C -0.15 -2.30 2.01 -89.95 -0.18 -2.48 16 6 H 0.11 1.42 3.87 -51.93 -0.20 1.22 16 7 C 0.52 10.65 5.54 -10.99 -0.06 10.59 16 8 O -0.54 -13.59 15.37 5.55 0.09 -13.50 16 9 N -0.59 -12.14 2.01 -175.06 -0.35 -12.49 16 10 C 0.24 6.13 3.86 -5.19 -0.02 6.11 16 11 C -0.52 -14.74 9.35 -34.44 -0.32 -15.06 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 15 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C 0.12 1.86 4.50 -4.04 -0.02 1.84 16 20 C -0.09 -1.19 0.84 -154.51 -0.13 -1.32 16 21 C -0.14 -1.84 6.88 37.15 0.26 -1.58 16 22 C -0.14 -2.19 6.90 37.16 0.26 -1.93 16 23 C -0.14 -1.49 8.46 37.16 0.31 -1.17 16 24 C 0.06 0.81 5.58 -2.84 -0.02 0.79 16 25 H 0.03 0.24 8.10 -51.93 -0.42 -0.18 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.45 7.78 -51.93 -0.40 0.05 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.58 7.29 -51.92 -0.38 1.20 16 32 H 0.03 0.95 7.64 -51.93 -0.40 0.55 16 33 H 0.05 1.24 5.28 -51.93 -0.27 0.97 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 36 H 0.07 0.95 4.43 -51.93 -0.23 0.72 16 37 H 0.05 0.56 6.77 -51.93 -0.35 0.21 16 38 H 0.06 0.93 5.59 -51.92 -0.29 0.64 16 39 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 1.01 7.60 -51.93 -0.39 0.62 16 42 H 0.07 1.26 6.22 -51.93 -0.32 0.93 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 1.45 7.81 -51.93 -0.41 1.05 16 47 H 0.06 0.75 6.15 -51.93 -0.32 0.43 16 LS Contribution 350.53 15.07 5.28 5.28 Total: -1.00 -32.13 350.53 -8.37 -40.50 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -8.16 Total: 0.27 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 0.36 Total: -3.11 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.92 Total: -46.61 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.13 -8.37 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609257052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.249 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds