Wall clock time and date at job start Tue Mar 31 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47072 * 2 1 4 4 C 1.53002 * 109.47072 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46820 * 304.99604 * 4 3 2 6 6 C 1.52995 * 109.47141 * 64.99957 * 4 3 2 7 7 C 1.53001 * 109.46963 * 184.99919 * 4 3 2 8 8 C 1.50706 * 109.47079 * 174.99847 * 7 4 3 9 9 O 1.21284 * 119.99687 * 0.02562 * 8 7 4 10 10 N 1.34771 * 120.00221 * 179.97438 * 8 7 4 11 11 C 1.46498 * 120.00175 * 179.97438 * 10 8 7 12 12 C 1.53042 * 109.46279 * 275.03077 * 11 10 8 13 13 C 1.53194 * 109.31097 * 178.59640 * 12 11 10 14 14 N 1.46926 * 108.76489 * 54.66207 * 13 12 11 15 15 C 1.36941 * 120.63186 * 126.35566 * 14 13 12 16 16 H 1.07995 * 119.99902 * 331.86454 * 15 14 13 17 17 C 1.38809 * 119.99420 * 151.85857 * 15 14 13 18 18 N 1.31620 * 120.00779 * 343.06867 * 17 15 14 19 19 Si 1.86807 * 119.99668 * 163.06714 * 17 15 14 20 20 H 1.48497 * 109.46780 * 89.99937 * 19 17 15 21 21 H 1.48496 * 109.47077 * 210.00015 * 19 17 15 22 22 H 1.48496 * 109.47166 * 330.00369 * 19 17 15 23 23 C 1.46930 * 118.73393 * 306.37854 * 14 13 12 24 24 C 1.53039 * 109.46240 * 154.97804 * 11 10 8 25 25 H 1.09002 * 109.47229 * 300.00288 * 1 2 3 26 26 H 1.09002 * 109.47345 * 59.99996 * 1 2 3 27 27 H 1.08998 * 109.46982 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46999 * 239.99871 * 2 1 3 29 29 H 1.09000 * 109.46986 * 119.99607 * 2 1 3 30 30 H 1.09004 * 109.47822 * 59.99943 * 3 2 1 31 31 H 1.09002 * 109.47391 * 299.99497 * 3 2 1 32 32 H 1.08996 * 109.47551 * 60.00095 * 6 4 3 33 33 H 1.09007 * 109.47153 * 180.02562 * 6 4 3 34 34 H 1.09003 * 109.47048 * 299.99637 * 6 4 3 35 35 H 1.09004 * 109.47273 * 294.99210 * 7 4 3 36 36 H 1.08994 * 109.47642 * 54.99908 * 7 4 3 37 37 H 0.96997 * 120.00099 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.45846 * 35.00448 * 11 10 8 39 39 H 1.08992 * 109.49885 * 298.56450 * 12 11 10 40 40 H 1.09006 * 109.49294 * 58.66060 * 12 11 10 41 41 H 1.08999 * 109.60295 * 294.86630 * 13 12 11 42 42 H 1.09005 * 109.69777 * 174.50390 * 13 12 11 43 43 H 0.96998 * 120.00378 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.58349 * 293.82199 * 23 14 13 45 45 H 1.09006 * 109.69758 * 173.46532 * 23 14 13 46 46 H 1.09002 * 109.49278 * 301.33846 * 24 11 10 47 47 H 1.08996 * 109.49854 * 61.43471 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9329 0.8532 0.8427 6 6 4.0805 0.8327 -1.3063 7 6 4.0799 2.8795 0.1263 8 6 5.5818 2.8706 0.2505 9 8 6.1849 1.8184 0.2391 10 7 6.2548 4.0318 0.3733 11 6 7.7147 4.0230 0.4946 12 6 8.1034 3.8116 1.9596 13 6 9.6302 3.7680 2.0775 14 7 10.1857 4.9881 1.4761 15 6 11.0427 5.7874 2.1846 16 1 10.9812 5.8232 3.2622 17 6 11.9904 6.5513 1.5176 18 7 12.2984 6.2746 0.2683 19 14 12.8290 7.9725 2.3933 20 1 14.0592 7.4830 3.0657 21 1 13.1888 9.0202 1.4043 22 1 11.9055 8.5441 3.4060 23 6 9.8038 5.3345 0.1002 24 6 8.2751 5.3601 0.0045 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7176 1.4219 -2.1484 33 1 5.1706 0.8322 -1.3057 34 1 3.7173 -0.1912 -1.3959 35 1 3.7920 3.4460 -0.7593 36 1 3.6450 3.3433 1.0116 37 1 5.7725 4.8733 0.3820 38 1 8.1245 3.2140 -0.1102 39 1 7.7152 4.6334 2.5612 40 1 7.6842 2.8703 2.3150 41 1 10.0128 2.8940 1.5505 42 1 9.9163 3.7156 3.1280 43 1 12.9604 6.8087 -0.1979 44 1 10.2006 4.5881 -0.5879 45 1 10.2025 6.3162 -0.1556 46 1 7.9782 5.5211 -1.0318 47 1 7.8853 6.1672 0.6247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609328237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:44 Heat of formation + Delta-G solvation = -52.518580 kcal Electronic energy + Delta-G solvation = -22657.750626 eV Core-core repulsion = 19453.639135 eV Total energy + Delta-G solvation = -3204.111492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88139 -37.69056 -36.61619 -34.37280 -32.87706 -32.10122 -30.19800 -29.55279 -27.79861 -26.76091 -24.90251 -22.65288 -22.20858 -21.62487 -20.34003 -19.88796 -19.16530 -17.12267 -16.50121 -15.87305 -15.62662 -15.22381 -14.79684 -14.36453 -14.00347 -13.75310 -13.69992 -13.52473 -13.36704 -12.99448 -12.66547 -12.46498 -12.35849 -12.07627 -11.83605 -11.67333 -11.45325 -11.15168 -11.10709 -10.91841 -10.78039 -10.73548 -10.70495 -10.60950 -10.45888 -10.27039 -10.02704 -9.83101 -9.63468 -9.34112 -8.65564 -8.44891 -6.67926 -5.79586 -3.21701 2.85765 3.36553 3.43285 3.44282 3.46406 4.49431 4.53525 4.64771 4.69015 4.93919 4.98375 5.10840 5.30313 5.33793 5.37002 5.45721 5.49551 5.50103 5.52676 5.59720 5.60970 5.67603 5.73701 5.80348 5.89781 5.96279 5.98163 6.07941 6.10172 6.27938 6.30081 6.34813 6.45817 6.54324 6.57641 6.62199 6.80760 6.96202 7.00345 7.32031 7.60397 7.77148 7.81426 8.44566 8.48574 9.20778 9.84112 10.41325 11.29371 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052938 B = 0.002737 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.790069 B =10228.959035 C =10274.064465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.075 4.075 5 H 0.077 0.923 6 C -0.154 4.154 7 C -0.139 4.139 8 C 0.508 3.492 9 O -0.540 6.540 10 N -0.727 5.727 11 C 0.150 3.850 12 C -0.138 4.138 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.174 3.826 24 C -0.146 4.146 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.395 0.605 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.254 0.746 44 H 0.020 0.980 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.300 -6.636 -2.069 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.094 4.094 5 H 0.096 0.904 6 C -0.211 4.211 7 C -0.179 4.179 8 C 0.294 3.706 9 O -0.418 6.418 10 N -0.377 5.377 11 C 0.047 3.953 12 C -0.178 4.178 13 C 0.020 3.980 14 N -0.316 5.316 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.228 0.772 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.714 -7.308 -2.181 22.073 hybrid contribution 0.196 1.255 0.395 1.330 sum -20.518 -6.053 -1.786 21.467 Atomic orbital electron populations 1.21783 0.96129 1.01435 1.01643 1.21575 0.95465 0.97052 1.02319 1.21685 0.94870 0.96892 1.01831 1.20888 0.94213 0.94405 0.99909 0.90428 1.21993 1.03324 0.99995 0.95784 1.21780 0.92717 0.99530 1.03838 1.20653 0.89874 0.83998 0.76032 1.90661 1.70374 1.30833 1.49882 1.46398 1.08757 1.08380 1.74149 1.21014 0.77678 0.99376 0.97233 1.22360 0.99438 1.00439 0.95590 1.20875 0.89986 0.89708 0.97395 1.44092 1.52048 1.22757 1.12677 1.19175 1.09193 1.18864 0.90880 0.91692 1.25058 0.96835 1.01099 0.96741 1.70025 1.33900 1.39692 1.11171 0.86303 0.79444 0.82359 0.78707 1.21381 1.21567 1.20518 1.20735 0.87003 1.01740 0.85751 1.22526 1.01570 0.95191 0.99332 0.92879 0.92871 0.92937 0.91678 0.92028 0.92098 0.92029 0.93573 0.90546 0.92902 0.89255 0.89265 0.77221 0.90150 0.92436 0.92810 0.96225 0.92607 0.93606 0.96156 0.89068 0.92826 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.96 5.69 -26.73 -0.15 -1.11 16 3 C -0.12 -0.90 4.68 -26.73 -0.13 -1.02 16 4 C -0.08 -0.75 2.04 -90.62 -0.18 -0.93 16 5 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 6 C -0.15 -1.66 8.69 37.15 0.32 -1.34 16 7 C -0.14 -1.35 5.17 -27.88 -0.14 -1.49 16 8 C 0.51 7.10 7.51 -10.99 -0.08 7.02 16 9 O -0.54 -9.60 13.63 5.55 0.08 -9.53 16 10 N -0.73 -10.04 5.08 -53.77 -0.27 -10.32 16 11 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 12 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 13 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 14 N -0.59 -14.93 2.99 -172.32 -0.52 -15.45 16 15 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 16 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 17 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 18 N -0.90 -26.16 11.19 55.49 0.62 -25.53 16 19 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 24 C -0.15 -2.69 5.55 -26.61 -0.15 -2.83 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 1.05 5.95 -51.92 -0.31 0.74 16 34 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.39 4.35 8.60 -40.82 -0.35 4.00 16 38 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -30.67 362.96 -9.15 -39.82 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.77 Total: 1.39 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -0.73 Total: -2.39 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.17 Total: -51.30 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.67 -9.15 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.700 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds